mRNA_S-latissima_F_contig1054.471.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1054.471.1
Unique NamemRNA_S-latissima_F_contig1054.471.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A6H5JEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE6_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 4.700e-73
Identity = 134/185 (72.43%), Postives = 153/185 (82.70%), Query Frame = 3 
Query:   15 EPSIKVRMLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMRDRSGVDTLVAAELKSI 569
            E  I VRMLSSMRDYRSYGALRRTALMVVAYN  P++LRELR+EF +FDTE NG+ISR EM+ AL+QRGV+ EEIEELF+SLD+D+SGDIHYLEFLAATIEAVG  EE RLR A           ITV NL+EI+GPSYDDEAI KTL+EADAG DGRV W++FLLLMRDR GV+TLVA E K++
Sbjct:  456 EAPISVRMLSSMRDYRSYGALRRTALMVVAYNQSPDKLRELRNEFVDFDTERNGKISRGEMRTALSQRGVSPEEIEELFESLDVDQSGDIHYLEFLAATIEAVGATEEVRLRQAXXXXXXXXXXSITVDNLREIMGPSYDDEAIHKTLEEADAGHDGRVEWEDFLLLMRDRRGVETLVAQERKAV 640
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: D8LCI3_ECTSI (Calcium-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI3_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.300e-72
Identity = 133/185 (71.89%), Postives = 153/185 (82.70%), Query Frame = 3 
Query:   15 EPSIKVRMLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMRDRSGVDTLVAAELKSI 569
            E  I VRMLSSMRDYRSYGALRRTALMVVAYN  P++LRELR+EF +FDTE NG+ISR EM+ AL+QRGV+ EEIEELF+SLD+D+SGDIHYLEFLAATIEAVG  EE RLR A           ITV NL+EI+GPSYDDEAI KTL+EAD G+DGRV W++FLLLMRDR GV+TLVA E K++
Sbjct:  524 EAPISVRMLSSMRDYRSYGALRRTALMVVAYNQSPDKLRELRNEFVDFDTERNGKISRGEMRTALSQRGVSPEEIEELFESLDVDQSGDIHYLEFLAATIEAVGATEEVRLRQAXXXXXXXXXXSITVDNLREIMGPSYDDEAIHKTLEEADTGQDGRVEWEDFLLLMRDRRGVETLVAQERKAV 708
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: D8LMX0_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.440e-35
Identity = 74/167 (44.31%), Postives = 113/167 (67.66%), Query Frame = 3 
Query:   21 SIKVRMLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMR 521
            ++   +  SM  +  YG L++ ALMV A+    E +++L+D F E DTE NG IS  E++  L + GV   E++ +F ++D+D SG +HY+EFLAATIEA G +EE+ L+ AFERLD D +GFI+  NLKE++G +YD+  I K L+E D+   G + W++FL++M+
Sbjct:  492 AVNGSIAKSMHRFADYGELKKAALMVTAFQLDREEIKQLKDAFLEVDTEGNGAISLEELRIVLREHGVDGAEVDRVFGAVDMDSSGHLHYMEFLAATIEARGYIEEESLKDAFERLDVDSTGFISRDNLKEVLGKTYDNGLIDKMLEEGDSSMSGSIEWEDFLIMMK 658
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A835ZEJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.610e-33
Identity = 77/167 (46.11%), Postives = 109/167 (65.27%), Query Frame = 3 
Query:   21 SIKVRMLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMR 521
            ++ V++ +S+R +  YG L++ ALM+ A+  + E L  L+  F E DTE NG I+  E+QA L ++GV   EIE LF S+D DRSG   Y+EFLAAT+EA G +EEDRL   F+RLD D SG+I+ ANLK ++GP Y +  +   ++E D    GR+  D F+ LMR
