mRNA_S-latissima_F_contig1035.321.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1035.321.1
Unique NamemRNA_S-latissima_F_contig1035.321.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1035.321.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.040e-71
Identity = 123/186 (66.13%), Postives = 143/186 (76.88%), Query Frame = 1 
Query:  397 MYRHLLSSRAEVTVTGDASSAGRRALVVSVSHAGDEVKPMSLSAAIDISPEL--DVGDAVVAINDGPGPLASTVLIHQIKQAGATKKELWQGMLSPLLAHGRQFPSEEGAYVRLQEPISVSGTICRADWVDGASTRCRNTVGTGEQREEDWKASTCAVCKHFEASPCGEIFRRFLAASRRHAEKLK 948
            MYRHL S +AEVTVTGDASS  RRALV SVSHAG  V+P SLSA IDISP    D   + VA NDGPGPLAS VLI Q K+AGATK+E+W+G L P+LAH R+FPSE GAYVRL+EPI+V GTICRADWVDGAS  CR+T+  G++REEDW+ S C++C  F  SPC  IF RF+A S+R  E LK
Sbjct:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLK 186
[Close]
BLAST of mRNA_S-latissima_F_contig1035.321.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.090e-59
Identity = 108/222 (48.65%), Postives = 147/222 (66.22%), Query Frame = 1 
Query:  265 TGPMVAVFLDQPSVDKLKAQYPEARDGQLRKVVLQFSPSASEREMYRHLLSSRAEVTVTGDASSAGRRALVVSVSHAGDEVKPMSLSAAIDISPELDVGDAVVAINDGPGPLASTVLIHQIKQAGATKKELWQGMLSPLLAHGRQFPSEEGAYVRLQEPISVSGTICRADWVDGASTRCRNTVGTGEQREEDWKASTCAVCKHFEASPCGEIFRRFLAASRR 930
            TGPMVAV+LD  S++KL+ +YP  + G+LRKVV+++ PS  +R +Y       A V VTG+A S  R ALV SVS AG  V+P SLS A+D++P    GD       G GPL STVLI QIK+ GA  ++ W+G+L PL AH R FPSEEG+Y +L EP++++G+ICRADWV+  +  CR T   G +RE+ W    C++C   E+SPC +I ++F A S R
Sbjct:   60 TGPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTP----GDV------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTR 271
[Close]
BLAST of mRNA_S-latissima_F_contig1035.321.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.610e-57
Identity = 108/230 (46.96%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:  247 SPFPP--PTGPMVAVFLDQPSVDKLKAQYPEARDGQLRKVVLQFSPSASEREMYRHLLSSRAEVTVTGDASSAGRRALVVSVSHAGDEVKPMSLSAAIDISPELDVGDAVVAINDGPGPLASTVLIHQIKQAGATKKELWQGMLSPLLAHGRQFPSEEGAYVRLQEPISVSGTICRADWVDGASTRCRNTVGTGEQREEDWKASTCAVCKHFEASPCGEIFRRFLAASRR 930
            +P PP   TGPMVAV+LD  S++KL+ +YP    G+LRKVV+++ PS  +R +Y       A V +TG+ASS  R ALV SVS AG  V+P SLS A+D++P    G+       G GPL STVLI QIK+ GA  ++ W+G+L  L AH R F SEEG+Y +L EP++++G+ICRADWV+G +  CR T   G +RE+ W    C +C   E+SPC +I++ F A + R
Sbjct:   48 APSPPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTP----GEV------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTR 267
