mRNA_S-latissima_F_contig1053.459.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1053.459.1
Unique NamemRNA_S-latissima_F_contig1053.459.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 1.070e-110
Identity = 170/217 (78.34%), Postives = 190/217 (87.56%), Query Frame = 3 
Query:    6 GGQRTIIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLKDRR 656
            GGQR+IIEVTTDEAVGVALALGRQ+YV+E+IWE  RVR KFVMDGDKMRLDL+N+EG D+ +  ++ A P QPPAW IKSRGAL+RMSVEEKR  LRA+GVRPPR+R LSESED DRDLEDL+LP MDEAVRRDVL+ARAWR GDFA AGELCA KSERHIVAEQLQ A+KD+D++LA ILM RLEILESCRMD TQD GSYQ+DLD DEWY  DRR
Sbjct:  202 GGQRSIIEVTTDEAVGVALALGRQVYVDEEIWEGGRVRVKFVMDGDKMRLDLDNVEGRDLSSTSDKEAPPVQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSESEDPDRDLEDLMLPRMDEAVRRDVLMARAWREGDFATAGELCAGKSERHIVAEQLQAALKDNDQDLASILMQRLEILESCRMDPTQDEGSYQRDLDVDEWYEADRR 418
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A835ZMI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMI0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.200e-39
Identity = 91/224 (40.62%), Postives = 132/224 (58.93%), Query Frame = 3 
Query:    6 GGQRTIIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWK---IKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLKDRRSSLG 668
            GG+  ++E   DEAVGVALA GR + +   ++E++ +   F+M+  +MRL+++ L G       +R   P          IKS     ++    KR  LR +GVRPPRRR  S +      L++L+LPL+DE VRRDV+L RA    D+A A +L    SER +V   L  A+++ D E A+ L ARLE+L + R D TQD GSY + LDADEWY+++R  ++G
Sbjct:  200 GGELAVVECAADEAVGVALAQGRALCIERSLFEAASLPANFIMEDGRMRLNID-LRG-------QRAMPPXXXXXXXXADIKSAARYFKLDSAAKRAVLRGAGVRPPRRRMASAAR-----LDELLLPLLDETVRRDVMLRRALAREDYAAAAQLGGAGSERAVVKHALADAVEEEDYEAANRLRARLEVLTALRADVTQDEGSYDRYLDADEWYVRERMRAMG 410
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7S2RI23_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI23_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.530e-28
Identity = 90/242 (37.19%), Postives = 136/242 (56.20%), Query Frame = 3 
Query:    9 GQRT--IIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVM----DGDKMRLDLNNLE-GD---------DMFADRERV-ATPEQPPAWKIKSRGALTRMSVEEKRGTLRAS----GVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLKDRRSSLGL 671
            GQR    ++ +  EA+G+A+A    +Y+ E++WES+ VR + V+     G  + L++   E GD         + FA+ E   A P Q  AW+++S   L  +S+E+K  TL AS    G  P  R+   E    D  L+DL+LP+MDEAVRR+V+L RA    D+A+   L A+KS R  + +++Q A    +E++A  L   LE+  + R D TQD G Y   LD D+WY +DRR ++GL
Sbjct:  109 GQREERCVDCSAAEALGLAIAARVPLYIEEEVWESTAVRAEPVLLQSSAGPVLTLEVLEEELGDAGLFLFQPGEAFAEAEGGGAGPRQ--AWELESAEDLRGLSLEDKARTLLASENYQGPLPRARKVRLEG---DGVLDDLLLPVMDEAVRREVMLERAIAQRDWAEIQRLSADKSVRSKLRDEVQRAEDSGEEDVARRLRRELELASTLRADITQDSGDYSSFLDKDDWYERDRRRAMGL 345
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7S0L3C8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L3C8_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 4.640e-28
