mRNA_S-latissima_F_contig1040.370.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1040.370.1
Unique NamemRNA_S-latissima_F_contig1040.370.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1040.370.1 vs. uniprot
Match: D8LG04_ECTSI (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG04_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 7.750e-57
Identity = 93/117 (79.49%), Postives = 105/117 (89.74%), Query Frame = 3 
Query:   48 PKADPVGTKALLASLESVVMDLNDMENMIENFEDSTAEPFFSKVNEYIVNLKEVEKRSPTCHLQVPREALERLDDDVEQNPELFAQELLTRCRDEFGQLNARVLGIKTVRQTVMDGW 398
            P+ DP GTKALL SLESVVMDLNDMENMIENFE+S AE FFSK+NEYI NLK+VE+++P C L VPREALER+DDDV+QNPELFAQELL RC+DE GQL+ARVLGIK VRQTVM+GW
Sbjct:    6 PQPDP-GTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLHVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGW 121
[Close]
BLAST of mRNA_S-latissima_F_contig1040.370.1 vs. uniprot
Match: A0A6H5JGA7_9PHAE (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.230e-41
Identity = 82/123 (66.67%), Postives = 92/123 (74.80%), Query Frame = 3 
Query:   48 PKADPVGTKALLASLESVVMDLNDMENMIENFEDSTAEPFFSKVNEYIVNLKEVEKRSPTCHLQVPREALERLDDDVEQNPELFAQELL-----TRCRDEFGQLNARVLGIK--TVRQTVMDG 395
            P+ DP GTKALL SLESVVMDLNDMENMIENFE+S AE FFSK+NEYI NLK+VE+++P C LQVPREALER+DDDV+QNPE+FAQELL     T C D     NA  L  K  T R T   G
Sbjct:    6 PQPDP-GTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLQVPREALERIDDDVDQNPEIFAQELLASQPCTLCADGEHHTNAVYLAFKLYTCRDTGTAG 127
[Close]
BLAST of mRNA_S-latissima_F_contig1040.370.1 vs. uniprot
Match: A0A835Z750_9STRA (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z750_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.530e-17
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 3 
Query:   99 VVMDLNDMENMIENFEDSTAEPFFSKVNEYIVNLKEVEKRSPTCHLQVPREALERLDDDVEQNPELFAQELLTRCRDEFGQLNARVLGIKTVRQTVMDGWNSGKG 413
            VV+ L+++EN IENF +   +P FS++N Y+  L+ +     TC   VP +ALERLD++   NPE+F+ ELL RCR EF  +  +  GI+ +R+ V D W  G G
Sbjct:    4 VVLTLDELENRIENFVEE--KPLFSQINAYVDKLQALSDARETCDADVPVQALERLDNNFNNNPEVFSLELLQRCRAEFDAVRNKAEGIRQLREGVAD-WRGGGG 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1040.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG04_ECTSI7.750e-5779.49Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JGA7_9PHAE2.230e-4166.67Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z750_9STRA1.530e-1742.86Mediator of RNA polymerase II transcription subuni... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1040contigS-latissima_F_contig1040:111407..120953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med10
