mRNA_S-latissima_F_contig1055.474.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1055.474.1
Unique NamemRNA_S-latissima_F_contig1055.474.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1055.474.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 3.020e-74
Identity = 162/307 (52.77%), Postives = 193/307 (62.87%), Query Frame = 1 
Query:  232 MRRRVGIVVQETMRNRLTGSGEQGKGKGVAGSSVTGGKQDATTAAYLKAFQAAVASKVVSMCDIQDAREKLEAEDFMKEIEIFGEEMQAXXXXXXXTRARVAQLSASVCNDSLRAAEAEDDRACEILEANAEQARREMEAGGPLPTAGEEDGAGGDGGGEPG-------------GGFSGIDADVLEPKVSLLIGKLSELPGPLKAVLQEIPELTASLAKTVQSVEAAMGAGQSRTEALLGKAPPTPIPAAKA-------GXXXXXXXXGEERPPEEARANAREARVEQLRKEWEAAGVGTFSGIFS 1092
            MR RV  VV ET +  L G  + G   GVA   V    QDA T AYL+AFQAAVA KV  +C++QDARE  E ++ + EI  F  +++A       TRARVA+LSA  C D+LR +EA DDRAC +LEA+   ARRE E GGPLP    +D A                      G F G++  V+EPKVS LIGK++ELPGPLK+VLQEIPELTASLA +VQ  EAA+ AGQSRTEALLGKAPPTP+ + K         XXX      E  PPE+ARA AREARV+Q RKEWEA GVG   GIF+
Sbjct:    1 MRYRVSTVVDETTKKSLAGK-KSGSSAGVA---VVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLR-IDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1055.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI3.020e-7452.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1055contigS-latissima_F_contig1055:12168..13262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Exons1
Model size1095
Cds size1095
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.5448794-CDS-S-latissima_F_contig1055:12167..132621622815430.5448794-CDS-S-latissima_F_contig1055:12167..13262Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1055 12168..13262 +
1693924879.3183038-CDS-S-latissima_F_contig1055:12167..132621693924879.3183038-CDS-S-latissima_F_contig1055:12167..13262Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1055 12168..13262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1055.474.1prot_S-latissima_F_contig1055.474.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1055 12168..13262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1055.474.1

>prot_S-latissima_F_contig1055.474.1 ID=prot_S-latissima_F_contig1055.474.1|Name=mRNA_S-latissima_F_contig1055.474.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=365bp
PERKQTEVVLREAQASSLRPKVGAMDSSSRKRKAPSTASPVAAAPAAAAA