Sbjct:  429 NVDVKIATSIRSFAGYGELKKAALMITAFQLEKEELHHLKAAFLEIDTEENGVITYPELQAVLRKQGVDDAEIERLFASMDQDRSGLCSYMEFLAATLEARGFIEEDRLLETFQRLDVDNSGYISRANLKVLMGPLYPEAMLDAMMKEGDPMNTGRISLDSFVRLMR 595
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A835YZE6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.360e-33
Identity = 71/161 (44.10%), Postives = 109/161 (67.70%), Query Frame = 3 
Query:   36 MLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLM 518
            ++ S++ Y SYG +RR ALMVVA+   PE++R+LRD F  +DT  +G I+  E+Q AL Q G++ ++I E+F  +D+D SG + Y EFLAAT+E +G + E+++  AF RLD D +G IT   L++++G  Y  E +   + EAD  +DGR+ +DEF+ LM
Sbjct:  158 IMCSLQRYSSYGKMRRAALMVVAHQCSPEQIRDLRDVFTSYDTAEDGTITALELQQALLQHGMSAQQIGEIFSGVDMDNSGKLDYTEFLAATVETMGFLAEEKIMEAFNRLDEDGNGVITDMELRKLLGKDYKFEDVEAMIAEADKNRDGRIDFDEFMRLM 318
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A6V1R4A6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R4A6_HETAK)

HSP 1 Score: 139 bits (351), Expect = 1.570e-32
Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 3 
Query:   21 SIKVRMLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAV---GGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMR 521
            S    M+ +MR+Y  YG  +RTALM++AY   P +LR LR  F  FDTE NG ISR E+  AL    V  EEIE+ ++S+D  R G I+Y EFLAAT++A+   GG+  D+L   F+R D+D+SG I+  NL +I+G +Y    +   L EAD  KDG++ ++EF  +M+
Sbjct:  348 SFSNSMVKAMRNYSEYGLFQRTALMMLAYELSPAKLRALRHAFVSFDTEMNGVISRQELSDALRTMKVPEEEIEKFYQSMDHGRDGQINYCEFLAATVQAIAGEGGLAMDQLAELFDRFDSDKSGAISQKNLADILGETYTRAEVEAVLNEADIKKDGQIDFEEFCTIMK 517
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A7S2RV54_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV54_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.000e-32
Identity = 69/161 (42.86%), Postives = 107/161 (66.46%), Query Frame = 3 
Query:   36 MLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLM 518
            ++ S+++Y  YG LR+ ALMV+A+   PE + +LR+ F E D    G I+  EM+  L    +   EIE +F  +D+D++  I Y EFLAAT+ A+G + +++L  AF+RLD+D+SG+IT  NL+EI+G +Y  + + + +QEAD   DGRV ++EFL LM
Sbjct:   99 IVHSLKEYGQYGKLRKAALMVIAHQASPEHVEKLRNAFHEIDINREGHITLEEMKQVLIDYDINSSEIEAIFDGVDVDQTRKIGYTEFLAATVSAMGFVRQEQLTEAFDRLDSDDSGYITKENLREILGSAYVADEVDRMIQEADVKHDGRVDFEEFLNLM 259
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A7S2D602_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D602_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.900e-32
Identity = 66/149 (44.30%), Postives = 102/149 (68.46%), Query Frame = 3 
Query:  114 KPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMRDRSGVDTLVAAEL 560
            KPE++ +LR  F EFD+   G I+  EM+ AL +  ++  E++E+F+ LD+DR+  I Y EFLAAT+EA+G   E++L  AF+RLD+D+SGFI+  NLKEI+G +YD + + + + E D  K+G+V +DEFLLLM  +   + +  A +
Sbjct:    1 KPEQISQLRQAFHEFDSGHEGVITLEEMKIALGKYAISEAEVQEIFEGLDVDRTNQISYTEFLAATVEAMGLSREEQLAEAFDRLDSDDSGFISRENLKEILGSAYDPKEVERMIAEGDFKKNGQVDYDEFLLLMNQQHEREVVEVAAI 149
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A7S1YZ71_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ71_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.100e-31
Identity = 65/158 (41.14%), Postives = 108/158 (68.35%), Query Frame = 3 
Query:   57 YRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMRDRS 530
            Y S    ++ ALMVVA+    E + ELR  F ++DT ++G I+ +E + AL+    + E++E LF ++D+D++G I+Y EFLAAT+E VG +EEDRL  AF+++D D++G+I+  NLK+++G  Y  E + + ++E D  KDG++ +DEFL   R+++
Sbjct:  127 YASQSDFKKMALMVVAHKTTSEEVAELRSVFDQYDTGNDGTITLDEFKMALSDSNYSEEDVEALFDNVDVDKNGKIYYTEFLAATLEVVGRIEEDRLAEAFDKIDDDDTGYISGKNLKKLLGKDYTPEKVAEIMKEVDTNKDGKISFDEFLRGFREKN 284
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BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Match: A0A1Z5JX69_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JX69_FISSO)

HSP 1 Score: 137 bits (345), Expect = 1.800e-31
Identity = 74/172 (43.02%), Postives = 108/172 (62.79%), Query Frame = 3 
Query:   42 SSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRISRNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGMEEDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDGRVGWDEFLLLMRDRSGVDTLVAAE 557
            +S+  +  YG L++  LMV+AY    E +  L+D F  FD   NG I  NE   AL+    A EEI  LF  +D+D +G++HY+EFLAATIEA+G ++E+R+  AF+RLD+D++G+ITVANL++ +G     E + K + EAD   D R+ ++EFL +      VDT V  E
Sbjct:  425 ASIEAFVGYGTLKKLGLMVIAYRSTSEEIGFLKDLFVRFDKMQNGEIDENEFALALSAYNYAPEEISNLFHGIDIDGTGNVHYIEFLAATIEALGPIDEERIAEAFDRLDSDDTGYITVANLRDFLGDEVPTEYLEKVIDEADLLHDHRISYEEFLEMWN----VDTEVQLE 592
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1054.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEE6_9PHAE4.700e-7372.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCI3_ECTSI3.300e-7271.89Calcium-dependent protein kinase n=1 Tax=Ectocarpu... [more]
D8LMX0_ECTSI1.440e-3544.31N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX0_ECT... [more]
A0A835ZEJ0_9STRA3.610e-3346.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZE6_9STRA4.360e-3344.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1R4A6_HETAK1.570e-3244.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RV54_9STRA4.000e-3242.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D602_9STRA4.900e-3244.30Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1YZ71_9STRA1.100e-3141.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JX69_FISSO1.800e-3143.02Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1054contigS-latissima_F_contig1054:75517..80182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2850.Phatr1864