Identity = 78/207 (37.68%), Postives = 109/207 (52.66%), Query Frame = 3 
Query:   21 IIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWY 641
            + E T DEA+G+ALALG ++YV E +W ++   P + +   K+RLD+ +         R R      P  W+++S   L  M+ E       A+G+R PR R LS        L  ++ PL+DEAVRRDV + RA +A DF +A  L A  S R  V  QL+ A+ +     A  L   L I  S R D TQD G+Y + LD D+WY
Sbjct:  237 LCECTVDEALGIALALGGEVYVEETVWLAAMTAPSYSLQRGKLRLDVGSATLPASETVRTRAKRTPSPLPWEVRSATELDVMTTEMLARVALAAGMRLPRARRLSHER-----LLTMIEPLLDEAVRRDVRINRAVKADDFEEAATLHAGASRRSAVLGQLRQAVSEERYGAAAELAVDLAIETSRRADITQDEGAYSRFLDQDDWY 438
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7S1U145_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U145_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.750e-27
Identity = 79/217 (36.41%), Postives = 115/217 (53.00%), Query Frame = 3 
Query:    9 GQRTIIEVTTDEAVGVALALGRQIYVNEDIWESSRVR-PKFVMDGDKMRLDLNNLEGDDMF-ADRERVATPEQP---PAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYL 644
            G   ++E   DEA+ +A  LG Q+    ++++ + V       DG  + + +N  +  +   AD +    P +    PAW++K      ++++ EKR  L  SG   PRR     +      L+  +LPL+DE VRRDV L +A RAGD  +  EL   +SER  V  QL+ A+ D D  LA  L A+L++L+ CR D TQD GSY   LDAD WYL
Sbjct:  178 GSTRLVECYADEAIALAQGLGLQLTCETELFDGACVPVASATFDGKGVAITVNEAKLPEASEADGKPNLPPHKASLHPAWEVKHADDYFKLTLAEKRALLARSGADVPRRGRGEAA------LDSALLPLLDENVRRDVQLMKALRAGDMERVSELSQNRSERGSVKMQLESAVADEDYALAAELQAKLDVLDRCRADITQDEGSYDPYLDADPWYL 388
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7S2CV32_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CV32_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.900e-25
Identity = 77/223 (34.53%), Postives = 117/223 (52.47%), Query Frame = 3 
Query:   12 QRTIIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVMDGDKMRLDLNNLE-----GDDMFA------DRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLK 647
            + T+ E   DEA+GVA+A G  + V +++WE +R+ P++ M   +MR+++N L      G +  A       R  V+    P  W++ +   LTR+SVE+K  ++ A+G R PR R  S     D  L  L+ PL+DE VRR +++  A   GD A    L    S R  + E L++A+ +     A  L   L    + RMD TQD GSY + LD D+WY +
Sbjct:   81 ETTLCECAPDEALGVAMACGGGVLVEKEVWEQARLPPQYNMQRGRMRIEVNPLVSGQGGGAEAVAAAREAEQRTEVSGRGVPLPWELTTLEELTRLSVEDKALSILAAGGRLPRARLAS-----DEALTTLMAPLLDEDVRRQLMMREALVDGDMASLASLQGAISTRGQLLEALRLAVAEERYAEAAELSLELSTQTARRMDITQDEGSYDRYLDQDDWYAR 298
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A0G4GJY9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GJY9_VITBC)

HSP 1 Score: 108 bits (270), Expect = 1.140e-23
Identity = 77/222 (34.68%), Postives = 119/222 (53.60%), Query Frame = 3 
Query:    6 GGQRTIIEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKF-VMDGD-KMRLD----LNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASG--VRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLK 647