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1035.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQJ5_ECTSI1.040e-7166.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ55_ECTSI2.090e-5948.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT1_9PHAE2.610e-5746.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1035contigS-latissima_F_contig1035:92483..99740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog65071.PYU1_T014703
KEGG koko:K16743
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.function. Source PGD
EggNOG OGs1MGJQ@121069,2CP4U@1,2RXB2@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005940.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size1836
Cds size1233
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.8904328-UTR-S-latissima_F_contig1035:92482..930371622815401.8904328-UTR-S-latissima_F_contig1035:92482..93037Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1035 92483..93037 -
1693924862.627216-UTR-S-latissima_F_contig1035:92482..930371693924862.627216-UTR-S-latissima_F_contig1035:92482..93037Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1035 92483..93037 -
1622815401.9553313-UTR-S-latissima_F_contig1035:99692..997401622815401.9553313-UTR-S-latissima_F_contig1035:99692..99740Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1035 99693..99740 -
1693924862.69548-UTR-S-latissima_F_contig1035:99692..997401693924862.69548-UTR-S-latissima_F_contig1035:99692..99740Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1035 99693..99740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.900728-CDS-S-latissima_F_contig1035:93037..934101622815401.900728-CDS-S-latissima_F_contig1035:93037..93410Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 93038..93410 -
1693924862.6448834-CDS-S-latissima_F_contig1035:93037..934101693924862.6448834-CDS-S-latissima_F_contig1035:93037..93410Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 93038..93410 -
1622815401.9117672-CDS-S-latissima_F_contig1035:95232..954891622815401.9117672-CDS-S-latissima_F_contig1035:95232..95489Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 95233..95489 -
1693924862.6554916-CDS-S-latissima_F_contig1035:95232..954891693924862.6554916-CDS-S-latissima_F_contig1035:95232..95489Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 95233..95489 -
1622815401.922942-CDS-S-latissima_F_contig1035:96444..966601622815401.922942-CDS-S-latissima_F_contig1035:96444..96660Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 96445..96660 -
