mRNA_S-latissima_F_contig1054.468.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1054.468.1
Unique NamemRNA_S-latissima_F_contig1054.468.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1054.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1054contigS-latissima_F_contig1054:71804..72599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size796
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.8051584-UTR-S-latissima_F_contig1054:71803..719841622815429.8051584-UTR-S-latissima_F_contig1054:71803..71984Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 71804..71984 +
1693924878.852134-UTR-S-latissima_F_contig1054:71803..719841693924878.852134-UTR-S-latissima_F_contig1054:71803..71984Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1054 71804..71984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.8162725-CDS-S-latissima_F_contig1054:71984..725991622815429.8162725-CDS-S-latissima_F_contig1054:71984..72599Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 71985..72599 +
1693924878.8615305-CDS-S-latissima_F_contig1054:71984..725991693924878.8615305-CDS-S-latissima_F_contig1054:71984..72599Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1054 71985..72599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1054.468.1prot_S-latissima_F_contig1054.468.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1054 71985..72599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1054.468.1

>prot_S-latissima_F_contig1054.468.1 ID=prot_S-latissima_F_contig1054.468.1|Name=mRNA_S-latissima_F_contig1054.468.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=205bp
MKAAPQLPTQGNANYTIHTHQLIHTYRRNPATAVRLNKKKGTLSAFTAAA
AAAAAAWLAYQQHTPRTRSQKHTHSACTLCSHPSSRSCNCTYQALPRWHQ
DVDSKQQSPLFSHSLTHSPPPAKLIRENKFRDRRLRATYVRTCSKRVQHE
NTTPTGQAFYGNEKLTPKGERNKAPKKARSTHPSFLPSFLPSFHGVPLYV
HLISP
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mRNA from alignment at S-latissima_F_contig1054:71804..72599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1054.468.1 ID=mRNA_S-latissima_F_contig1054.468.1|Name=mRNA_S-latissima_F_contig1054.468.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=796bp|location=Sequence derived from alignment at S-latissima_F_contig1054:71804..72599+ (Saccharina latissima SLPER63f female)
GAGGAAAGTAGTCATGTAGATATTATTAAATAATGGTATGTACCCCAGGA
CATGAAAAAAAATAGGCGTGGTATGCTAACTACGTGAATAGACCCCAAAC
CCACCTCAACCTGCACCATGGTATCGCTCGCCCTGAGCACAAAAAACAAG
GTGTGGTGTTCACAAAATATAAAAAGACTAAATGAAAGCCGCCCCGCAAC
TGCCAACGCAAGGAAACGCCAACTATACTATACATACACACCAGCTTATA
CATACATATCGTAGAAATCCGGCTACTGCTGTAAGACTTAACAAAAAAAA
AGGAACACTATCAGCATTTACAGCAGCTGCAGCAGCAGCAGCAGCAGCAT
GGCTTGCTTACCAACAGCACACGCCGCGCACACGAAGCCAGAAGCACACG
CACTCTGCTTGCACTCTCTGCTCGCACCCCTCAAGCCGCAGCTGCAACTG
TACCTACCAGGCACTACCCCGCTGGCACCAAGACGTTGACAGCAAGCAGC
AGTCGCCGCTCTTTTCTCACTCACTCACTCACTCACCGCCGCCAGCCAAA
CTAATCAGAGAAAATAAATTTCGAGACAGGCGCCTCCGCGCTACGTACGT
ACGTACGTGCAGCAAGCGGGTGCAGCACGAGAATACGACCCCTACAGGCC
AGGCATTTTACGGGAATGAGAAGCTGACACCCAAAGGAGAGAGAAACAAG
GCGCCTAAAAAGGCGAGAAGTACTCATCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCACGGCGTACCGCTATATGTCCACCTGATAAGTCCG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1054:71804..72599+

>mRNA_S-latissima_F_contig1054.468.1 ID=mRNA_S-latissima_F_contig1054.468.1|Name=mRNA_S-latissima_F_contig1054.468.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1230bp|location=Sequence derived from alignment at S-latissima_F_contig1054:71804..72599+ (Saccharina latissima SLPER63f female)
ATGAAAGCCGCCCCGCAACTGCCAACGCAAGGAAACGCCAACTATACTAT
ACATACACACCAGCTTATACATACATATCGTAGAAATCCGGCTACTGCTG
TAAGACTTAACAAAAAAAAAGGAACACTATCAGCATTTACAGCAGCTGCA
GCAGCAGCAGCAGCAGCATGGCTTGCTTACCAACAGCACACGCCGCGCAC
ACGAAGCCAGAAGCACACGCACTCTGCTTGCACTCTCTGCTCGCACCCCT
CAAGCCGCAGCTGCAACTGTACCTACCAGGCACTACCCCGCTGGCACCAA
GACGTTGACAGCAAGCAGCAGTCGCCGCTCTTTTCTCACTCACTCACTCA
CTCACCGCCGCCAGCCAAACTAATCAGAGAAAATAAATTTCGAGACAGGC
GCCTCCGCGCTACGTACGTACGTACGTGCAGCAAGCGGGTGCAGCACGAG
AATACGACCCCTACAGGCCAGGCATTTTACGGGAATGAGAAGCTGACACC
CAAAGGAGAGAGAAACAAGGCGCCTAAAAAGGCGAGAAGTACTCATCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCACGGCGTACCGCTATATGTC
CACCTGATAAGTCCGATGAAAGCCGCCCCGCAACTGCCAACGCAAGGAAA
CGCCAACTATACTATACATACACACCAGCTTATACATACATATCGTAGAA
ATCCGGCTACTGCTGTAAGACTTAACAAAAAAAAAGGAACACTATCAGCA
TTTACAGCAGCTGCAGCAGCAGCAGCAGCAGCATGGCTTGCTTACCAACA
GCACACGCCGCGCACACGAAGCCAGAAGCACACGCACTCTGCTTGCACTC
TCTGCTCGCACCCCTCAAGCCGCAGCTGCAACTGTACCTACCAGGCACTA
CCCCGCTGGCACCAAGACGTTGACAGCAAGCAGCAGTCGCCGCTCTTTTC
TCACTCACTCACTCACTCACCGCCGCCAGCCAAACTAATCAGAGAAAATA
AATTTCGAGACAGGCGCCTCCGCGCTACGTACGTACGTACGTGCAGCAAG
CGGGTGCAGCACGAGAATACGACCCCTACAGGCCAGGCATTTTACGGGAA
TGAGAAGCTGACACCCAAAGGAGAGAGAAACAAGGCGCCTAAAAAGGCGA
GAAGTACTCATCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCACGGC
GTACCGCTATATGTCCACCTGATAAGTCCG
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