            GG+  + + + DEA+G+A  L + I+V   +W+   ++ +F ++DG  K+ +D      +L  +D+  D E +       A +++S      M   +KR  + AS    R PRR     SE+    +ED++L LMDEAVRR V++ RA   GDF  A  L A+KS+R  + E +Q A    D + A  L  RLE+L   + D T + GSY + LD DEWY +
Sbjct:  247 GGKEVVAQASRDEAIGIATVLRQPIHVQRSLWDKLALKAQFKLLDGALKISIDPALAAGSLAPEDL--DEEGIIDRLGKKAVEVRSVDEFEGMDDGDKRRCILASNPLARLPRRG----SEESQSKVEDMLLNLMDEAVRRQVMIKRASERGDFQLAARLVADKSDRQQIKELMQEAADAGDYKTAAELKERLEVLTMAKWDVTAEEGSYSRFLDQDEWYAR 462
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7R9U4Z2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4Z2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.920e-23
Identity = 69/214 (32.24%), Postives = 111/214 (51.87%), Query Frame = 3 
Query:    9 GQRTIIEVTTDEAVGVALALGRQIYVNEDIWE--SSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYL 644
            G   ++E   +EA+  A  L   + V+ +++   S+++R   V    ++R+D    E  +  + +   A P   PAW++++      +   +K     ASG+ PPRR    E+      L++L+LP +DE VRRDV +  A R GD  +   L  E+S R  +  +L+ A+ D D   A  L  +L+IL+  R D +QD GSY + LDAD WYL
Sbjct:   20 GAAKLVETFAEEAIAAATELQVPLTVDAELFAAASAKIRSFEVTSRGRLRIDTEAPEVPERKSAKAAAAVP---PAWELRTAEDWLALDFRQKVEMALASGLTPPRRARGEEA------LDELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWYL 224
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A8J6C8W8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8W8_DIALT)

HSP 1 Score: 104 bits (259), Expect = 5.430e-22
Identity = 79/224 (35.27%), Postives = 105/224 (46.88%), Query Frame = 3 
Query:   24 IEVTTDEAVGVALALGRQIYVNEDIWESSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRG--------TLRASGVRP-PRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYLKDRRSSLG 668
            +  +TDE +GVA+A G  I V  D+W +  +  +F +D  +MR+ +            E  A P QP     +    L ++S  + R          L ASGVR  PR R  +        L  L LPL+D AVR  +LLA A    DF +A  L   KS R +VAE L  A+   D   A  L  RL+ L    MD TQ+ GSY   LD DEWY + +R   G
Sbjct:  209 VYASTDEMIGVAMAAGVPIEVERDVWMAGALAARFALDDGRMRVAV------------EPPAAPPQPSRASAEPPAPLWQLSAAQFRALKPPALARALLASGVRALPRPREATRER-----LAALALPLLDAAVRNQLLLADAIARDDFVEAQRLVGAKSTRQLVAEALDGALAAEDYARAEQLRVRLDALTDALMDPTQEAGSYDPYLDQDEWYAEAQRRIYG 415
[Close]
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Match: A0A7R9U507_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U507_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.100e-21
Identity = 69/214 (32.24%), Postives = 111/214 (51.87%), Query Frame = 3 
Query:    9 GQRTIIEVTTDEAVGVALALGRQIYVNEDIWE--SSRVRPKFVMDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEKRGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWRAGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCRMDATQDVGSYQKDLDADEWYL 644
            G   ++E   +EA+  A  L   + V+ +++   S+++R   V    ++R+D    E  +  + +   A P   PAW++++      +   +K     ASG+ PPRR    E+      L++L+LP +DE VRRDV +  A R GD  +   L  E+S R  +  +L+ A+ D D   A  L  +L+IL+  R D +QD GSY + LDAD WYL
