mRNA_S-latissima_F_contig1035.325.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1035.325.1
Unique NamemRNA_S-latissima_F_contig1035.325.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 6.940e-66
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:    1 LELPQARPELGALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHNISAGWQSNVDLYK 333
            L+ PQARPELGALL  PQ+LLG DEFQLFPPSVRPQNLC IVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPP  +LD+ LGTYRLAPNAFGSHN+SAGWQSNVDLY+
Sbjct:  178 LDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQ 288
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.200e-31
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   22 PELGALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAF--GSHNISAGWQSNVDLY 330
            P L + L  P+   G D F LFP  ++P+  C ++GG G+RS LH+DPMEW GWN LLEG KLWTFLPP    +  LG+ R+    +  G +NISAGWQS+VDLY
Sbjct:  179 PSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLY 283
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A8J5Y022_DIALT (JmjC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y022_DIALT)

HSP 1 Score: 119 bits (298), Expect = 3.260e-30
Identity = 64/112 (57.14%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   22 PELGALLAAPQELLGADEFQL-FPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHN--ISAGWQSNVDLY--KRAG 342
            P+L   LA    L   D F+  FPP +RP   C IVGG GARS LH+DP EW+G NV LEGRKLW FLPP PEL A L  YRL   A+GS    +SAGWQS+ DLY  +RAG
Sbjct:   80 PQLERELALRPGLFEPDWFEAHFPPELRPSRTCVIVGGEGARSTLHADPFEWVGTNVCLEGRKLWRFLPPEPELSAQLRGYRLPSIAWGSQGGALSAGWQSDFDLYATRRAG 191
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-22
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   49 PQELLGA-DEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHNISAGWQS-NVDLY 330
            P  L G  D F LFP  +RP+  C I+GG GARSFLH DP EW G N LLEGRK+WTF PP     A LG  R+ P A+    +SAGW+S + DLY
Sbjct:  149 PPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLY 240
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 2.210e-19
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:   34 ALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHN-------ISAGWQSNVDLY 330
            +LL A    L  D F  FP  +RP  LC +VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R A   FG          I +GW+S+VDL+
Sbjct:  101 SLLEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLF 203
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A1Q9EEB4_SYMMI (Bifunctional arginine demethylase and lysyl-hydroxylase PSR n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EEB4_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 2.280e-19
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:   34 ALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHN-------ISAGWQSNVDLY 330
            +LL A    L  D F  FP  +RP  LC +VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R A   FG          I +GW+S+VDL+
Sbjct:  101 SLLEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLF 203
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 47/106 (44.34%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   34 ALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHN-------ISAGWQSNVDLY 330
            +LL A    L  D F  FP  +RP  LC +VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R     FG          I +GW+S+VDL+
Sbjct:  101 SLLEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLF 203
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.060e-10
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  193 LEGRKLWTFLPPSPELDAPLGTYRLAPNAFG-SHNISAGWQSNVDLYK 333
            +EG KLWTFLPP PE    L  YRL PNA+G S+N+SAGWQS VDLY+
Sbjct:    1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYR 46
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A7S0ZU07_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZU07_NOCSC)

HSP 1 Score: 55.5 bits (132), Expect = 6.490e-7
Identity = 22/52 (42.31%), Postives = 28/52 (53.85%), Query Frame = 1 
Query:   91 PSVRPQNLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSPELDA 246
            PS      C ++GG GA S LH DP+ W GWN L+ G   W   PPS  + +
Sbjct:   58 PSCLQCQTCMVIGGKGATSKLHRDPLTWFGWNFLVLGTTRWALFPPSTPISS 109
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BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Match: A0A7S1S9K8_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S9K8_ALECA)