Ec32 orthologEc-21_005090.1
Exons4
Model size473
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1040.370.1prot_S-latissima_F_contig1040.370.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1040 111445..120953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.6267765-UTR-S-latissima_F_contig1040:111406..1114441622815416.6267765-UTR-S-latissima_F_contig1040:111406..111444Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1040 111407..111444 +
1693924868.0024886-UTR-S-latissima_F_contig1040:111406..1114441693924868.0024886-UTR-S-latissima_F_contig1040:111406..111444Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1040 111407..111444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815416.6399844-CDS-S-latissima_F_contig1040:111444..1115841622815416.6399844-CDS-S-latissima_F_contig1040:111444..111584Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 111445..111584 +
1693924868.0129936-CDS-S-latissima_F_contig1040:111444..1115841693924868.0129936-CDS-S-latissima_F_contig1040:111444..111584Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 111445..111584 +
1622815416.6546514-CDS-S-latissima_F_contig1040:118331..1184121622815416.6546514-CDS-S-latissima_F_contig1040:118331..118412Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 118332..118412 +
1693924868.0220075-CDS-S-latissima_F_contig1040:118331..1184121693924868.0220075-CDS-S-latissima_F_contig1040:118331..118412Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 118332..118412 +
1622815416.6730545-CDS-S-latissima_F_contig1040:118632..1186921622815416.6730545-CDS-S-latissima_F_contig1040:118632..118692Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 118633..118692 +
1693924868.0337777-CDS-S-latissima_F_contig1040:118632..1186921693924868.0337777-CDS-S-latissima_F_contig1040:118632..118692Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 118633..118692 +
1622815416.6863854-CDS-S-latissima_F_contig1040:120799..1209531622815416.6863854-CDS-S-latissima_F_contig1040:120799..120953Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 120800..120953 +