Sbjct:  180 GAAKLVETFAEEAIAAATELQVPLTVDAELFAAASAKIRSFEVTSRGRLRIDTEAPEVPERKSAKAAAAVP---PAWELRTAEDWLALDFRQKVEMALASGLTPPRRARGEEA------LDELLLPNLDEDVRRDVQIMEAMRQGDMQEVARLTEERSRRGQLRNELRAAVADEDYSRAAELQRQLKILDRGRADVSQDEGSYDRFLDADPWYL 384
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1053.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1S6_ECTSI1.070e-11078.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZMI0_9STRA1.200e-3940.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RI23_9STRA3.530e-2837.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0L3C8_9EUKA4.640e-2837.68Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1U145_9STRA1.750e-2736.41Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2CV32_9EUKA1.900e-2534.53Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0G4GJY9_VITBC1.140e-2334.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7R9U4Z2_9STRA7.920e-2332.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J6C8W8_DIALT5.430e-2235.27Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7R9U507_9STRA1.100e-2132.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1053contigS-latissima_F_contig1053:92264..100029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2850.Phatr48317
Hectar predicted targeting categoryother localisation
EggNOG OGs2D80I@1,2T871@2759,2XF1A@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size711
Cds size543
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.846691-UTR-S-latissima_F_contig1053:92263..923001622815428.846691-UTR-S-latissima_F_contig1053:92263..92300Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 92264..92300 -
1693924878.047571-UTR-S-latissima_F_contig1053:92263..923001693924878.047571-UTR-S-latissima_F_contig1053:92263..92300Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 92264..92300 -
1622815428.900986-UTR-S-latissima_F_contig1053:97241..972591622815428.900986-UTR-S-latissima_F_contig1053:97241..97259Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 97242..97259 -
1693924878.1006122-UTR-S-latissima_F_contig1053:97241..972591693924878.1006122-UTR-S-latissima_F_contig1053:97241..97259Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 97242..97259 -
1622815428.9148161-UTR-S-latissima_F_contig1053:99916..1000291622815428.9148161-UTR-S-latissima_F_contig1053:99916..100029Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 99917..100029 -
1693924878.113144-UTR-S-latissima_F_contig1053:99916..1000291693924878.113144-UTR-S-latissima_F_contig1053:99916..100029Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1053 99917..100029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.858841-CDS-S-latissima_F_contig1053:92300..924651622815428.858841-CDS-S-latissima_F_contig1053:92300..92465Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 92301..92465 -
1693924878.0645525-CDS-S-latissima_F_contig1053:92300..924651693924878.0645525-CDS-S-latissima_F_contig1053:92300..92465Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 92301..92465 -