HSP 1 Score: 49.7 bits (117), Expect = 7.130e-5
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:  109 NLCAIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPSP 234
            ++  I GG G RS  H+D ++W+GWN LL G KLW +   +P
Sbjct:  139 SMALIRGGKGTRSEFHADHLDWIGWNFLLRGEKLWRWWKRTP 180
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1035.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LQI0_ECTSI6.940e-6687.39JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2R9P6_9STRA6.200e-3152.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5Y022_DIALT3.260e-3057.14JmjC domain-containing protein n=2 Tax=Diacronema ... [more]
W7TWL4_9STRA1.860e-2254.17F-box protein n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A812XB14_9DINO2.210e-1945.28PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A1Q9EEB4_SYMMI2.280e-1945.28Bifunctional arginine demethylase and lysyl-hydrox... [more]
A0A812KFH2_9DINO5.470e-1944.34PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A835YWS3_9STRA2.060e-1066.67JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0ZU07_NOCSC6.490e-742.31Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S1S9K8_ALECA7.130e-545.24Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1035contigS-latissima_F_contig1035:151739..153855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue4.3e-53
Seed eggNOG ortholog2880.D8LQI0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ69@1,2S8PH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815402.4614077-CDS-S-latissima_F_contig1035:151738..1518961622815402.4614077-CDS-S-latissima_F_contig1035:151738..151896Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 151739..151896 +
1693924862.9847386-CDS-S-latissima_F_contig1035:151738..1518961693924862.9847386-CDS-S-latissima_F_contig1035:151738..151896Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 151739..151896 +
1622815402.475835-CDS-S-latissima_F_contig1035:153670..1538541622815402.475835-CDS-S-latissima_F_contig1035:153670..153854Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 153671..153854 +
1693924862.996784-CDS-S-latissima_F_contig1035:153670..1538541693924862.996784-CDS-S-latissima_F_contig1035:153670..153854Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 153671..153854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1035.325.1prot_S-latissima_F_contig1035.325.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1035 151739..153854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1035.325.1

>prot_S-latissima_F_contig1035.325.1 ID=prot_S-latissima_F_contig1035.325.1|Name=mRNA_S-latissima_F_contig1035.325.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=114bp
LELPQARPELGALLAAPQELLGADEFQLFPPSVRPQNLCAIVGGVGARSF
LHSDPMEWMGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGSHNIS
AGWQSNVDLYKRAG
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mRNA from alignment at S-latissima_F_contig1035:151739..153855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1035.325.1 ID=mRNA_S-latissima_F_contig1035.325.1|Name=mRNA_S-latissima_F_contig1035.325.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=2117bp|location=Sequence derived from alignment at S-latissima_F_contig1035:151739..153855+ (Saccharina latissima SLPER63f female)
CTAGAGCTTCCGCAAGCGAGGCCAGAGCTTGGCGCTCTACTAGCGGCGCC
GCAGGAGCTGCTGGGTGCGGATGAGTTCCAGCTTTTTCCTCCTTCAGTGA
GGCCTCAGAATTTGTGCGCCATCGTGGGCGGCGTTGGGGCGCGCTCGTTT
CTTCACAGGTGAGCACTAAAGGGTTGAAATTGACGCATGTTTGCCTTATA
AGGGTAGCACCTAATTGTTTGCCTTATAGGGGTAACAGCTAATGTTTGCC
TTATAGGGGTAGCATTTAATGTCAGCCTTATTTTAGGGATAGCATTTAAT
GTTTGCCTTATTATAGGGATAGCACCTAATGTTTGCCTTATAAGGGTAGC
ACCTAATTGTTTGCCTTATAGGGGTAGCACCTACTGTTTGCCTTAAAGGG
GTAGCATTTAATGTCGGCCTTATTATAGGGATAGCATTTAATGTCGGCCT
TATTTTAGGGATAGCATTTAATGTTTGCCTTATTATAGGGATAGCACCTA
ATGTTTGCCTTATAAGGGTAGCACCTAATTGTTTGCCTTATAGGGGTAGC
ACCTACTGTTTGCCTTAAAGGGGTAGCATTTAACGCTTGCCTTATTATAG
GGGTAGCACCTAATGTTTGCCTTATAGGGGTAGCACCTAATATTTGCCTT
ATAGGGGTAGCACATAATGTTTGCCTTATAGGGGTAGCACCTAATATTTG
CCTTATAGGGGTAGCACCTAATGTTTGCCTTATAGGGGTAGCACCTAATG
TTTACCTTATAGGGGTAGCATTTAATGCTTGCCTTATTATAGGGATAGCA
CCTAGTTTTTCCGAGGGTGGTGTTTCACTTGATTATAGTATAGAATCTCT
ACACCTCACCGAAAAACGGGTTCTGAGAAAAGCTAAGAATGCAACCCGAT
GAAGTATCCCAAAGCCTACGTAGGTATCGGGATAATGAGATGTACCATGT
TGATCGGGATAATTATGAGGCTCCTTACTTGAGGTATATACTAATACTAA
GTAATATATACTAACACTAAGTAAGCCACCTGCCTTTGGAGGAAAATAAA
AGCGCTACCCGTTGAACATTCCCATGGTCTAAGTATACAATAAAACTTAT
TGCAACACCACAAGAACGAAATCCCGACGATTTTGAGTTAAGGAGGCTAT
TGATAGTCATTCAGAAAAAAAGCAGCCAGAAAGTGGTACCTATATAGGTA
CCTATATACTGGCATGCCTCAATAGTCATACGAATAACCAGGCGGAATTG
TTTCGGCCAAAAGTGCTGCGTACATGCGGCAAAAAATCGGAATGAAAATG
GTCGGCCATGTGTGCCGGACGACGTGAGCGACGTAATTCCTTGGGCTCCT
ATCTACTATGTTGTCTACCTTTTTTGTGTGATCGAGTCAAATCTCAGCGC
AGAAAAGTTCGTCTGTACACATGGCACACTGCATTTGTTCGGCGCGAAAG
CATCCCGACCACGCGAGTAATCTCAAGCAGCACGGTTGCGGGGTTGACCA
CCCTTTCCCCTCGTTGTGCCCGATATTGCGGCTTGGCCGGCGACTCAAAT
CGGCGATTAAATACTAGGTATACAATACAGGGGGTAATCGCGAAACACTG
CTAATAATCCCAAACACAAAATACAAAACCACACAAAAAACTATACCAGG
TATGTAACTACAAATAATACAAGACACAAGACACAAAACGCAAGCAAGCA
CAAGCACAAAACACAGACCACAAAAGCACGGAACCCCCAAAAATACCCCA
CAAAACACAAAACACGCGCAAAATACACCGCCGCCATGTTTTTTTTCTGA
CGTGTGCGTGCTGCGCTCGCGGTCTCTAGCCTACAACAAGACACGCGCCG
CCCCCATTTCCCACCACCCTGCTGCCGCTCCTTTTGACACGCCCCCCCCC
CCCCCCCTCCCCTCCTGCTGCCTCGACCGCAGCGATCCCATGGAGTGGAT
GGGATGGAACGTTTTGCTCGAAGGACGAAAGCTGTGGACGTTCCTACCGC
CGTCGCCCGAGCTGGACGCTCCGCTTGGCACCTACCGCCTCGCCCCCAAT
GCGTTCGGCTCTCACAACATATCGGCGGGCTGGCAGAGCAACGTAGATCT
CTACAAGCGCGCGGGGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1035:151739..153855+