1693924868.0421271-CDS-S-latissima_F_contig1040:120799..1209531693924868.0421271-CDS-S-latissima_F_contig1040:120799..120953Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1040 120800..120953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1040.370.1

>prot_S-latissima_F_contig1040.370.1 ID=prot_S-latissima_F_contig1040.370.1|Name=mRNA_S-latissima_F_contig1040.370.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=145bp
MATPKADPVGTKALLASLESVVMDLNDMENMIENFEDSTAEPFFSKVNEY
IVNLKEVEKRSPTCHLQVPREALERLDDDVEQNPELFAQELLTRCRDEFG
QLNARVLGIKTVRQTVMDGWNSGKGTADQTSAGGNEAGRGGGES*
back to top

mRNA from alignment at S-latissima_F_contig1040:111407..120953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1040.370.1 ID=mRNA_S-latissima_F_contig1040.370.1|Name=mRNA_S-latissima_F_contig1040.370.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=9547bp|location=Sequence derived from alignment at S-latissima_F_contig1040:111407..120953+ (Saccharina latissima SLPER63f female)
CCGAAAGCTGTCCTGCTTTGAGGTAGCACTTGCTCCCGATGGCTACCCCA
AAGGCAGACCCTGTAGGCACGAAGGCGTTGTTAGCAAGTCTAGAGAGCGT
GGTGATGGACCTCAATGACATGGAGAACATGATCGAGAACTTTGAGGACT
CCACAGCAGAGCCGTTCTTCTCCAAAGTGTGAGACACTGCTGCTCCTGCG
TTTATTTTTGGTTTGATTGCTGTATTGGTCGTTGGATCCCTACAGTAGTA
GCTACCCATGCCAAGCGTGATAGACGATAGACACCACGATCACCATAGGA
TAGGTTGCGTATGTGGTCGAAGTGCTTGGTTCGTCGAGTGGGTTCATTGA
CAGTTGATAGAGTAACGACCCCCAGACATCCCTCGAGGATCGATCAAGGT
TGAGGTTGGCTGTGCCCTTTTCCAAGCAAGCTTGGAGCAAGTGACACTTT
TGAAGCAACCCACCTGACGAACGAACATACCCTGCGGAACTACTCGTACT
CGCACTACGTACTCGTACGTAGTACTGCTGCTGTGTAATTGCGCCTTGCT
TGAGGAAGATGCAAAGCTCAAGACAAACTTTCAGAGTTGCAAGCGGCCAC
AGCAGCACGCCATCATCGCCGCAAGCAAGCCAAGCGAGCCGTTTCGACAT
TCATTCCTGGCACTGATTAGCATACACACGCGTGCATATATATGACTTGC
TGATAAGCGATTGCGATGGACTATGGACGCAAGAACAACTTGTGAACAGG
CCAACAGACCTCGGAGTGTTTACGTCGTATTAATAGTTCATACCACAGGT
GCTTTGTAGGTCTGTACGAAGATTGATCGTCAAAATACTTGATCAATGCT
ACTTCATGTGTACTTGTGCATCGCCGTGCCGGGGACGTGTGTGTGTGTGT
CTCGCCCCCGGCCAATGGAGACTTTGCGCTGCGGCCACGACATTGGCATA
TCATATCATAGCATACCTTGCGGGCAGGTAGTAGGTACATAAGTACAAAA
TACACACAGACAGGCGCCCTGACGACCGTACGCCGCGAGTACGTCCATCA
TGTTCTGAGTTCTGAGAAACACACCACATGCTGCGTCTTGTGATTGTCGA
ATTACCTCTGCGATCTTGTACTACTTACGAGTACTGCCTACCTGGTACGG
CCTACAGAGGTAGAAGTATTGATGTTGTACGTACACGTACAGCAGTGCAT
GTACGACGGAAATGTAAGGACCGTTAGGCTTTCATATGAATGTTCAAACG
ACCCTTATATTTCCGACCGTTTAAACGCTAGACGCTCCTTATATCTCCGC
CCGTTTTTAACTCTCTTAAGTATATTTGCGCCCACAGGTACCAGTAAGTA
GTGGCGTATACTGCAATCAAGATAATATGATAACACACACCCCTGTGGCG
GGACGAAATTCCGAGACTACTGTAATTTCTCCGAAACTAGGGAGGGCAAA