1622815428.8693113-CDS-S-latissima_F_contig1053:94465..945791622815428.8693113-CDS-S-latissima_F_contig1053:94465..94579Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 94466..94579 -
1693924878.0747385-CDS-S-latissima_F_contig1053:94465..945791693924878.0747385-CDS-S-latissima_F_contig1053:94465..94579Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 94466..94579 -
1622815428.8783338-CDS-S-latissima_F_contig1053:94872..950261622815428.8783338-CDS-S-latissima_F_contig1053:94872..95026Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 94873..95026 -
1693924878.0828414-CDS-S-latissima_F_contig1053:94872..950261693924878.0828414-CDS-S-latissima_F_contig1053:94872..95026Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 94873..95026 -
1622815428.8885314-CDS-S-latissima_F_contig1053:97131..972411622815428.8885314-CDS-S-latissima_F_contig1053:97131..97241Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 97132..97241 -
1693924878.0913544-CDS-S-latissima_F_contig1053:97131..972411693924878.0913544-CDS-S-latissima_F_contig1053:97131..97241Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1053 97132..97241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1053.459.1prot_S-latissima_F_contig1053.459.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1053 92301..97241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1053.459.1

>prot_S-latissima_F_contig1053.459.1 ID=prot_S-latissima_F_contig1053.459.1|Name=mRNA_S-latissima_F_contig1053.459.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=181bp
MDGDKMRLDLNNLEGDDMFADRERVATPEQPPAWKIKSRGALTRMSVEEK
RGTLRASGVRPPRRRTLSESEDKDRDLEDLVLPLMDEAVRRDVLLARAWR
AGDFAKAGELCAEKSERHIVAEQLQMAMKDSDEELAHILMARLEILESCR
MDATQDVGSYQKDLDADEWYLKDRRSSLGL*
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mRNA from alignment at S-latissima_F_contig1053:92264..100029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1053.459.1 ID=mRNA_S-latissima_F_contig1053.459.1|Name=mRNA_S-latissima_F_contig1053.459.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=7766bp|location=Sequence derived from alignment at S-latissima_F_contig1053:92264..100029- (Saccharina latissima SLPER63f female)
CGGTGGGAGGGCAAAGGACCATCATCGAGGTGACGACAGATGAGGCTGTA
GGGGTGGCGCTCGCGCTGGGGCGGCAGATCTACGTCAACGAGGACATCTG
GGAGAGCTCCCGGGTGAGAGGGGCCTAGCTGACTATTAGCATCGACCATC
CACATGGAAGCAATAACACCCGCCGGGGAAGTTTGTCGACCCGTGCTGCG
GCAAGGGTACATGGCGCCTCCATTGCCCGGGGCTACTTCACTCACTTGAG
GGGACCGTAACACGAGTTTTTGAGACTGAATTAAAAGCTACGTATGTGCC
CGATGCATGCACAATCCCTTTGGATTAGGTGCTTAACGAATAGTGTAAAC
AACAAAAAAACACATTTACACCTCGGATAGATCACGATCTATCTATCTAT
CTATCTACGGCAGATCATCTAGCATCCTCACCTCTTGCCTTTGTGAGAGG
CTGTGCAGGATCTGCGTGGCGTAAGCACAGATCCAACCCGGGTGAACACG
TGCTATATTTTATATACAGTAGACCGTATAGATTACACCCCCCCCCCCCT
CCGGCAACATGAGCTATGTATAGATCATACAGATCATGCAAAAGAGGGAT
CTGTCTTCCCTGAAAGATCTAGATCATCAAGTGGGAATCGATGATCTGTT
GATGATCTGTTGATGATCTGTCTGAGGTGTGGAAGGGTGTGAACTCCTCG
AGAGGCGTTCTTTTACCTAGGGTACGTTGCAGCGGCGGCGGTGGTGGCGG