1693924862.6656516-CDS-S-latissima_F_contig1035:96444..966601693924862.6656516-CDS-S-latissima_F_contig1035:96444..96660Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 96445..96660 -
1622815401.933198-CDS-S-latissima_F_contig1035:97875..981731622815401.933198-CDS-S-latissima_F_contig1035:97875..98173Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 97876..98173 -
1693924862.675247-CDS-S-latissima_F_contig1035:97875..981731693924862.675247-CDS-S-latissima_F_contig1035:97875..98173Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 97876..98173 -
1622815401.9434829-CDS-S-latissima_F_contig1035:99603..996921622815401.9434829-CDS-S-latissima_F_contig1035:99603..99692Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 99604..99692 -
1693924862.6849227-CDS-S-latissima_F_contig1035:99603..996921693924862.6849227-CDS-S-latissima_F_contig1035:99603..99692Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1035 99604..99692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1035.321.1prot_S-latissima_F_contig1035.321.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1035 93038..99692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1035.321.1

>prot_S-latissima_F_contig1035.321.1 ID=prot_S-latissima_F_contig1035.321.1|Name=mRNA_S-latissima_F_contig1035.321.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=411bp
MHSFISFRSRGAYLTATAAGLWASSTRLETRTTAAAAAEPLLSSPRAAKT
KGKGKRRTSAGDSEKKSPFPPPTGPMVAVFLDQPSVDKLKAQYPEARDGQ
LRKVVLQFSPSASEREMYRHLLSSRAEVTVTGDASSAGRRALVVSVSHAG
DEVKPMSLSAAIDISPELDVGDAVVAINDGPGPLASTVLIHQIKQAGATK
KELWQGMLSPLLAHGRQFPSEEGAYVRLQEPISVSGTICRADWVDGASTR
CRNTVGTGEQREEDWKASTCAVCKHFEASPCGEIFRRFLAASRRHAEKLK
ASNKPEARAPNEEMGKEDTAETQRSVQGDKKAGNGSERVVAAGREHARKS
SQKNRSNSSGRARRKTKGGGGGESPGGKGQKETGQKGGKRLSKPGDIFQE
LRECSIFHDV*
back to top

mRNA from alignment at S-latissima_F_contig1035:92483..99740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1035.321.1 ID=mRNA_S-latissima_F_contig1035.321.1|Name=mRNA_S-latissima_F_contig1035.321.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=7258bp|location=Sequence derived from alignment at S-latissima_F_contig1035:92483..99740- (Saccharina latissima SLPER63f female)
CAGAGACACACAGCACGGCACTCGCCAGCAGTAAACCGTGAGGTTGTGAT
GCATAGTTTCATTTCTTTCCGCTCCAGGGGTGCATACTTGACAGCTACCG
CCGCGGGACTATGGGCTTCGTCAACGAGACTCGAGACGTGAGTCCATCGG
CAAGCAATAAACCAACAAACTGCTGTGCGTGGTTTCTGTGCTTTTTCGAC
ATGCATGTCTTGTTCGTACTTTGTACCACGGGCACAGCACACAGCAGACA
GCGGCCATGAGTACGAGTAGCAGGGTATGGTATTGAGCAAGCGGGGACTT
GCGAGCAACGCAAAAGAGCACTATCATGCATGTGAACACAATGAAAGTGG