CAACCACAAAAAATGGCGATGTTGGGAAGATCTCGTCGAGATATTTCCAT
GGGAAGATGTCATCGAGATATTTCCATGCATAAGACCAAACGTTATAGTA
CCACTTTGTGGCTCTTTTTTCTTCCCGACTTTTATTTCGCCAACCAAAGA
TAAAGGCTGTGCAGCAGCAGTGCCTATGGCCAAAACAACATAGTACTCGT
ATGTATTCAAAATTTGGTACGTATCATTTTTGTATACGTACCCGGTGTAC
GTCATACGTACATATTATACGTATCGTTGTCGTAGATAGTGCAAGGCATG
TATTATCGTATATATTTGCGGAACAATAAAAGAGCCAACCAAGATAATGG
CGTATTGTGCCTGGCATCATCTCAGGGGTCAGATGATGGCGAGACACCCC
TTTTTGTTGGATTTTTCAATCTTTTGCAAGGCATGTATTATCGTATATAT
TTGCGGAACAATAAAAGAGCCAACCAAGATAATGGCGTATTGTGCCTGGC
ATCATCTCAGGGGTCAGATGATGGCGAGACACCCCTTTTTGTTGGATTTT
TCAATCTTGGGGAACATAGTGGCCAACTTTATGCTCCATACGAGGGGTAC
ACCCATTTTCTTTGGCACTATGTTGCTGATAAGATTATGAACGAGCCACA
AAGTGGTACCATAACCTTTGGTCTAAGCACATTTTTGCTCGGCGTATACA
ATAGGAGCTCCCCTCCCCTCCCCGTCGCCAAGCAAATAATAAATCAGCGT
AGAAAATCGTCCTTTCAATTGAGGGGGGTGGGCTAAATCTTGCGTGATAG
ACTACCATAAACCAGCGTTTAAAATCGCCCAACTAACAGAGGGGGTAGGC
TAAATCTTGCATGTTAAGCGGTATCATAGTCTCTTTGTACAGCCTTAAAT
CATGTGCATGGCAATTCAACGTTTACATAAAATACCACAGGTTACCAAAT
ATGTTAAGCATGGACGTGTGGACGTGTACTCGTACATAGCGACGTACGTA
TAATATAATAAAAAGAGCCAGCTGTGTACATATCATATGTACGGAGAGTC
TCCCCAACAAAAAGCAAGCTGCCCTTTCTGCTGTTTGCTGTTCTGTACAA
CATGTGTAACTGCTGTGGTGCTCTGTCATTACTACAGCAGTAGTACCTGT
GGCAAGATTTTAGACGGCCCAGGCCCAGGCATCGCCCCCAGTTCTTGTTG
TTCACACATACCTCTGCATACCTGGTAAATAAATCGCACACATACGGCCT
AAAAAACTGTGCCGTTCCGCCACGCCGCTCGCGCCGCATCTTCGGCAGTG
CTAATCTGCATCATGCTGCTTGCTCTCTCCTGACCCCCCCCCCCCAATTT
TGCTCCGTCTCGAAAGGGATGCGTGGTCAATGGTCAAATGACTAAGGCAA
GCAACAAATGAGTACGCCCCCCCCCCCCCCCGCCGTCCCGGCATTGTAGG
GATGCGAGGGTCTATGGTCATATGACTACGGCCGTGCACGACATGAGTAC
ACCCCCCCCCCCCCCGCGCCCAATTTTCTGGGGCGCGTCTTCAATTTCCT
TTTTTTCGTAGAACTCCTCCTTCTCCTCCTCCTCCCCCCATCGTCCGTGC
CCGTCCCTTTCTCCCGTACCGTCCATTCTGAACCACGTTGCGTTGCCGCC
TTCACGTGTACTTACGTACGTCATGGGGGGGGGCGGGGGGGGGGGTGGTT
CGGAGCAAATTTCGCTGTTACAAGAGACCACTGCTTTCTTTCACCCCCTT
GACCGACCACCCTGCCTACGATAAAATTAGCATATTAACATAGTAACCCT
TCGGAGGATAAAATTGACGATAAAAAAGGGGGACGGTCAAAGCAGCTGCC
GGTCACGGTCACTGCGTGATCTAAGTTGGCTCCCTAGTTAGAATGCCAAG
GAGTCGCACGTATTATACGTCACGGAAGCAAACAAATGACCTCTCTCTCT
CTGTCGCCCGTAAACCTGGGGGCGCTCACGCTGAGCCACCAAAGTTCATC
ATTGTTTTGGTCGCTATCCCTTATATCCCTTGAAAAGAGGCCGCTTAAAA
GGGGTCCCAGAGAGGTTATACGTAACCGTTTTAGTTCCGCACTGCGCAGA
AACATATATTTGACTCTAACTACACTATAATCAAGTAATGTGTCCCCGAA
ACGGGACTGCGGTTCTAAATGGGTTAAGGACGAACTTACCGTTAAAATGT
ATATACATACAAGGTTCCCCTTCGGGATGTTGGTCACTTGAAATCCCGGG
GGTGTCGCAAGTTGAAAATAGATCGCACATGCTTCGTACTTCCCTTTTTG
GACCCTTTTTGGAGCAAACTTGTGTTGCATAGACTGCTGTATAGTGTAAA