AATAATAAAAGTTQQPLVPATDEGLKAMRRRVGIVVQETMRNRLTGSGEQ
GKGKGVAGSSVTGGKQDATTAAYLKAFQAAVASKVVSMCDIQDAREKLEA
EDFMKEIEIFGEEMQAAREKLRATRARVAQLSASVCNDSLRAAEAEDDRA
CEILEANAEQARREMEAGGPLPTAGEEDGAGGDGGGEPGGGFSGIDADVL
EPKVSLLIGKLSELPGPLKAVLQEIPELTASLAKTVQSVEAAMGAGQSRT
EALLGKAPPTPIPAAKAGGGGGQGAGGEERPPEEARANAREARVEQLRKE
WEAAGVGTFSGIFS*
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mRNA from alignment at S-latissima_F_contig1055:12168..13262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1055.474.1 ID=mRNA_S-latissima_F_contig1055.474.1|Name=mRNA_S-latissima_F_contig1055.474.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1095bp|location=Sequence derived from alignment at S-latissima_F_contig1055:12168..13262+ (Saccharina latissima SLPER63f female)
CCTGAGAGGAAGCAGACCGAGGTCGTACTGCGAGAAGCCCAAGCTAGCTC
TCTAAGACCGAAAGTCGGGGCCATGGACTCGTCCTCAAGAAAGCGAAAAG
CTCCTTCGACTGCCTCCCCCGTCGCTGCTGCTCCTGCTGCTGCTGCTGCC
GCTGCTACCGCTGCTACCGCTGCTGCTGCTGGCACTACTCAACAGCCGTT
GGTCCCGGCAACTGACGAAGGCCTGAAAGCAATGCGCCGTAGGGTAGGCA
TCGTGGTGCAGGAGACCATGCGGAATAGGTTGACCGGTTCGGGGGAGCAG
GGGAAGGGTAAGGGCGTGGCAGGCAGCAGCGTGACGGGAGGGAAGCAAGA
TGCAACGACAGCGGCCTACCTGAAAGCGTTCCAAGCCGCCGTTGCGTCCA
AAGTGGTGTCCATGTGCGACATCCAGGACGCCCGCGAGAAGCTCGAGGCG
GAAGACTTCATGAAAGAGATCGAGATTTTCGGCGAAGAAATGCAAGCCGC
GAGGGAGAAGCTGCGCGCCACCCGCGCGCGCGTCGCCCAGCTCTCCGCCT
CCGTCTGCAACGACTCTCTCCGGGCTGCGGAAGCCGAGGACGACCGCGCC
TGCGAGATCCTCGAGGCAAACGCCGAGCAAGCCCGGAGAGAGATGGAGGC
GGGCGGGCCGCTGCCGACAGCAGGGGAGGAAGACGGTGCTGGAGGAGACG
GCGGTGGCGAACCCGGTGGCGGATTCTCCGGGATCGACGCGGACGTCCTC
GAGCCCAAGGTGTCCCTGCTGATAGGCAAGCTCTCGGAGCTGCCGGGCCC
GCTGAAAGCCGTTCTGCAGGAGATCCCCGAGCTGACGGCGTCGCTGGCGA
AGACCGTACAGTCGGTGGAGGCGGCGATGGGGGCCGGGCAGAGTCGCACG
GAGGCGTTACTGGGAAAAGCGCCGCCTACACCGATCCCCGCGGCCAAAGC
GGGTGGCGGCGGGGGGCAGGGGGCGGGGGGTGAGGAGCGTCCACCCGAGG
AGGCGCGCGCGAACGCGCGAGAGGCTCGCGTGGAGCAGTTGAGGAAGGAG
TGGGAGGCGGCGGGGGTGGGCACTTTCAGCGGCATCTTCAGCTGA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1055:12168..13262+

>mRNA_S-latissima_F_contig1055.474.1 ID=mRNA_S-latissima_F_contig1055.474.1|Name=mRNA_S-latissima_F_contig1055.474.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2190bp|location=Sequence derived from alignment at S-latissima_F_contig1055:12168..13262+ (Saccharina latissima SLPER63f female)