CCGTGTTTCTCGGGACCGTGCGCGCACTACTTGCTGTGCCGTTTTTTTTT
TGTCTGGTCTGGTGTTCGAGAGGCGGAGCGTGTATACGTGTCGGCGGCGT
ATTGTGGACGGGGGCATCTGTTTATGCTTGTGGCGATCGAGCAAGGCAGC
CAGCTGCGGTCGTCGTCGTCGTCGCCGTCGTACCCGTCAACGTTCGTAGG
CGTTTTTTTATTGGTGTTGGCGTTACCCGGAGGGGAAGGGGGGGGGAGGG
GCGGAAGCAGTAGAGGGAAACACTCTTGACTTCACCCCGCGCGGTGACTA
CGTAGTAATAGTTGCTTTGAGGTTTTAGTTGCTTGGTTGATCTCGAGCGG
GTGAGCCTATTTACGGCGAGCCCCCCCCCCCCCCTCCTCACCCCCCCCTC
TACCCTCCCCCTATATGCCTGGTTGGTGAAAACCGAACGTGCGCCGTCCC
GGCATTATAGGGGGATGCGAGGGTCTATGGCACACGATTACGGACGTGCC
GACAGAGTCACCCCCACCACCCTCCTCACCCCCCCCATCCTGCTCTCCCC
CCTATAAACTCATTGAAGCTGTCATCCACATGCAAGTCCGCCTCGCAAGT
GGTTCTTAGTAGGATGCAGCTCACCCTTCATGCGACTCGCCGAACACCTC
ACGTCTCGCTTCGCGCTTGGTGCAAGCAAGCCAATGTCTACCTGGTGGTG
TGAAAAAAACCCGACATGCTCCAGTCCCGCATTGCAGGGATGCGAAGGGT
CTATGGTCATACGACTACGACATGCAGATATCGGGCAACCTATTTTTCCC
CTCACCCGCTCCTCCTAGCCTGCCCCTACCCCCCCCCCCCCCCCCCCCCT
TTAAATATATGATAATTTATAGGTGGGTGGCGTCGGTTGCAACGACGCTG
TAAAACAGCCACTCGCTGCGTGAGCATAGACAACCAGGGTGCCGTTTTTT
TTTTTTTTTTTTGGCGGCGTCGGTTGGCAACGACGCGGTAAAACACGCCA
CTCGCGCGGAGCTAGACAACCAGGGTGCCGTTTTTTTTTTTTTTTTTTTT
TGGCGGTCACCAAAGCTGGCGGTCGAGTAGATCATTTGTGCGGGCTGGAG
AACCTTTGCTCCGCACAAGGGGAATGGTCGTATCACGTAGTGTTAATATG
GTAAGGCATCCGCGAGGCAGTTACATAGTAAAACCCATTGCTGTCTCCGG
AAGTGGCCACACCAGAAATTAAATTAACTCATTGAAGCTGTCGTCCATAT
GCAAGTCCGCCTCAGAGGCGGTTCTTAGCAGGATGCAGCTCACCCTCCAT
GCGACTCGCCCAATACCTCACGGCGCTTCGCGCTTGGTGCAAGCAATGTC
TGCCTGGTTGGTGAAAACCCAACGTGCTCCGTCCCGGCATTGTAGGGATG
CGAGGGTCTATGGTCATATGACTACGGCCGTGCACGACATGAGTACACCC
CCCCCCCGACCATCCTGCCTGGTTGGTGAAAACCCAACGTGCTCCGTCCC
GGCATTGTAGGGAGGCGAGGGTCTATGACCATACGATCACGGCCGTGTAC
GACATGAGTATACCCCCCCCCCCCGACTACGGTTAACTCATTGAAGCTGT
CGTCCGTATACAAGTCCGCCTCAGAGGCGGTTCTTAGCAGGATGCAGCTC
ACCCTCCATGCGACTCGCCCAATACCTCACGGCGCTTCGCGCTTGGTGCA
AGCAATGTCTACCTGGTTGGTGAAAACCCAACGTGCTCCGTCCCAGCATT
GTAGAGATGTGAGGGTCTAGGACCATGATACTACGGCCATGCATGAAAAT
GAAGTACACCCCCTCCCTACCCCCCCCGACCATCCTGCCTGGTTGGCGAA
AACCCAACGTGCTCCGTCCCGGCATTGTAGGGATGCGAGGGTCTATGGCC
ATACGATCACGGCCATGTACGACATGAGCACACACCTCCCCTCGACCACC
CCTCCGGTGAAACCAACAAGAAAGCGTACGGTTTGTGTTTTTGTGTTTTG
TCTGGTTGTTGTCTCGTCAGGTTCGGCCCAAGTTTGTCATGGACGGCGAC
AAGATGCGTCTGGACTTGAACAACTTGGAAGGGGACGATATGTTCGCGGA
CAGAGAGAGAGTGGCGACCCCTGAGCAGCCCCCCGCTTGGAAAATCAAGT
GAGGAGAGAGGGGAAGGGGAGGGGATGGGAAGGGGAGGGGGAGGGTAGGG
GAGGAGGAGGAAGGAAGGGGGATTTGCATAGGGGTGTTGAGTGCTGCTCA
CGGCAGACGTACGGACGAATCGATGAAGGGTGTTGTCCCTAGTGGGTAAA
GGAAAGGCTTATCATGCGTTCGTCCTTTTGCCTGGTGGGTTCGAGTCTGT
TGGGGTTGTGTTGTGGTTGTGTTGTGTTGTGTTGCATTGTGTTGGTGTTG
GTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTG
TTGTGTTGGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGCTGTACTGTAC
TGTGCTGTGTTGTGCTTTGATTCCCCACCATAGAAAGCCCCTCTGTGGTG
TCCTCCCACCCACGATGCAGGCTTCATGAGACTGGGGCTGAAAAGGCCAA
AACAAAATGCCAAAAAATCACGGAAGTCCTGTACAGTCTTGTTCATCTCG
TCCACCGAGATCCGGAGCCCGCCGGCAGATAGTACTTGAATACTCCCCGA
GACAGTTAATTGCGAGCTCGTTCGATCCACACAGCAGTCGGCACGCGGCC
TGATCGCTTACGCGGCTTAAACTGTGCCGACAGTCGTTGTAGTCGCGCCG
CACATCGCAGCTGGTGAAGCGGCTCCGCTAACCAACTGTTGTCTGGGATT