TCTTGAGCGGGTGATAATGTATCGTGTGCATTAGAAGTGCGCCCGGACGA
AGATTGTACTCCCACGGAACATCGCTCATCGCTCCCAACAAATGCACTCT
CTCGAACTGCATGCCTGCGTGCGTACTCTTCTGTCCGTTACGTACTCGAA
CACTGGTAAACAACACTTGAGTCCATACCACGAGTATTCATATTCTGGTA
GCAACGTAGCAGTGTCACCGAGAGGGGCCTGGGCCGTCTCCAACGACAGC
CTGACTACGTGACCAGTACGTAGTCATGCTTGTGCCGTGTAGTCCAAGCT
CTTGGACTCGTATATAGAAGCCATGTTTGTGGGGCAGTATCGATGAAAGC
AGCACCTGGTCGGCGTTGTAACGGCTTTGAAACTACCCAGCACCGACCCA
ACAGCAGCAGTGCAGTCTCTCCGTACTGATGTAGGGGCCTGTGCCGTCAC
AGCTATATACGTACTGCGTAGAGCAGTACCTGCTGTAGTGACATACCTGG
TATTTGGTACTGTACTGTTGCAGTAGTACCGGAATACGGAGTACACTACC
AGGTACTTCTGTAGGGCGAGTTCCGCAACTGGATAACCCTGGAATTTTGT
ATGGGGGGGACATATGTGAACCATCCCCTAGTACCTCGTGAAACGGTAGG
ATTACAGTATGATAGTGACACACATGCCAGCATGCCAGGGCTTCAGGTAG
GCGTTTCCCCTAGTATTGCGTTGGCGCACGTAGTTTGGCGAAGTCTGTGG
CGTCTGGGGACAAGCTGGGATACCCTCGCGGGTTTATTCCTGATTCTGCC
ATTAATATAGCTGTATGTCGGCACGCCTTATGTCACCAACTACAGCAGCA
TTAGTTATGAGTCGGACTACTGCTGTAAGTTAATTGCTTCCCGGAGGTGC
CGAGTATTCCACTTATTATTGGGCTTCCATACGCACGTACCGGTACTTGC
AATAGGAAAGACTAAGGATTAGAATTGATGAATGCGGGCTGCTAGGCTAC
GGGCTAGGCTAGCGGGCTAGCGGGCTATACATTGTTTCTTGCTTGGGCGG
GGCCCCCTCGGCTGGAGAGGGCTGATTCGTCTCGCTTCGCTCGCCTGACT
TCAGCCCGCCGCAGCGAAGCCCCCCTTGTATGATATGTATCATACCAGGT
ACAAGTATGTTAGGGAAGCATCATTCAACAATAGCAACACAATCTCCCCT
CTTCTGTTTTTGTCCAGGCGAACAACCGCGGCAGCCGCAGCCGAGCCCCT
TCTATCTTCCCCACGTGCGGCGAAAACAAAGGGGAAGGGCAAGAGGCGTA
CCTCTGCAGGGGACAGCGAAAAAAAATCCCCGTTTCCACCACCCACCGGC
CCGATGGTGGCCGTGTTTCTAGACCAGCCGTCCGTGGACAAATTGAAGGC
TCAGTACCCAGAGGCTCGCGACGGCCAGTTGAGGAAGGTGGTCCTGCAGT
TCAGCCCTTCTGCCTCGGAGCGAGAGATGTATCGACACCTCTTGAGCAGC
AGGGCCGAAGTGACGGTGAGGCCGCTATCATATTTTTATCCCTTTTACCA
TGATACTGCTTGGAATGTGAACATTTACGTAGAATGTCCGTATCTACGTA
GAATATCAATATCTACGTATGATATCAATCATACCTACGTAGAATACCAA
ATGTCTATATACCAGGTACGTATGTAGAATATCAATATCTACGTAGAATA
TCGGTATGTACGTAAAATATCAATATTTATGTAGCCTATCAGTGCAAGTG
GAATATCTATACCTACGTACTGCTGTTCGAAGCGGTTTGGCAAAACGTGG
GTGCAGGAGGTTTCAGAGTGATAATCTACACGTTTCCACAAGCAACATAT
CTGGACTGGCTACGTAGCCGGTTTACGTTGTCCCGATATATAGGGAGCTG
CCACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCT
GCTGTTCCTACTGCTACTGCTACTGCTGCTACTGCTGCTGCTGCTCTTGC
TGCTACTGCTGCTGCTCCTACTCCTACTGCTGCTATTACTGCTGGTGCTA
CTGCTGGTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTACTGCTGCTGC
AACTGCTGCTGTTGTCGCTGAAAGAGCGACCACCGCTTTCAATCTTGTCG
AGACCGAAGACCGTTTCCCATCTTCTTAACACACACGTTTCGAGGAGACG
GCACGTTATCGTGTGAAACGGAGCAAGTATACATTAAAACTAAACGTAAA
AACACAGGCTTGAAAAAGGTCATTCATTTATTTATTCATTTTTTTAGACG
AAAAAAGAACTCGTCGTCGTCGTTTTTTCCTGAGCATTTTTTGTCACGTG
CATCCTTTTGAAACGGCCCTACCTTGTCGGTCACCCGTTAACCAGTACCT