GGGAAAAGTAGTAGCGAGGAACATTCCTTTATACAAAACAAATGTCACCA
CAGTAGATGATATCGTAACTGAGGCACAGTGGGCTCCCGGTGTTAACCCC
TCAAGCACTGGTCCCACGAATTTGGGGACAAACTACTTGGAATTAGTGTG
GGACATTTTTTTCAGTTCTGAATGGGTTAAGAAGCTTCAGTTTGATGTCC
AGGCTCAATTTTGTTTCCGACGTCGATCAAGGTATTTTGTGTAGGATTTA
CAGTCGATCCCACACTGACTGGTGAGCTGTGTTTTTTAACCGAATTTTTC
TATTGTTCGTGCCAATCTGAGCTCCTTTTTCTCGACACGTTATTTCTTAA
CTGCAGGCACGTACGTACTACTATTAATACTGTATTTGTGTTGAATAGTG
ATTTGTTATATCGAGTAGATTCACGGAGAAAAACTCGTGAATCTTGACGC
CATTCAGTGTTTTAACCTTAAAAAATCGAAAACACGATCTGCGTCATTTT
TTTTGTCGTGGCTTCACTCTCGTACTGTAGTATTATAATACATTTTTGCA
GTAAATGCGCCTGATAAGTGTACTTCGTGTAGAATCCACGCAACCCAACG
GTAAATCCAAAGACCAGATATGAGGGCATACCGCTGACTCTGCCGCCTAC
ACCGATTGCGGACAGCAAGCGGCTCCCCAAAGCAACCGCTGGGCGCTGGC
GAACGAGAACATTGCGGCCTCGAAACCTCGAGGAGGAGGCGGCACGTCTC
AAACAAAAACGAAGCAAAATATCCCGAGAATCCGAGGCCGGGCAGACGAC
CTGTGAGATTGGCATCTTGCCAGCAGGGCCACACCGGCGACGCGGGAGAT
TAAAATATCACAGCTATGTCGTCATTCGGTCGGTGACTTCAAAATGTATC
ACGGGCCCGGCCCGGCCTGGCCCCACTCGCGCACCACTCGCAAATATTAT
TTGATTAAATGTCACAACTCGTGAGTTTCGTTTTCTGTTCGTTATGGATG
ACCCTGACTGAGCAGGCCCTCATAGGATACTGCTACAGCAGCACATATCA
CACAGATTACATACTCGTAGAGTGCAAAAGAGTTCAGTACGAAGACTATA
CACACAAAGCACACCCAGAGTACACACATACAGCACAAGAAGTGCCTGCA
CACAGAACAACAGTACCGACAGCATAACACAGAGCACATACAATACACAA
TACACAACGACTGAGTACACAGCACACACAGCAGTTAGATCTAGCTGTTG
TGCTGGAGAGCAGAGGGCACACAATAGTACGCAAAGGGTTATCACAGCTG
TACTGCGCTGTACAGCAGAGTATACACAAATATAGAGAGCTGTTACCCAA
CGAGACCCGCCCCGGTCCTAGATGGAGTATTTACTACCTTTAGGGCGGGT
ACCCTGGTGCGCGTTTAGCAGCCGAGTACTCGTCTAAGGGTACCCGTCGA
ACAGCTGGGTACCCGGGTGCCCGGAGCCCAAAATCTCGCGAGTATGAAGG
GTTATCTATACTCGTGACGGGTATTAGCTGTTTTGCCGTTTTCAACCGCT
GCTGTACTGCGCGATCAGAGGGGGAGTTTTTGCTGGAATCGGATGCACCA
AACATACAGACACCGACACGCCCATACCAAGAAAGACAGAACACAGCGGT
ATACTATACGTAGTTCGTAGCTGTCACAACTACACCTGCTGGGTCCCCCC
TGCTAGCTGTGTGGTACGGGTGGACACCACAGCCGCCACAAAGGCAACAA
TCTGAACAGCGGCTACTGCGTGTTGTACAGCTTCTTCTGTTGTACTGCTG
TACTGTTCGGCGCCGTGGCTGCTTTGTAGTTTGAAGTCTAGAGACATGCA
CCCGTAAAGTTCAGCAGTACTCGTACGTAGTACTACTGGCCTGCTGTACC
AAAATATTCGTACGCATGTAGATCGGCCTATCGTTTTACGTAGATAGACT
TAGATATGATATGCATGCATACGCACTCATCGTAGATCTGTGTATGTGTG
TACTCCACGTAGATTCAAAAATGTTGGAACCAAATTTGCAGATTTACATA
AAATGCGCACATGTAAATTTTCAAGCGTCTCGTGTCTCGTAGAACTGCTA
CTCCTGTACACAGCCCAGAGAGAGAGCAGACGCATGCAACGTGGTATCAA
CTACTGCTGCACGACGCTTGATGTGTGCCTCGTTCAATGTCAAGTCGGTG
TGGTCCTTATTCTTGTCTCGTGCGTGGTGCGTGCTGTGTGTGTTCCGTTC
ATGCGGGTGGGTCAAAAACGAACCAAAAACCAGCCGTACGACAGGTTTTG
CATGATAGGTGCGAGGCGGTGTCAAGTCGGAACGTCTCCCCTGAGTTATT