AGTTTTTTTTTTTTTTTGTTGCTGCCTGCGACACATCCGCTTTTTGTTTT
TTCCTCGTTGCTTTGTATTTGGGGCGAGAAATGGTCGAGGGCTTCCTGCG
AGTTTTTTTTTTTTTTTCTTGTTTCTTGTTTCTCGTTTTTTTGTTATTGT
CTGTGGGGCAAAAACGAGTCGCGAGGGCTGCTTGCGATACACATGTCGCT
TTTTTTTGTTTCCCCGTTTTTTGTTGTTGTTTTCTGTGGGGCGAAAAAAT
GGTCGCGAAGACTCTCAGATAGTTATTATTAATAATAGTAAATATTTCGT
TATTTTTCCGGTTTTTGTTTTCCTCGTTTTTTTTTTTAATGTTTTATTCT
GTGGGGGCGAAAAACGATCGAGCTCATACAAGGCGTTAAACTTTTTTTTT
CCGCCTGATTTGTGGACACCAGGTCCGCTTCCCCTAGATAGTACCGCCTT
ATTACCCACATGTTCAAGGTCACCCAAGAGGTTCCTCACGCCGTTTCGTG
AAGACCCGAGACGACAACCCACCTCTGTGTGCCCTCCACACCAAACACAC
ATTTGAGAAAATTTGCCAGGGGCTCCGGCCCACATTTGCGTCGACGCCAA
TATGGGGCGGAGCCCCTGGCAGGTTTTCTCTAGTGTGGATTTGGCGTGGA
GGACAGGACACCGAAGAGGTTGGTTGGTGTCTGGGGTCTTCGTGGAACGG
AGTGCCAGACCCTCTTGGGTGACCTTGAACTTGTGTGTATTGAGGCTGTA
CTATCTAGGGGAAGGGGACCCGGTATCCACCCCCCTCCTTTTTGAGACGT
TTGCGTAAGTGATCCGTACCAAGCACGCCATCGATTTCTCTCCAGTCTTT
TATCGTCTCTCTAAGTAACGTGGACTCCTTCAAAGGCCAACTTAAACCTC
TGACCATGACTTCGGGACAGATTTTTTGCCTCATACACCAGGCAGTCATT
CAGGAAGAATGAAACCGTACCCACACCATCTCTAGACGAGCTTTTGGCTG
TTGTAGCATAGCCGAAGCTACGTTCCCGTTTGCCACGAGGCACCCATCCT
GTTGATTGCGCGCCGTACCGTACCTCACCCCATGCTCGAAAAGAAAATTG
ACGAACAAGCAACCAAACTGTTCATTTTTTCAGGACTGGGTTGATTGACC
CCAGAGGTGTTGGAGCGACAACGCTTAGGTCCGTACTGCACTAGTATGTA
GAAGTACCACAAGCATGCGTTGACCCCCGACCAGTTGAAAGCAGGGGGAT
ACTCTTCCTCCTCCTCGACTGTGCGCCTGAGCACTGTGCCTGAGCACGGC
AAGAATCTCATAGTGGACCGTATGGACCAGTTTTGTTGTATCGTTTTCAT
GCCTGTAAGCACCGCATGCTTTTTTTTTTTTTTGTCTGTGGGGCGACTAA
AAGGTCGAGGGGAGCGCTGACGCGCATGTCTGTGGAGGAAAAGCGGGGCA
CCCTGAGGGCTAGCGGGGTCAGGCCTCCGAGGCGGCGCACTTTATCCGAG
TCGGAGGACAAAGACAGAGACCTGGAAGACCTCGTTCTTCCTCTCATGGA
CGAAGCGGTGAGGACTGAGGAACGAGGGGTGGGGGCGGGGGCGGGGGGAG
GGGTGGTGGGGGGGGTGGGATATTGTGGGGGTGGGGGGAGTGGAGGGTGG
GGGTGGCGTTGGGGGGTGGGTCCCTCTCCCCCCCCCCCCCCGTTCCCGAC
CACGTTCCCGTCTATTCATAGGGTTCCTCAAACGCCCGCCTTTCTTTCAT
CTCCTGCTTTCAACCGTCGGCGCTGTGTCTCATGTCGCCGCTACCCGTAT
TGTTTCTGGGAAACCTTGTTGCGCGTCGTGAAACGTTTGCGCGAGAGCAG
GTGCGGCGGGACGTGCTGCTGGCGAGGGCCTGGCGAGCGGGGGACTTCGC
CAAGGCTGGCGAGCTTTGCGCCGAGAAGAGCGAGCGGCACATTGTCGCGG
AGCAGCTGCAGATGGTGCGTTATAACCCGTTTGGGCACCTTTAGACATGC
GGTTTATGAGGGCTGTGCTTGGGTTGTTGGGACGGACGCAAAACTTGGAT
TTAGACTCGCTATTTTGGGTAGGGGTGCCACCTGAAAAAAAATCTGCAGC
TCCGCACGCGAGGGTCTCTATATATAATCGAATAATCGAAGTATGTCTGA
TCCCCCCCACCCCCCAAAAGCGCAAAACGACATTCAACCCCTTAAGAACC
GATCCCACGAATTTTCGGGGACAAAATACTTGGCAATTTTGTGGGATAAG
TTTTGCAGTTCTGAATGGGTTAAGGAAAAAATGCACACATTAGGTATGTG
ACGAGAAATATTGTGAAAATATTACGATGGTGGTGGGTAGGTACTGTGCT
TCCTCAGTTCCCAAATCGGTCATAAATATTTTGACCAAAAAAATATATCA
CCGAGACCACTAGCGTGGGGTGCGTCATGAGTGTGCGTGCGGTTGCAGTT
GCGTGTGCGTGAGCGCGTGCGTGGGTTTATATCCATTAATCGTACTTGGT
ACCTTCTTATTTTATGAGCATACACTACAGTAGCGTACTTTTTGTTTGTT
TGTTTGTTTCGCGTTAAAAGTATGTGCCTGGTATACACGTATATACGTAT
GATAGCACCCGTCACCCGTGGATGTTTTTAGGAGCGCAACAGGCATGCAA
ATATCTGGGCAAACGACAAAGTACTCACAATAGAAACAATGTACTGTACT
ACTTAAGTAATATATGTCACTATTTTATTCGCGTACTACTTTTATCTTGT
ATTACCGTTGGGCAATATCGCGTACTACCGTTGGACCCTGCATATGCCCT
AGTACGAGTACAGTGCCGTTTTTTGTGCAGTCGCTCAACCGTGCCGTGGA