GGTACAGTGCATCCACTTCTTGGGGGACAAACTACTGCTGCACATGCTCG
GGATTGTTCGTAGTAGGATCATTTTTGAAGATAAACCACTTGGATGGTGA
ACAGACGGTAGTTGTTGTTGATGTTAAAAAATAAAACTCACCACCATAAG
GTAGTCCATGCACACAAGTGTTTTGAGACCCCTCATGCAACTCAAAAACA
GGGGTCCGTATTTATTTTGGCGCCCGTCGAGATTATAAAAAAAAACACGC
GCGTTCGCTTGTATTGAAACAACGCAACAGGTGACTGGAGATGCCTCAAG
CGCAGGGCGGCGCGCTCTTGTCGTCTCCGTCTCCCACGCCGGAGACGAGG
TCAAGCCGATGTCTCTGTCGGCCGCGATTGACATATCGCCCGAACTCGAC
GTCGGCGACGCGGTGGTGGCGATTAACGATGGGCCGGGGCCCCTTGCGAG
TACTGTGCTGATCCATCAGATCAAGCAGGCGGGAGCGACCAAAAAGGTTC
GTACTGCGTCCTTTTTCCCCCCCCTTCCCCCCCCCCCCCCCATCCATCTG
TCTTGCTTTTACCCTACTTGTCCAGATCCTTCCCTTTCGTATCTCAGATT
CGGGGTCACATAGCGGGCACCCCCCTCCCCTCCCCCCCACTAAGGTGCAT
GCCTCCACTCAGGTGCATGTCTTAATATTTACCGGTTGGAGGGATGGGTG
GGGCGGTGGGAGTTACATAAGGGGGCTGCTACAAGGCGCGGCACCAAGAC
GCTCTACTGCACCGTGTATATAGCGATTTCTTGTTGCACGACTTTTGTTC
CCGCCGTGTCATTCGTAGAGCTTTGCTGTCGCACCACACGTCGCATAGAG
ATACCCCAGCGGCAAGCAGCTATTGTACTATTTTTTGCGTACTGCAGAGA
TAATCGTACACTACTTACTAATTATGAGGGCTCTTTACAGGTCAGGGCTC
TTCACAGGTCGAGACCCGACTCGCGGGTCGGATCAGGAAGTTTTTGAATC
TCACGGGTCGGGTCGGGTCGGGTCTCACGGATCGGGTCTCACGGATCGGG
TCTCACGGATCGGGTCGGGTCACCCTTGTACCCGACCGGACCCGAGCTGA
CCCGCGAGGTTTGACCCGACCCATGAACAGTCCTGCTAATTTTGAGTCGT
TTGTTCCGAAAAACGAGGGTTCATTTCTGAAAGAGTTAGTTAACCTGATT
AGGACTGCAGTTCCGTTGTGGAGACAAAATACTAGGAATTAGAGTCAGGT
TAAGGTTTATCTTGGAATTAGAGTGCAATACTAATCGGGTTAACCCCCCG
CCCCCCCCTGCCTGGTTGGTGAAAAACCGACATGCTCCGTCCCGGCATCG
TAGGGATGCGAGGGTCTATGCTCATACGACCACGGCCACGCACGACATGT
GGCTAATGAGTACACCCCCCCCTCCCACCCTTCTGGTACTCTCTCTTACA
GGAGTTGTGGCAGGGCATGCTCTCGCCCCTGTTAGCTCACGGCAGACAGT
TCCCCAGCGAAGAAGGAGCGTACGTCAGGCTGCAAGAGCCCATCAGCGTG
AGCGGTACCATTTGCCGCGCGGATTGGGTGGATGGGGCCAGCACGCGCTG
TCGGAATACCGTGGGCACCGGGGAACAGAGGGAGGAGGATTGGAAAGCTT
CGACGTGCGCCGTCTGCAAGCATTTCGAGGCTAGCCCGTGCGGTGAAATT
TTTCGAAGGTGCGCGCTCTGGCCTGACGCCTTATACGATAGTGCATACCT
TATGGCACTTTATTGCCTTCCGAGGCAAATAGTTGTGATTGTGACTGATG
CTCCCCAAGTGACCAACTACCAAATATCATTGAAATACCATTTTCGTTTT
CCACTATTACGGGGTACCATAGTAAATAGGGACCCCTACGGTACATACAA
AAACCTACATATTCACCTATTTGGGCAGGGTCGAGGGCTGGGACGACCCC
AGGTTTCCCACGGTTCAGGGCGTTATTCGGAGGGGGGTTAGCCCCGCGGC
GCTCCGAGATTTCATGCTGCAACAGGTGGGGACCCCTACGGTACATACAA
AAACCTATATATTCACCGATTTTTACCAACATCATTTTGTCCTATTTACT
GCGGTCCCCCCTAGTACGATTTCGTTATTTACATACCTACCAGGTACCAG
GTATGTACGAAGCGTTAATATGCCGTACCATTGATCATCGGGTCAGCCTT
TTATTTTTTTCAAAGCAAATATGGGACGGTATATAGTCCCGCATCAGGTT
TTATCTTTTTCTTTATGTTTGGTACGGAGACAGACACACCAAGGTGGGTG
GGTTGTGTGGCGTTACCACACTCTCGGGGGTCAGCAACCCGAGGTAATAA
TCTCAAGAATGCCCCCGAGGAGCCAGGATGGCCTTGAAGCATTAATATAG
TGATAATGAGGCGGTACGGTCTAGGGGATAGGACCTGGTATCCACAAAAA