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categorymitochondrion
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2XEB3@2836,KOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons6
Model size1318
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1054.471.1prot_S-latissima_F_contig1054.471.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1054 76260..80147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0374024-UTR-S-latissima_F_contig1054:75516..762591622815430.0374024-UTR-S-latissima_F_contig1054:75516..76259Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 75517..76259 -
1693924878.9930851-UTR-S-latissima_F_contig1054:75516..762591693924878.9930851-UTR-S-latissima_F_contig1054:75516..76259Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 75517..76259 -
1622815430.1179707-UTR-S-latissima_F_contig1054:80147..801821622815430.1179707-UTR-S-latissima_F_contig1054:80147..80182Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 80148..80182 -
1693924879.08184-UTR-S-latissima_F_contig1054:80147..801821693924879.08184-UTR-S-latissima_F_contig1054:80147..80182Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 80148..80182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0485497-CDS-S-latissima_F_contig1054:76259..762711622815430.0485497-CDS-S-latissima_F_contig1054:76259..76271Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 76260..76271 -
1693924879.015757-CDS-S-latissima_F_contig1054:76259..762711693924879.015757-CDS-S-latissima_F_contig1054:76259..76271Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 76260..76271 -
1622815430.0582488-CDS-S-latissima_F_contig1054:76846..769481622815430.0582488-CDS-S-latissima_F_contig1054:76846..76948Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 76847..76948 -
1693924879.0264053-CDS-S-latissima_F_contig1054:76846..769481693924879.0264053-CDS-S-latissima_F_contig1054:76846..76948Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 76847..76948 -
1622815430.0718296-CDS-S-latissima_F_contig1054:77597..777231622815430.0718296-CDS-S-latissima_F_contig1054:77597..77723Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 77598..77723 -
1693924879.0361035-CDS-S-latissima_F_contig1054:77597..777231693924879.0361035-CDS-S-latissima_F_contig1054:77597..77723Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 77598..77723 -
1622815430.0823727-CDS-S-latissima_F_contig1054:78254..783231622815430.0823727-CDS-S-latissima_F_contig1054:78254..78323Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 78255..78323 -