CAAGCGCTGAGTATACCCGATACACTACACGGTACACGGTGTTGCAACTG
CGCCCTACTATCCGCACCGTAGCTCTACAAATACCGCCGCCGTACTGTCT
TATTTCCCGGGATTTTTATGCGCCAGGAACGTTTCGAAACCTCACCGGTC
GGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTC
GGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGGTC
GGGTCGGGTCGGGTCGGGTCGGGTCGGGTCGGATCGGATCGGCTCACCCG
TACCCGACCCGACTTGACGCGCGAAGTTTGACCCTACCCGTGAACAGCCC
TGCCTTAATCCTTCCTGAGGTATATAATATGGCCTGTATCCAACGCCGTA
GTTGTTAGAAATGACCCTCATACCGTTGCTGCCCATGCCCACAACCGGAT
ACATTGGTCATGCTTGGAAAGTTACGCAGTGTAATGCTCAGCCTGGTTCT
TGCTTCCCGACCCAGAATATTATGAAACACCGATAACATCAGCCGCCGAT
ATGAAATTGATGTATGTGCAAGCGATTCAGCCGGTCGCCCGCAAAACAAA
CACTGCCATACGCCGATGTAGCTGAGCAAACTCCCCGGGAAAGGATGTGG
GTCAACAGGAGACTTAAAATGGAGATAACCCAGTTAAGCTCCGGGAAATT
GCCCAGGGCCAATCAGAGACTTTGAAGGAGAATATCCAGTTACGAATAAC
CTCCGGTAAAGTATCCAGGGTCAGCAGGAGACTCGTACGTACGTGCAAAG
GAGATAATCTGCCAATAACCTGTGTGCTGAACCTACGTTCGTGTTTTTGT
TGCGACAGTTCATTCGTCGCCTTTTATTGTTTTTTCTTTTTCTTTTCTTA
CGCGTTGTGCTTTTGCGACGTGTCCTACCCCCCAAAAAACCTCAACTCTT
CATCGCCCCCAAAACCATCTTCGATATATTTTGGGCACACGTCAAGCTAA
AAGCTAACCGCCAGCATGTCTTGCCGCACGCACCCCTCTCTTTCTCTCTC
TTTTTTTTTTTTTTTTTTTTGTTGTTGTCATTTTGCTTTTGTACGATGCG
GGTGGTGGAGTTAGGCCATGAAAGACAGCGACGAGGAGCTCGCCCATATC
CTCATGGCGCGGCTCGAGATTCTGGAGAGCTGCAGGATGGACGCGACTCA
GGACGTGGGTTCCTACCAGAAAGATCTGGACGCCGATGAGTGGTACCTGA
AGGACCGCCGATCGTCGCTAGGGTTATAGGGGGGGAGCCTTGTGGCATCG
ACAGCAGCTGCGGTAC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1053:92264..100029-

>mRNA_S-latissima_F_contig1053.459.1 ID=mRNA_S-latissima_F_contig1053.459.1|Name=mRNA_S-latissima_F_contig1053.459.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1086bp|location=Sequence derived from alignment at S-latissima_F_contig1053:92264..100029- (Saccharina latissima SLPER63f female)
ATGGACGGCGACAAGATGCGTCTGGACTTGAACAACTTGGAAGGGGACGA
TATGTTCGCGGACAGAGAGAGAGTGGCGACCCCTGAGCAGCCCCCCGCTT
GGAAAATCAAATGGACGGCGACAAGATGCGTCTGGACTTGAACAACTTGG
AAGGGGACGATATGTTCGCGGACAGAGAGAGAGTGGCGACCCCTGAGCAG
CCCCCCGCTTGGAAAATCAAGTCGAGGGGAGCGCTGACGCGCATGTCTGT
GGAGGAAAAGCGGGGCACCCTGAGGGCTAGCGGGGTCAGGCCTCCGAGGC
GGCGCACTTTATCCGAGTCGGAGGACAAAGACAGAGACCTGGAAGACCTC
GTTCTTCCTCTCATGGACGAAGCGGTCGAGGGGAGCGCTGACGCGCATGT
CTGTGGAGGAAAAGCGGGGCACCCTGAGGGCTAGCGGGGTCAGGCCTCCG
AGGCGGCGCACTTTATCCGAGTCGGAGGACAAAGACAGAGACCTGGAAGA
CCTCGTTCTTCCTCTCATGGACGAAGCGGTGCGGCGGGACGTGCTGCTGG
CGAGGGCCTGGCGAGCGGGGGACTTCGCCAAGGCTGGCGAGCTTTGCGCC
GAGAAGAGCGAGCGGCACATTGTCGCGGAGCAGCTGCAGATGGTGCGGCG
GGACGTGCTGCTGGCGAGGGCCTGGCGAGCGGGGGACTTCGCCAAGGCTG
GCGAGCTTTGCGCCGAGAAGAGCGAGCGGCACATTGTCGCGGAGCAGCTG
CAGATGGCCATGAAAGACAGCGACGAGGAGCTCGCCCATATCCTCATGGC
GCGGCTCGAGATTCTGGAGAGCTGCAGGATGGACGCGACTCAGGACGTGG
GTTCCTACCAGAAAGATCTGGACGCCGATGAGTGGTACCTGAAGGACCGC
CGATCGTCGCTAGGGTTATAGGCCATGAAAGACAGCGACGAGGAGCTCGC
CCATATCCTCATGGCGCGGCTCGAGATTCTGGAGAGCTGCAGGATGGACG
CGACTCAGGACGTGGGTTCCTACCAGAAAGATCTGGACGCCGATGAGTGG
TACCTGAAGGACCGCCGATCGTCGCTAGGGTTATAG
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