GTCAGTTTTTTTGGGTGCTATTACTTGCTATTAGTATAGAGCTCCTCAAG
CGAGGGGCCTCAAGAACAATGAGGTGCTATCCCTTCCGTAGCATACATCG
CGCAGGGTGTCTTATGGCCCCGAGTCTGGGCGTTGGAGTAGAGAGTTTGA
GTGTTTGCTGGAGAAGCGGAACGTGTGCGGCGTTTTCCGGGCGCTTGACG
ATATGACTGCAGGGACGAAAAAGTAGATGGGCTACTACATAAAATAAATA
AAAAAAACCTGGTACATGACAGCTGTGAGTTCTCCTCCCGATCGGTCTAC
TGTACGCCAAGGGTACAACAAAAAAAAATCGACACTCCCACTTTTTTTTT
CGAGTCCCAGACACGAGGGGGGTATACTAAAATCAAGTAAACCAAACTGA
AAAAAAACATGTTTTGTTTTATTTCTGACAAAAATCCCAACCCGATACTC
GTAGTTTGTTTTGATTCCCGACATGGTGGTGAGTGCCATACTTGATTTTT
CACAATAATAACATAATAAAAACAACGCCAAAATTAAGTACTGGTATGCC
TTTAAATAGACACCGCTTTTAAATGTTTGTTTAACCCTTTTTCTACTGCA
GAAGTTGTCCCACACCAATCCCAAGCCAAGTAGCTTGTCGCCCAAACGTG
TGGTTTAAACTATGCCTTTTGGATGGTATACCTTCTGGTATACCTTCTGT
ATGCTATACTCGTTGTATGCTACCTTGTGTACCTTTTTGCGTGCTGTACC
TTTTGCTGGTAACCTCTCCTGTAGCTCCTTTCGAGGCCAACGGTAACGAA
GTGAAGATGTGCATGATGGTTATTACTCGTACGTAGATAAAACCAAAGCG
CTGGCGGGCCTGCGCCAGAGACACGCACTTCTCTTGTAGAAACCTTATGC
GAGATTGGTTATAAGGAAGAGCCACATGTTGGGTCAGGCTTGTACGCTAC
CTTACGTATCTCTCTGCCTTGTCTCGCTCACCAACAATTCCCTCAGTGGG
GGGTTAATCTGCTTGTCAGTATTCCCACCTTGCCTCGCTCATTAGCCTTC
CCTCGTTATCATGTGGAAACCCCCCAACAGGTTTCTAGCCGCCAGCAGAC
GGCACGCAGAAAAACTCAAGGCCTCCAACAAGCCTGAAGCGCGAGCACCA
AACGAAGAGATGGGTAAGGAGGATACAGCGGAAACTCAAAGGAGCGTCCA
GGGAGACAAAAAAGCCGGTAACGGCTCTGAGCGCGTCGTCGCCGCGGGGA
GGGAGCATGCCCGAAAATCTTCCCAGAAAAACAGATCGAATAGCAGTGGA
CGGGCGAGAAGAAAGACGAAGGGAGGAGGAGGAGGAGAAAGCCCGGGTGG
GAAGGGCCAAAAGGAGACCGGACAGAAAGGGGGGAAACGGCTGTCGAAAC
CTGGAGACATATTCCAGGAACTGAGGGAGTGTTCGATCTTCCACGACGTC
TAGAAGTCCCAATATGGGGGTTTAGTCTTGATGAGTCGGGTAGCCAGGGT
GGGCTACTTCGATTTAAGAGAACTCGATTTTTCGGAGAGAAACGCCGATT
TACGGGAGGTGCAAAAAGCTGTACGTACACATTTTGGTTTAATCCTTTTG
GGGCCGAGGTGTACCGACCTAAAATACGATAAGTGCGGTCTTCTATAGTG
CGGTGCTGAGGTGTACCGACCTAAAATACGATAAGTGCAGTCTTCGATAG
TGCGGTGCCGAGGTGTACCGACCTAAAACACGACAAATGCGGTCTTCTTC
AGTGCGGTGCTGAGGTGTACCGACCTAAAACACGACAAATGCGGTCTTCT
ATAGTGCGATGCCGAGGTGTACCGACCTAAAATACGACAAATGAGGTCTT
CTATAGTGCGGTGCCGAGGTGTACCGACCTAAAACACGACAAATCCGGTC
TTCTATAGTGCGGTGCCGAGTTGTACCGACCTAAAACACGACAAATGCGG
TCTTCTATAGTGCGGTGCCGAGGTGTACCGACCTAAAATACGATAAGTGC
GGTCTTCT
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1035:92483..99740-

>mRNA_S-latissima_F_contig1035.321.1 ID=mRNA_S-latissima_F_contig1035.321.1|Name=mRNA_S-latissima_F_contig1035.321.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2466bp|location=Sequence derived from alignment at S-latissima_F_contig1035:92483..99740- (Saccharina latissima SLPER63f female)
ATGCATAGTTTCATTTCTTTCCGCTCCAGGGGTGCATACTTGACAGCTAC