1693924879.0461388-CDS-S-latissima_F_contig1054:78254..783231693924879.0461388-CDS-S-latissima_F_contig1054:78254..78323Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 78255..78323 -
1622815430.0922096-CDS-S-latissima_F_contig1054:78994..790961622815430.0922096-CDS-S-latissima_F_contig1054:78994..79096Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 78995..79096 -
1693924879.0610156-CDS-S-latissima_F_contig1054:78994..790961693924879.0610156-CDS-S-latissima_F_contig1054:78994..79096Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 78995..79096 -
1622815430.1035988-CDS-S-latissima_F_contig1054:80018..801471622815430.1035988-CDS-S-latissima_F_contig1054:80018..80147Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 80019..80147 -
1693924879.0720317-CDS-S-latissima_F_contig1054:80018..801471693924879.0720317-CDS-S-latissima_F_contig1054:80018..80147Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 80019..80147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1054.471.1

>prot_S-latissima_F_contig1054.471.1 ID=prot_S-latissima_F_contig1054.471.1|Name=mRNA_S-latissima_F_contig1054.471.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=180bp
MLSSMRDYRSYGALRRTALMVVAYNHKPERLRELRDEFAEFDTESNGRIS
RNEMQAALAQRGVAHEEIEELFKSLDLDRSGDIHYLEFLAATIEAVGGME
EDRLRLAFERLDTDESGFITVANLKEIVGPSYDDEAIRKTLQEADAGKDG
RVGWDEFLLLMRDRSGVDTLVAAELKSIC*
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mRNA from alignment at S-latissima_F_contig1054:75517..80182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1054.471.1 ID=mRNA_S-latissima_F_contig1054.471.1|Name=mRNA_S-latissima_F_contig1054.471.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=4666bp|location=Sequence derived from alignment at S-latissima_F_contig1054:75517..80182- (Saccharina latissima SLPER63f female)
GGGAGGAGTTTCGAGAGCCGTCGATCAAGGTGCGGATGCTGTCGAGCATG
CGGGACTACCGCTCGTACGGGGCCCTCCGGCGAACGGCCCTGATGGTTGT
GGCGTACAACCACAAGCCGGAGAGGCTGCGGGAGCTGCGGGACGAGTTCG
CGGAGTTCGATACGGTGAGGGGGGAGATTGCGCGCAGCTATTATGATAGA
CGATATATATACGGGATGTACATCCTGCATGAGGACATATATAACCCGTA
AGTACGCGCGATCGAAGTATCACACTCAGCTAGCAAAGATGAGTTTCGAC
GAAATCCTCGATCTCACAGCTGTTTTTTTTTTTTTTTTTTTTTTTAAATA
TATACTGAAGTATACGACCTAGGGAGTACACCGTATATATATGTGACCTC
CCTTGAGTTCCACAGCTGTCAGATTGTGTTCTCCTCAAAACCCGCTGTTC
GCGCGATGGAAGTATCCCACGCAGCTTGCAAAGATGAGTTTTGACGAAAT
CCTCGATCTCACGGCTGTCGTTTTTTTTTTCTTCTCGATATACGACGTAG
GGGTACTATACGTACGTATCATCTGTTTGGCCAAATATAAGCACCAATTG
TATTCGACATTCATAATATACAAACGATATTTCCCTATAGCTCAGCACAG
CCCGGGCTGCTTCACGTGGTCGTTGATGCAGTCAGTGAATTTTCTTTTCG
ACTCCCCCCCCCCCCCCCTGGAAGTGGCCACACCGGAAATTAAATCACCT
CATTGAAGCTGTCATCCATATGCAAGTTCGCCTCACAAGCGGTTCTTAGT
AGGATGCAGCTCTCACCCTTTATGCGAGTCGCCGAACACCTCACGGCGCT