>mRNA_S-latissima_F_contig1035.325.1 ID=mRNA_S-latissima_F_contig1035.325.1|Name=mRNA_S-latissima_F_contig1035.325.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=684bp|location=Sequence derived from alignment at S-latissima_F_contig1035:151739..153855+ (Saccharina latissima SLPER63f female)
CTAGAGCTTCCGCAAGCGAGGCCAGAGCTTGGCGCTCTACTAGCGGCGCC
GCAGGAGCTGCTGGGTGCGGATGAGTTCCAGCTTTTTCCTCCTTCAGTGA
GGCCTCAGAATTTGTGCGCCATCGTGGGCGGCGTTGGGGCGCGCTCGTTT
CTTCACAGCTAGAGCTTCCGCAAGCGAGGCCAGAGCTTGGCGCTCTACTA
GCGGCGCCGCAGGAGCTGCTGGGTGCGGATGAGTTCCAGCTTTTTCCTCC
TTCAGTGAGGCCTCAGAATTTGTGCGCCATCGTGGGCGGCGTTGGGGCGC
GCTCGTTTCTTCACAGCGATCCCATGGAGTGGATGGGATGGAACGTTTTG
CTCGAAGGACGAAAGCTGTGGACGTTCCTACCGCCGTCGCCCGAGCTGGA
CGCTCCGCTTGGCACCTACCGCCTCGCCCCCAATGCGTTCGGCTCTCACA
ACATATCGGCGGGCTGGCAGAGCAACGTAGATCTCTACAAGCGCGCGGGG
CGATCCCATGGAGTGGATGGGATGGAACGTTTTGCTCGAAGGACGAAAGC
TGTGGACGTTCCTACCGCCGTCGCCCGAGCTGGACGCTCCGCTTGGCACC
TACCGCCTCGCCCCCAATGCGTTCGGCTCTCACAACATATCGGCGGGCTG
GCAGAGCAACGTAGATCTCTACAAGCGCGCGGGG
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