CGCCGCGGGACTATGGGCTTCGTCAACGAGACTCGAGACATGCATAGTTT
CATTTCTTTCCGCTCCAGGGGTGCATACTTGACAGCTACCGCCGCGGGAC
TATGGGCTTCGTCAACGAGACTCGAGACGCGAACAACCGCGGCAGCCGCA
GCCGAGCCCCTTCTATCTTCCCCACGTGCGGCGAAAACAAAGGGGAAGGG
CAAGAGGCGTACCTCTGCAGGGGACAGCGAAAAAAAATCCCCGTTTCCAC
CACCCACCGGCCCGATGGTGGCCGTGTTTCTAGACCAGCCGTCCGTGGAC
AAATTGAAGGCTCAGTACCCAGAGGCTCGCGACGGCCAGTTGAGGAAGGT
GGTCCTGCAGTTCAGCCCTTCTGCCTCGGAGCGAGAGATGTATCGACACC
TCTTGAGCAGCAGGGCCGAAGTGACGGCGAACAACCGCGGCAGCCGCAGC
CGAGCCCCTTCTATCTTCCCCACGTGCGGCGAAAACAAAGGGGAAGGGCA
AGAGGCGTACCTCTGCAGGGGACAGCGAAAAAAAATCCCCGTTTCCACCA
CCCACCGGCCCGATGGTGGCCGTGTTTCTAGACCAGCCGTCCGTGGACAA
ATTGAAGGCTCAGTACCCAGAGGCTCGCGACGGCCAGTTGAGGAAGGTGG
TCCTGCAGTTCAGCCCTTCTGCCTCGGAGCGAGAGATGTATCGACACCTC
TTGAGCAGCAGGGCCGAAGTGACGGTGACTGGAGATGCCTCAAGCGCAGG
GCGGCGCGCTCTTGTCGTCTCCGTCTCCCACGCCGGAGACGAGGTCAAGC
CGATGTCTCTGTCGGCCGCGATTGACATATCGCCCGAACTCGACGTCGGC
GACGCGGTGGTGGCGATTAACGATGGGCCGGGGCCCCTTGCGAGTACTGT
GCTGATCCATCAGATCAAGCAGGCGGGAGCGACCAAAAAGGTGACTGGAG
ATGCCTCAAGCGCAGGGCGGCGCGCTCTTGTCGTCTCCGTCTCCCACGCC
GGAGACGAGGTCAAGCCGATGTCTCTGTCGGCCGCGATTGACATATCGCC
CGAACTCGACGTCGGCGACGCGGTGGTGGCGATTAACGATGGGCCGGGGC
CCCTTGCGAGTACTGTGCTGATCCATCAGATCAAGCAGGCGGGAGCGACC
AAAAAGGAGTTGTGGCAGGGCATGCTCTCGCCCCTGTTAGCTCACGGCAG
ACAGTTCCCCAGCGAAGAAGGAGCGTACGTCAGGCTGCAAGAGCCCATCA
GCGTGAGCGGTACCATTTGCCGCGCGGATTGGGTGGATGGGGCCAGCACG
CGCTGTCGGAATACCGTGGGCACCGGGGAACAGAGGGAGGAGGATTGGAA
AGCTTCGACGTGCGCCGTCTGCAAGCATTTCGAGGCTAGCCCGTGCGGTG
AAATTTTTCGAAGGAGTTGTGGCAGGGCATGCTCTCGCCCCTGTTAGCTC
ACGGCAGACAGTTCCCCAGCGAAGAAGGAGCGTACGTCAGGCTGCAAGAG
CCCATCAGCGTGAGCGGTACCATTTGCCGCGCGGATTGGGTGGATGGGGC
CAGCACGCGCTGTCGGAATACCGTGGGCACCGGGGAACAGAGGGAGGAGG
ATTGGAAAGCTTCGACGTGCGCCGTCTGCAAGCATTTCGAGGCTAGCCCG
TGCGGTGAAATTTTTCGAAGGTTTCTAGCCGCCAGCAGACGGCACGCAGA
AAAACTCAAGGCCTCCAACAAGCCTGAAGCGCGAGCACCAAACGAAGAGA
TGGGTAAGGAGGATACAGCGGAAACTCAAAGGAGCGTCCAGGGAGACAAA
AAAGCCGGTAACGGCTCTGAGCGCGTCGTCGCCGCGGGGAGGGAGCATGC
CCGAAAATCTTCCCAGAAAAACAGATCGAATAGCAGTGGACGGGCGAGAA
GAAAGACGAAGGGAGGAGGAGGAGGAGAAAGCCCGGGTGGGAAGGGCCAA
AAGGAGACCGGACAGAAAGGGGGGAAACGGCTGTCGAAACCTGGAGACAT
ATTCCAGGAACTGAGGGAGTGTTCGATCTTCCACGACGTCTAGGTTTCTA
GCCGCCAGCAGACGGCACGCAGAAAAACTCAAGGCCTCCAACAAGCCTGA
AGCGCGAGCACCAAACGAAGAGATGGGTAAGGAGGATACAGCGGAAACTC
AAAGGAGCGTCCAGGGAGACAAAAAAGCCGGTAACGGCTCTGAGCGCGTC
GTCGCCGCGGGGAGGGAGCATGCCCGAAAATCTTCCCAGAAAAACAGATC
GAATAGCAGTGGACGGGCGAGAAGAAAGACGAAGGGAGGAGGAGGAGGAG
AAAGCCCGGGTGGGAAGGGCCAAAAGGAGACCGGACAGAAAGGGGGGAAA
CGGCTGTCGAAACCTGGAGACATATTCCAGGAACTGAGGGAGTGTTCGAT
CTTCCACGACGTCTAG
back to top