TCGCAAAGCTTGGTGCTAGCTATATCTGCCTGGTCGGTGAGAACCCCACA
TGCTCCGTCCCGGCATTGCAGGGATGCGAGGGTCTATGGTCATATACGAC
TACGGCCATGCATGAATATGAAGTACGTATATACACCTCCCCGGACCCCC
CTCCACTTTCGTGCATCATTTTTTTTTGTTCTTCTTCTTGTATTTTCTTG
TATTTTTCTGTTTGTTTTTTTTTTTTTTTCGTACAGGAGAGCAACGGTAG
GATCAGCAGGAACGAGATGCAGGCGGCGCTCGCGCAGCGAGGGGTCGCTC
ACGAGGAAATCGAGGAGCTCTTCAAGAGCCTCGACCTGGTGAGAGAAGCT
GAGCTGATATATTGTCACACCAACAAGCCGTCGCCTTGGGGTGGCAAGTG
GCAAGTGACCCTGGTGGCGGCGGTTTCACGCTACGAGTAGCGCCCTCCGC
CGGTCTGCCTATTCTCCTCTTTCTCCTCAACCAAAGAGCGGCAAACCACG
TTTTTTTCTTTCTTTTTTTCCCCTTTTTTTTCTGTTTAGCGCGTAGGTTT
ACAGTGGTTCTCCGAACCCCGAGTACTCCCTCACTTGCGCGGTTGTTGCT
GCTGCTCGGGCGCCCCGAAATCGCTCCGCTCGACCGCTCCCCGCCGCACA
ACCTCTTCCCTTCCCTTCCCTTGTAGAGGTTTCGTATATACTTCGTATGT
CCCAACGACGACAAGAACAACAACGCTATCAATAGCAACAACACTAGTAG
CAACAACAACAACAGCTGTTTCTTATTTCCTGTTTTACATGCCTATGAAC
TCCTTGTTTCGTGCCTTTTTTCGTGAGCACGAGCTATTAATAGATTGTTC
CAAGAAACTATACACTCGTATTTCAAGAGCACACACCAACCAGTTCACCG
CGTTTTCCAGCACCGTTGGAGTGCCCAATCCAATATTTTTGTACCACCCC
TCGCCCCCGCCCCCCCCCCCCCCCCCGCCCCCGCCCGCCCCTTCCACCCA
CGCGATCAGGACCGGAGCGGCGACATCCACTACCTGGAGTTCCTCGCCGC
GACAATAGAAGCTGTCGGGGGCATGGAGGTAGGTAGTGGGCGGTGGGTGG
TGGGTGGGCGGGAATCAGGTTTTGTTTTCTTGCCACTCGGCATGTTGTTT
GGATTGGCCGCGACCGAAACGATGCCGTCCGGCGAGGCCCCTGCGAATTG
ACGCGACGGCGTGGTGTCCATCGGCTATATCGGCTGCTGCTTATTGTTCC
TTCTTGCCGGTGGGGGTGGTGGAGGTGGCGGTGGTGTTAGTGATGGTGGC
AGTGTTGGTGGCGGCGTGCTGGTTGTTGTTGCTAGTGTTGGTGTTGGGGT
TGGTGTTGGTGTTGGTGTTGGGGTTGGCGTTGGTGTTGGTGTTGGTGTTG
GTATTGTTGTTGTTGTTAGTGTCAGTTAGTGTCAGTTAGTGTAAGTGTTG
ATGTTGTTGTTGTCGTTGTTGTTACCGTACTATGATGTTGTTTTGTAACA
GTTAAGATTCATTTCTCGCGCCTGACAAAACTCTTGTACTCGTAGCGCTG
ATTTCTCGCGTTATCTCCCCCCCCCCCCCCCCCCCCCCTATCGGTGCACT
GGGCGGCAGGAGGATCGACTCCGACTCGCGTTCGAGCGCCTCGACACCGA
TGAAAGCGGTTTCATTACCGTCGCGAACCTGAAGGAGATAGTGGGTCCCA
GCTACGACGACGAAGCTATCCGGAAAACGTTACAGGTGCGGCGATGAAAA
GGGAGTTAACGTCACGCTTGAGTGTTTCTCGTTCCTTTGCTCAGTTTAAT
TTTCGGTGTGTTGTTTGTCTGTCTCGTCTTGTCCGTCCGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCT
TTTTTTGTATGTTTGTGTCTGTCTTATCTGTCTTTTTGTCGTTGTTGCGG
TCGGTACGAATGGACTGTCTGTTCTGTCTGTCTGTCTGTCTGTTTGTCCT
TATGTTGGTCTGTCTGTGTGTGTCTGTTCTGTCTGTTTGTTTTGTCCGTC
TGTCCGTCTGTTTTGTCCGTCTGTTGGTCTATCTGTCTGTCTGTCTGTGT
GTTCTGTCTGTCTGTCTTTCGACGCCTTCTTTCAGTTCAGCCCTCCATTT
TTTACCGGTAACTGCAACTACGCAACCACGGTTTACTTTACCGCCTTCGC
CGACAGTCGTTTAATACGAATTTACACTACCTTCACTACTGAGAATTGTA
TTTCATACGTTAACCTCGCTTGGGTTCCTTCCATGCCTCCTTCCCCCCCC
CCCTCGTCCGTTCTGTCGCGCACCACAAATGCAGGAGGCGGACGCCGGAA
AAGACGGGCGGGTAGGGTGGGACGAGTTCCTCCTGCTCATGCGCGACCGG
AGCGGTGTGGACACCCTCGTGGCGGCAGAACTAAAGGTATCCCCCCCCCC
CCCCCCGGCTTCGCGCTTGACGCAAGCAAATGCATTGCCTACCTGGCTGT
CTGGTCGGTCAAAACCCGACGTGCCCCGTGTTGGTCGGCATGTTAGGGAT
GTAACGGTCTATGGCCATACGACTACGGCCATGCATAACATGAGTACCCC
CCCCCCCCTCCCCACCCCTCGCACTGCCCTTGGGGCTCATTTGTTGTATG