TGCCAGAATTCGCGACTTTGAAGGCCCAGAGCACGCCCCACGGGCCTCGG
CCGGGACCCGCACTTGCGCCGTGGTGTACACGCGGCCCCCCTGCGTGCCC
CGCAGCCGATAGCGCGAGAAAAGAACCGCGGCCGGAGGAGAAAAGTGAAA
GTATTCCGGGAAAATGTCCATTTGGTACCTATACATATATTTATATTTCC
ATCCCCACTTTTTTATCTTCGCCCTTCTTTTCTCTCTCCATACTAAAGAG
TAGTAGTAGTAGATAACTCAGATCCGGGGTCACTCAGAAGGCTCTTATCA
CCCCTCCCCACTCCCCACTACGTACGGTTCGTGATTTTTGCATATTTTTA
TTTTTTCGCGAGAAGACTGCAGCAGACCTTTTCTCCCCTCGTCGACTCGC
GTCGAATTCCGTCGTACAATATCCAATATTTGTATTATCGCCTTTGTTTC
GGAGTGAAATATCTCTTCGTACCAGGTATACTATTACGAGGGGGGCTTAT
TATATATCGTAATCCGAACACAACATGGACCCAAAAACCATGTACACCCC
CCTACTGGTATATGTTAAGACACCATAGTTGGTTCTGAGCAGTATTACGA
AGGACCATAGTAAATACCTGGTAGGGACCAAATATTGTTGGTAAAAATAG
GGAAATTTACAGGTGTTTTGTGTGTAGCACAGGTCCCCTGATCACTCTAG
GTTCCCCGTAATATTATATCATACGTCTCCCCGTTATTTTTCGTTTGTCT
TCGTTTGCTCCGGCGTGAAATACAGGAACGAGTACATCGTCAACCTGAAG
GAGGTGGAGAAGCGATCCCCTACGTGCCATCTGCAAGTGCCGCGGGAGGC
TTTGGAGTGAGTGCAATCATTGCCTTGCCTTGCCTTGCCTGGTCGGTGAA
AACCCGACGTGCTCCGTCCCGGCATCTTGTCGGGATGCGAGGGTCTCGTA
TGGTCGTACGACTATGGCCGGCCGGCCATTCACGACATGAGTACACACCC
CTCACCCCACTTCTTACGCTCCGCTCCGCTCGGCCTGTCCGTCTCCGTCG
CTAACTTCTCGCCGCTGGCCGGGCAGGAGGCTTGACGACGACGTGGAACA
AAACCCTGAACTCTTCGCGCAAGAGCTTCTCACCAGGTACGTACGTAAAA
AAAAAACGAACAGAGGGGTATCTTAACCCCTCAAGAACTGGTCCCACGTA
TCTGGGGACAAACTACTTGGAATCAGTGTGGGATAAGTTTTTCAGTTCTG
AACCTACAGTAGTATACTATTAATAAGTATAATGAGCTATACGGCAAAGA
TGAGTTTCGACGAAATCCTCGATCTCACAGCTGTTGTTTTATAAATTTTT
TATATGACGGTAAAAACAATTTAAGTTCTACTGCTGTCAATATTATGTCA
ATACTACGAGTATAATAGATCTGTGAGGATCGGCAGTGTTTCACGACTAA
CAACTAATCGGTAGGTGCTGTTCGCCATGTAGCTGACGTTAGTCGCCAAC
TCGGCTAACAAAGCCAGCTGATGGCCAGCCGACTTGTCGACTTAAGTCAG
GCGGACCAAATTAGTAAATGAGCCCTTCCCGGCCGAGCCCCCCCCCCCTC
CCAAAAAAACGAAAAAAACGAAAAAAAATGTATCCCACAAGTATGGAAAC
CCAATATGTCGGATAGTCGACACCCCCGGGAAACGACTATTACCAACCAT
TTGTCCGACTAATAACTAGTTGGTAAATTTTATGTCGTGCCCGACTCACC
GCTGTAGTCAATACACTACGTACCAGCCCTCTCATATGAAAAAAAGAGCC
CCTCAATATACTAAACAAATGCCTGAGATTTTTCGGGAAATATATAAAGT
TCGTGGAGCGCTTACCTCTCCCAAGTATGTGTGAATCGCAAGCCTTTTGC
AAGTAACAACTCTATATAGCCTGACATTCCGTTTGTGTGCTACGTACGGA
GGACAGGACACCTATAGTGCAACCTACCGGTATATACTACTGTAAGCAAA
CGAGCGTTAAGAAAGGAAAGCTGAGACACACGTACAGGAAAATAGAAATC
CGGGAGCTGTTGTACAGAAAGGTTTCACACTTCTGACAGATCGTGATCTA
TCTATCTACAAGATACCAGGTCGTTATCTAGATACGCTAGCTCCTCACCT
GCCGTTGTGAGAGGTTTGTGCTGGATCTGCATAGTAGTACAGATCCAACC
CAGGAAACATGTGCTAGGTCATGCAGATTATACGGGTCCCACCCAGCCAC
ATGAACTACATCATACATACATACGAGATCGCGAATACATCTGCCTTGAA