CCTGAGAGGAAGCAGACCGAGGTCGTACTGCGAGAAGCCCAAGCTAGCTC
TCTAAGACCGAAAGTCGGGGCCATGGACTCGTCCTCAAGAAAGCGAAAAG
CTCCTTCGACTGCCTCCCCCGTCGCTGCTGCTCCTGCTGCTGCTGCTGCC
GCTGCTACCGCTGCTACCGCTGCTGCTGCTGGCACTACTCAACAGCCGTT
GGTCCCGGCAACTGACGAAGGCCTGAAAGCAATGCGCCGTAGGGTAGGCA
TCGTGGTGCAGGAGACCATGCGGAATAGGTTGACCGGTTCGGGGGAGCAG
GGGAAGGGTAAGGGCGTGGCAGGCAGCAGCGTGACGGGAGGGAAGCAAGA
TGCAACGACAGCGGCCTACCTGAAAGCGTTCCAAGCCGCCGTTGCGTCCA
AAGTGGTGTCCATGTGCGACATCCAGGACGCCCGCGAGAAGCTCGAGGCG
GAAGACTTCATGAAAGAGATCGAGATTTTCGGCGAAGAAATGCAAGCCGC
GAGGGAGAAGCTGCGCGCCACCCGCGCGCGCGTCGCCCAGCTCTCCGCCT
CCGTCTGCAACGACTCTCTCCGGGCTGCGGAAGCCGAGGACGACCGCGCC
TGCGAGATCCTCGAGGCAAACGCCGAGCAAGCCCGGAGAGAGATGGAGGC
GGGCGGGCCGCTGCCGACAGCAGGGGAGGAAGACGGTGCTGGAGGAGACG
GCGGTGGCGAACCCGGTGGCGGATTCTCCGGGATCGACGCGGACGTCCTC
GAGCCCAAGGTGTCCCTGCTGATAGGCAAGCTCTCGGAGCTGCCGGGCCC
GCTGAAAGCCGTTCTGCAGGAGATCCCCGAGCTGACGGCGTCGCTGGCGA
AGACCGTACAGTCGGTGGAGGCGGCGATGGGGGCCGGGCAGAGTCGCACG
GAGGCGTTACTGGGAAAAGCGCCGCCTACACCGATCCCCGCGGCCAAAGC
GGGTGGCGGCGGGGGGCAGGGGGCGGGGGGTGAGGAGCGTCCACCCGAGG
AGGCGCGCGCGAACGCGCGAGAGGCTCGCGTGGAGCAGTTGAGGAAGGAG
TGGGAGGCGGCGGGGGTGGGCACTTTCAGCGGCATCTTCAGCTGACCTGA
GAGGAAGCAGACCGAGGTCGTACTGCGAGAAGCCCAAGCTAGCTCTCTAA
GACCGAAAGTCGGGGCCATGGACTCGTCCTCAAGAAAGCGAAAAGCTCCT
TCGACTGCCTCCCCCGTCGCTGCTGCTCCTGCTGCTGCTGCTGCCGCTGC
TACCGCTGCTACCGCTGCTGCTGCTGGCACTACTCAACAGCCGTTGGTCC
CGGCAACTGACGAAGGCCTGAAAGCAATGCGCCGTAGGGTAGGCATCGTG
GTGCAGGAGACCATGCGGAATAGGTTGACCGGTTCGGGGGAGCAGGGGAA
GGGTAAGGGCGTGGCAGGCAGCAGCGTGACGGGAGGGAAGCAAGATGCAA
CGACAGCGGCCTACCTGAAAGCGTTCCAAGCCGCCGTTGCGTCCAAAGTG
GTGTCCATGTGCGACATCCAGGACGCCCGCGAGAAGCTCGAGGCGGAAGA
CTTCATGAAAGAGATCGAGATTTTCGGCGAAGAAATGCAAGCCGCGAGGG
AGAAGCTGCGCGCCACCCGCGCGCGCGTCGCCCAGCTCTCCGCCTCCGTC
TGCAACGACTCTCTCCGGGCTGCGGAAGCCGAGGACGACCGCGCCTGCGA
GATCCTCGAGGCAAACGCCGAGCAAGCCCGGAGAGAGATGGAGGCGGGCG
GGCCGCTGCCGACAGCAGGGGAGGAAGACGGTGCTGGAGGAGACGGCGGT
GGCGAACCCGGTGGCGGATTCTCCGGGATCGACGCGGACGTCCTCGAGCC
CAAGGTGTCCCTGCTGATAGGCAAGCTCTCGGAGCTGCCGGGCCCGCTGA
AAGCCGTTCTGCAGGAGATCCCCGAGCTGACGGCGTCGCTGGCGAAGACC
GTACAGTCGGTGGAGGCGGCGATGGGGGCCGGGCAGAGTCGCACGGAGGC
GTTACTGGGAAAAGCGCCGCCTACACCGATCCCCGCGGCCAAAGCGGGTG
GCGGCGGGGGGCAGGGGGCGGGGGGTGAGGAGCGTCCACCCGAGGAGGCG
CGCGCGAACGCGCGAGAGGCTCGCGTGGAGCAGTTGAGGAAGGAGTGGGA
GGCGGCGGGGGTGGGCACTTTCAGCGGCATCTTCAGCTGA
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