mRNA_S-latissima_F_contig1057.488.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1057.488.1
Unique NamemRNA_S-latissima_F_contig1057.488.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1057.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1057contigS-latissima_F_contig1057:48890..49234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.8023593-CDS-S-latissima_F_contig1057:48889..492341622815431.8023593-CDS-S-latissima_F_contig1057:48889..49234Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1057 48890..49234 +
1693924880.4168942-CDS-S-latissima_F_contig1057:48889..492341693924880.4168942-CDS-S-latissima_F_contig1057:48889..49234Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1057 48890..49234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1057.488.1prot_S-latissima_F_contig1057.488.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1057 48890..49234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1057.488.1

>prot_S-latissima_F_contig1057.488.1 ID=prot_S-latissima_F_contig1057.488.1|Name=mRNA_S-latissima_F_contig1057.488.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=115bp
DTFLFTGEYRHYYSSSNVLLSIYHSVPKHKQYIQHSIETGLIFRDRVVSR
KLIILTIWMCVIEEVIRDTMIRVTANELGVRYVQIAPELFFVQAVCGQFH
PCPSTQTKPPQTHP*
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mRNA from alignment at S-latissima_F_contig1057:48890..49234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1057.488.1 ID=mRNA_S-latissima_F_contig1057.488.1|Name=mRNA_S-latissima_F_contig1057.488.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=345bp|location=Sequence derived from alignment at S-latissima_F_contig1057:48890..49234+ (Saccharina latissima SLPER63f female)
GATACTTTTCTATTTACAGGCGAGTACAGGCACTACTACAGCAGTAGTAA
CGTTCTTCTTAGTATCTACCACTCTGTCCCTAAACATAAGCAATACATTC
AACATTCAATAGAAACGGGTCTTATATTTCGCGACAGAGTGGTGTCGAGG
AAGCTTATTATACTGACTATTTGGATGTGTGTTATAGAGGAGGTTATAAG
AGATACTATGATACGAGTCACAGCAAATGAATTGGGCGTGCGTTATGTGC
AGATTGCACCTGAATTGTTTTTTGTGCAGGCTGTGTGTGGCCAATTTCAT
CCTTGCCCGTCGACCCAGACCAAGCCACCCCAGACACACCCCTAG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1057:48890..49234+

>mRNA_S-latissima_F_contig1057.488.1 ID=mRNA_S-latissima_F_contig1057.488.1|Name=mRNA_S-latissima_F_contig1057.488.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=690bp|location=Sequence derived from alignment at S-latissima_F_contig1057:48890..49234+ (Saccharina latissima SLPER63f female)
GATACTTTTCTATTTACAGGCGAGTACAGGCACTACTACAGCAGTAGTAA
CGTTCTTCTTAGTATCTACCACTCTGTCCCTAAACATAAGCAATACATTC
AACATTCAATAGAAACGGGTCTTATATTTCGCGACAGAGTGGTGTCGAGG
AAGCTTATTATACTGACTATTTGGATGTGTGTTATAGAGGAGGTTATAAG
AGATACTATGATACGAGTCACAGCAAATGAATTGGGCGTGCGTTATGTGC
AGATTGCACCTGAATTGTTTTTTGTGCAGGCTGTGTGTGGCCAATTTCAT
CCTTGCCCGTCGACCCAGACCAAGCCACCCCAGACACACCCCTAGGATAC
TTTTCTATTTACAGGCGAGTACAGGCACTACTACAGCAGTAGTAACGTTC
TTCTTAGTATCTACCACTCTGTCCCTAAACATAAGCAATACATTCAACAT
TCAATAGAAACGGGTCTTATATTTCGCGACAGAGTGGTGTCGAGGAAGCT
TATTATACTGACTATTTGGATGTGTGTTATAGAGGAGGTTATAAGAGATA
CTATGATACGAGTCACAGCAAATGAATTGGGCGTGCGTTATGTGCAGATT
GCACCTGAATTGTTTTTTGTGCAGGCTGTGTGTGGCCAATTTCATCCTTG
CCCGTCGACCCAGACCAAGCCACCCCAGACACACCCCTAG
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