TCGGGACGACAGATTGGGGGGGGGGGGGGTTTGAGTGCTCTTCCTCAGCA
GCAACGTAATGGTAGGGAGACGAGCGCACAATCTGCACACACGGGGCCGC
GCTAAAGTGTGCCGCCGCCCCCCCCCCCCCCCCCCACATGTACTACGCTA
CCACCACTACCAATACCACCATTTCCACCGCCGCCATCGCTGCCGCTACC
GCCACCGCCACCCCTACGACTGGGGCTGACACCATTAACCCCCCCCGGCG
TTACGACTACGGACATGCATGACAATGAGTACCCCCCCCCCCCCCCCCCT
CCCCTCCCCCCCACCCCCCATCTTCTCTCCCCTGCTCTCCTTTGGTTTCC
CAAAATGACAGTCGATCTGCTGAAAAATGGAGAGGGGAGGAGGTGTGTGT
GGGGAGCGTGACGCCCGCGTCGTCACCCTGTGAACAGACGAGCGCCTGCG
ACAATCACGCCGTCGGACAACTCGTACGCCGGCGGGGCGGGATTCTTTTT
AAGCCCACCCACTAATGGTGTTTGGTGCACCAAGACGGCGTTTTGAAGTA
TCTGCTGGGCGCATTTCAGACAGAGCTGCCAGGTGCAGGTCGGCGGCGGC
GACAGCAGCAGAGGCAGCGGCAGCAGCAGCAGCAGCAGAAGCAGCAGAAG
CAGAAGCAGCAGCAGCAGGAGTAGTGGTGGCGGCGATGGCGAGCGAGAAT
TGTCGATGGCTCGAGAGCCGGTGGCCGCCGTTGGCATTATGTGGTTGACT
TGGGGGGGACTTGAAAACATAGGGGGCTTTGGCCCGGCTCGGGTGATAGA
AACCTCCGTGCTGACCTATTTTTGCGCGCAGGGGCCCGCAGTTTCATCTG
TGTTCCTCCCCCTTTTGGGGGCAAATCGAGACGGTGACGGCTGCTGCGGA
CACCTGTTGTGCAAAGAGCATTTCAAGCGGTTGTGGGGATATATGGTTGT
CCAAGGGCCGTCGGTGCAAAGTGTTTCGCAAGAATTTGTGGGAATTGCTG
TTTTCGGGCATGTTTTTTCCCGAAATAGTTTTGGAATGGTTTTGTGCAAA
ACGATTGCGCGAAAGGGTTGTTCAATGATTCGAGCGATGGTTTTGTGTGC
AAAATGGTCGTGCAAG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1054:75517..80182-

>mRNA_S-latissima_F_contig1054.471.1 ID=mRNA_S-latissima_F_contig1054.471.1|Name=mRNA_S-latissima_F_contig1054.471.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1080bp|location=Sequence derived from alignment at S-latissima_F_contig1054:75517..80182- (Saccharina latissima SLPER63f female)
ATGCTGTCGAGCATGCGGGACTACCGCTCGTACGGGGCCCTCCGGCGAAC
GGCCCTGATGGTTGTGGCGTACAACCACAAGCCGGAGAGGCTGCGGGAGC
TGCGGGACGAGTTCGCGGAGTTCGATACGATGCTGTCGAGCATGCGGGAC
TACCGCTCGTACGGGGCCCTCCGGCGAACGGCCCTGATGGTTGTGGCGTA
CAACCACAAGCCGGAGAGGCTGCGGGAGCTGCGGGACGAGTTCGCGGAGT
TCGATACGGAGAGCAACGGTAGGATCAGCAGGAACGAGATGCAGGCGGCG
CTCGCGCAGCGAGGGGTCGCTCACGAGGAAATCGAGGAGCTCTTCAAGAG
CCTCGACCTGGAGAGCAACGGTAGGATCAGCAGGAACGAGATGCAGGCGG
CGCTCGCGCAGCGAGGGGTCGCTCACGAGGAAATCGAGGAGCTCTTCAAG
AGCCTCGACCTGGACCGGAGCGGCGACATCCACTACCTGGAGTTCCTCGC
CGCGACAATAGAAGCTGTCGGGGGCATGGAGGACCGGAGCGGCGACATCC
ACTACCTGGAGTTCCTCGCCGCGACAATAGAAGCTGTCGGGGGCATGGAG
GAGGATCGACTCCGACTCGCGTTCGAGCGCCTCGACACCGATGAAAGCGG
TTTCATTACCGTCGCGAACCTGAAGGAGATAGTGGGTCCCAGCTACGACG
ACGAAGCTATCCGGAAAACGTTACAGGAGGATCGACTCCGACTCGCGTTC
GAGCGCCTCGACACCGATGAAAGCGGTTTCATTACCGTCGCGAACCTGAA
GGAGATAGTGGGTCCCAGCTACGACGACGAAGCTATCCGGAAAACGTTAC
AGGAGGCGGACGCCGGAAAAGACGGGCGGGTAGGGTGGGACGAGTTCCTC
CTGCTCATGCGCGACCGGAGCGGTGTGGACACCCTCGTGGCGGCAGAACT
AAAGGAGGCGGACGCCGGAAAAGACGGGCGGGTAGGGTGGGACGAGTTCC
TCCTGCTCATGCGCGACCGGAGCGGTGTGGACACCCTCGTGGCGGCAGAA
CTAAAGTCGATCTGCTGATCGATCTGCTGA
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