mRNA_S-latissima_F_contig1044.399.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1044.399.1
Unique NamemRNA_S-latissima_F_contig1044.399.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1044.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1044contigS-latissima_F_contig1044:152512..153127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1044.399.1prot_S-latissima_F_contig1044.399.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1044 152605..152949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.8154018-UTR-S-latissima_F_contig1044:152511..1526041622815419.8154018-UTR-S-latissima_F_contig1044:152511..152604Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1044 152512..152604 +
1693924869.9829438-UTR-S-latissima_F_contig1044:152511..1526041693924869.9829438-UTR-S-latissima_F_contig1044:152511..152604Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1044 152512..152604 +
1622815419.933842-UTR-S-latissima_F_contig1044:152949..1531271622815419.933842-UTR-S-latissima_F_contig1044:152949..153127Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1044 152950..153127 +
1693924870.0022793-UTR-S-latissima_F_contig1044:152949..1531271693924870.0022793-UTR-S-latissima_F_contig1044:152949..153127Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1044 152950..153127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815419.824585-CDS-S-latissima_F_contig1044:152604..1529491622815419.824585-CDS-S-latissima_F_contig1044:152604..152949Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1044 152605..152949 +
1693924869.9933052-CDS-S-latissima_F_contig1044:152604..1529491693924869.9933052-CDS-S-latissima_F_contig1044:152604..152949Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1044 152605..152949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1044.399.1

>prot_S-latissima_F_contig1044.399.1 ID=prot_S-latissima_F_contig1044.399.1|Name=mRNA_S-latissima_F_contig1044.399.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=115bp
MGMQTNPTRPSELQLLTEHLDTVTFLLEQGADPNTPVSIQAPWPGSGTIT
TSLGERALHIAARGGNVEIVRSLLEAVANPATSKRAHYCSARSGRKRPLG
FYRHGALQSARRPE*
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mRNA from alignment at S-latissima_F_contig1044:152512..153127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1044.399.1 ID=mRNA_S-latissima_F_contig1044.399.1|Name=mRNA_S-latissima_F_contig1044.399.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=616bp|location=Sequence derived from alignment at S-latissima_F_contig1044:152512..153127+ (Saccharina latissima SLPER63f female)
CATGAGTACAAGTATTGGCCGCCCTATTAACTGCCGTCTGGAATGGAAAC
GTAGATGCAGCAAAAGCCGTTCTTGAGGCTGGAGCAGACGTGAATGGGCA
TGCAGACCAACCCTACGCGCCCATCGGAGCTGCAGCTATTAACCGAGCAT
CTCGACACGGTAACATTTTTGCTGGAGCAAGGCGCAGACCCAAACACACC
GGTCAGTATCCAGGCGCCATGGCCAGGATCGGGCACGATAACTACCAGTC
TTGGTGAACGGGCCCTGCATATAGCAGCCAGGGGCGGGAACGTTGAGATC
GTGCGGTCGCTGCTGGAGGCGGTCGCTAACCCGGCCACAAGCAAACGGGC
TCACTACTGTTCTGCACGGAGTGGCCGGAAACGGCCACTTGGATTTTATC
GACATGGTGCACTCCAGAGCGCCCGCCGCCCTGAATAGCTACGCTTCCGA
AAGCGGACCGCCGCTCTTCGTTGCGACCTTTGACGGCCACGACACCGTGG
TGTCCGAGCTGCTGTCGTTGGGAGCGATGCAGCGGTTCCCCCCCAACAGC
ATGTGTCCGCTCTTGGTAGCCGTAGACAAAGGCTTCGTTATTGTGGGGAG
GGCGCTGATCAACGGA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1044:152512..153127+

>mRNA_S-latissima_F_contig1044.399.1 ID=mRNA_S-latissima_F_contig1044.399.1|Name=mRNA_S-latissima_F_contig1044.399.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=690bp|location=Sequence derived from alignment at S-latissima_F_contig1044:152512..153127+ (Saccharina latissima SLPER63f female)
ATGGGCATGCAGACCAACCCTACGCGCCCATCGGAGCTGCAGCTATTAAC
CGAGCATCTCGACACGGTAACATTTTTGCTGGAGCAAGGCGCAGACCCAA
ACACACCGGTCAGTATCCAGGCGCCATGGCCAGGATCGGGCACGATAACT
ACCAGTCTTGGTGAACGGGCCCTGCATATAGCAGCCAGGGGCGGGAACGT
TGAGATCGTGCGGTCGCTGCTGGAGGCGGTCGCTAACCCGGCCACAAGCA
AACGGGCTCACTACTGTTCTGCACGGAGTGGCCGGAAACGGCCACTTGGA
TTTTATCGACATGGTGCACTCCAGAGCGCCCGCCGCCCTGAATAGATGGG
CATGCAGACCAACCCTACGCGCCCATCGGAGCTGCAGCTATTAACCGAGC
ATCTCGACACGGTAACATTTTTGCTGGAGCAAGGCGCAGACCCAAACACA
CCGGTCAGTATCCAGGCGCCATGGCCAGGATCGGGCACGATAACTACCAG
TCTTGGTGAACGGGCCCTGCATATAGCAGCCAGGGGCGGGAACGTTGAGA
TCGTGCGGTCGCTGCTGGAGGCGGTCGCTAACCCGGCCACAAGCAAACGG
GCTCACTACTGTTCTGCACGGAGTGGCCGGAAACGGCCACTTGGATTTTA
TCGACATGGTGCACTCCAGAGCGCCCGCCGCCCTGAATAG
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