AGGTCTACTGCTTATATAGATCATGAAGTGGGAATAGATTATCCGTGCGA
GGCGTGGAAGGTTGGGTCTAATGGTGCACCGTAGAGCTTATCCATCAACA
ATCTGGCCGCGAATATAGTACCCGTTTGAACTCTGACATGAGTATTAAAC
GGAGCTTATAATTACCGACCAGAGTGGTGCCAAATAAGAGACCCAGCCTA
GGTCAGTTATTCCTGTTTCTGGGTGATTATACACTCCCTGCACTGTGTAT
ATGCATCTACAGATGTCGGGATCAGTTGGACTACAGCAGCACAGGACACC
TATTAATGATAAGAAACAGGCTAATAAGAAAGCCAGGCTGAGATTCATAG
AGGAAAATAAGAAATTCGGGAGTCGTTATCTTGAAATTAGTGTAGAAACC
ACCCTCTTTCGAATAAGAAATCCAGCCTCTGGACCAGATTTCCTGTTTCT
TATTATTAATAGGTGTCCTGTACTGTTGTAGTGTTGTAAGACTGGGTGTT
ACTCACTTTCGTGTAGAATCAAGCGTATATAGGAGAATAGTAGCTTATTT
ATTCCCAGAGCATTGATGGGCATCTGCCTGGCCCGGAAGGGCATCATTGT
CTCCTTCCGTTCTCATGATTACCCCGAATACGAACGCCAGTCCAAGGAAT
ACGAAAACGGACCAATTACCTACCAGGTATACTGAGATAATTACCGGCCT
TCCAAGCCCATACTATTACACTATTACGGGGGGGCATAGTAAATAGCACC
TACGGTACACACAAAAACCTATATAATTTACCTATTTTTACTCACAAAAT
TTGGTCCTATTTACTATGGTCCCACTATTAATAGCTCAACGCGAGAAATA
AACCCAGCCTGAGTCAGTTATTCCTGTTTCTGAGTGAGTATGAATACGCG
CCCGCCCTGTACCTGACTGCTGTATGTGTATGCGCATCGACAGATGTCGG
GATGAGTTCGGCCAGCTCAACGCGAGAGTCCTCGGGATAAAAACAGTGCG
CCAGACGGTCATGGACGGCTGGAATTCCGGCAAAGGCACGGCGGATCAAA
CAAGTGCTGGGGGGAACGAGGCAGGGCGGGGGGGGGGTGAGAGCTAA
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1040:111407..120953+

>mRNA_S-latissima_F_contig1040.370.1 ID=mRNA_S-latissima_F_contig1040.370.1|Name=mRNA_S-latissima_F_contig1040.370.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=870bp|location=Sequence derived from alignment at S-latissima_F_contig1040:111407..120953+ (Saccharina latissima SLPER63f female)
ATGGCTACCCCAAAGGCAGACCCTGTAGGCACGAAGGCGTTGTTAGCAAG
TCTAGAGAGCGTGGTGATGGACCTCAATGACATGGAGAACATGATCGAGA
ACTTTGAGGACTCCACAGCAGAGCCGTTCTTCTCCAAAGTATGGCTACCC
CAAAGGCAGACCCTGTAGGCACGAAGGCGTTGTTAGCAAGTCTAGAGAGC
GTGGTGATGGACCTCAATGACATGGAGAACATGATCGAGAACTTTGAGGA
CTCCACAGCAGAGCCGTTCTTCTCCAAAGTGAACGAGTACATCGTCAACC
TGAAGGAGGTGGAGAAGCGATCCCCTACGTGCCATCTGCAAGTGCCGCGG
GAGGCTTTGGAGAACGAGTACATCGTCAACCTGAAGGAGGTGGAGAAGCG
ATCCCCTACGTGCCATCTGCAAGTGCCGCGGGAGGCTTTGGAGAGGCTTG
ACGACGACGTGGAACAAAACCCTGAACTCTTCGCGCAAGAGCTTCTCACC
AGGAGGCTTGACGACGACGTGGAACAAAACCCTGAACTCTTCGCGCAAGA
GCTTCTCACCAGATGTCGGGATGAGTTCGGCCAGCTCAACGCGAGAGTCC
TCGGGATAAAAACAGTGCGCCAGACGGTCATGGACGGCTGGAATTCCGGC
AAAGGCACGGCGGATCAAACAAGTGCTGGGGGGAACGAGGCAGGGCGGGG
GGGGGGTGAGAGCTAAATGTCGGGATGAGTTCGGCCAGCTCAACGCGAGA
GTCCTCGGGATAAAAACAGTGCGCCAGACGGTCATGGACGGCTGGAATTC
CGGCAAAGGCACGGCGGATCAAACAAGTGCTGGGGGGAACGAGGCAGGGC
GGGGGGGGGGTGAGAGCTAA
back to top