mRNA_S-latissima_F_contig1035.318.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: A0A6H5KXE1_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXE1_9PHAE) HSP 1 Score: 514 bits (1323), Expect = 3.480e-176 Identity = 269/347 (77.52%), Postives = 303/347 (87.32%), Query Frame = 1
Query: 85 MIGLASIARRPALAIAAAGGASACLYN--YVDKNGQGSRQAECEAPNIPHAGLKGVAQRLGPYVANIHHPDKVALRADKLGVKVYGVTDEAAHKAAGGLPVVRVAEAVIKAPIDDVALCWWQAARRKEWDSVNTQDSQLVRSLAPDARLVYLRGKPKKGGIVSSRDFCYVMYKAPPELVGAKAGSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPITTKAYYAIELDVKGWLPIKVVKAAADETPLTLAVLRDHIEKELSEEASLSPDAAAKHAVQRR-DSETSSEEGPIAGAWATREDLLDTKKLLEKQLKRAAAEERKSGIDLSDLRAQIKKEIAEVVRRL 1116
M GL +ARRPA+A+A AGGASAC+ Y+DK+ Q + A C+APN P +G+KGVAQRLG YV NI PDK+ LRA+KLGVKVY V D+AAHKAAGGLPVVRVA+A+IKAP+DDVALCWWQA RRKEWDSVNT DSQLVRSLAPDARLVY++GKPK+GG++SSRDFCYV +KAP ELVGAK GS LFVQAN ANEVP NNASTRGDVNS+LLLVP+DPITT+AYYAIE+DVKGWLP+KVVKAAADE PLTLAVLRDHIEKELSEEASLSP+AAAKHAV RR DSE S IAGAWATREDLL+TKKLLEKQLK+ +A+ERK GIDLS+LR IK+EIAEV RRL
Sbjct: 1 MFGLTQVARRPAVALAVAGGASACMLRNTYLDKSEQ-EQGALCQAPNAPQSGMKGVAQRLGAYVQNIEDPDKITLRANKLGVKVYDVVDQAAHKAAGGLPVVRVAQALIKAPVDDVALCWWQAGRRKEWDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPLNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIEKELSEEASLSPEAAAKHAVHRREDSEGKSGGESIAGAWATREDLLETKKLLEKQLKKVSADERKMGIDLSELRKHIKEEIAEVDRRL 346
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: D8LQJ8_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ8_ECTSI) HSP 1 Score: 402 bits (1033), Expect = 7.610e-134 Identity = 198/247 (80.16%), Postives = 224/247 (90.69%), Query Frame = 1
Query: 166 YVDKNGQGSRQAECEAPNIPHAGLKGVAQRLGPYVANIHHPDKVALRADKLGVKVYGVTDEAAHKAAGGLPVVRVAEAVIKAPIDDVALCWWQAARRKEWDSVNTQDSQLVRSLAPDARLVYLRGKPKKGGIVSSRDFCYVMYKAPPELVGAKAGSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPITTKAYYAIELDVKGWLPIKVVKAAADETPLTLAVLRDHIEKELSEEASLSPDAAAK 906
Y+DK+ + + A C+APN P +G+KGVAQRLG YV NI DK+ LRADKLGVKVY V D+AAHKAAGGLPVVRVA+A+IKAP++DVALCWWQA RRKEWDSVNT DSQLVRSLAPDARLVY++GKPK+GG++SSRDFCYV +KAP ELVGAK GS LFVQAN ANEVPPNNASTRGDVNS+LLLVP+DPITT+AYYAIE+DVKGWLP+KVVKAAADE PLTLAVLRDHIEKELS+EASLSP+AAAK
Sbjct: 6 YLDKS-ERDQGALCQAPNAPQSGMKGVAQRLGAYVQNIEDSDKITLRADKLGVKVYDVVDQAAHKAAGGLPVVRVAQALIKAPVEDVALCWWQAGRRKEWDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPPNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIEKELSDEASLSPEAAAK 251
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: A0A835YTY3_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY3_9STRA) HSP 1 Score: 274 bits (701), Expect = 4.220e-84 Identity = 137/225 (60.89%), Postives = 171/225 (76.00%), Query Frame = 1
Query: 199 AECEAPNIPHAGLKGVAQRLGPYVANIHHPDKVAL---RADKLGVKVYGVTDEAAHKAAGGLPVVRVAEAVIKAPIDDVALCWWQAARRKEWDSVNTQDSQLVRSLAPDARLVYLRGKPKKGGIVSSRDFCYVMYKAPPELVGAKAGSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPITTKAYYAIELDVKGWLPIKVVKAAADETPLTLAVLRDHIEKE 864
A C+AP A +K V RLG V ++ + + R D GV +Y VT+EAAH AGGLPVVRVAEAVIKAP+ +VA WW RK+WDSVNTQD QLV++L D RLVYL+GKPK+GG++SSRDF YVM++ P + +GA+ GS LF+Q NTA+EVP N++S RGDVNS+LLL P+D TT+A YAIE+DVKGWLP KVV AAADETPLTLAV+RDH+E++
Sbjct: 37 AACDAPG---ASVKSVTARLGRLVVDVPTLEATKVLTRRTDLNGVTIYSVTNEAAHSKAGGLPVVRVAEAVIKAPVAEVAALWWHVQSRKDWDSVNTQDCQLVKALGTDERLVYLQGKPKRGGVISSRDFAYVMHRVPAQELGARTGSALFIQTNTASEVPANSSSVRGDVNSLLLLEPLDATTTRARYAIEIDVKGWLPTKVVNAAADETPLTLAVMRDHLERQ 258
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: A0A4D9DBA7_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBA7_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.230e-50 Identity = 114/312 (36.54%), Postives = 176/312 (56.41%), Query Frame = 1
Query: 202 ECEAPNIPHAGLKGVAQRLGPYVANIHHPDKVALRADKLGVKVY-----GVTDEAAHKAAGGLPVVRVAEAVIKAPIDDVALCWWQAARRKEWDSVNTQDSQLVRSLAPDARLVYLRGKPKKGGIVSSRDFCYVMYKAPPELVGAKAGSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPITTKAYYAIELDVKGWLPIKVVKAAADETPLTLAVLRDHIEKELSEEASLSPDAAAKHAVQRRDSETSSEEGPIA--GAWATREDLLDTKKLLEKQLKRAAAEERKSGIDLSDLRAQIKKEIAEVVRRL 1116
+ + P A + R+ Y + + +K GVK+Y + D A GLPV R+ EAVI AP++ VA WW R WD VNT S++V +ARLVY++G PK ++SSRDF +V +K P +G G+ FVQ N AN +P N+ + RG++NSI+LL P+D TT+ Y E++ KGWLP V+AAAD+ P L V++ H+E E +E+A +A + R+ + + P+ A+REDLL KKLL+ +L+ A +E+K + L++L+++I+ ++ +V RL
Sbjct: 98 QVQQPATDPADTDSIVFRMQKYFTTASLEEVAKFKKEKAGVKIYTVKEGSIPDPAIGGRKTGLPVARIGEAVINAPLEQVATLWWVFNGRILWDKVNTLASEVVEEYK-NARLVYIKGTPKP--MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANSLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDA----EALVRRRASLREKDHTH---PLLVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARL 399
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: W7TWL2_9STRA (Lipid-binding START n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL2_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.910e-30 Identity = 72/188 (38.30%), Postives = 117/188 (62.23%), Query Frame = 1
Query: 559 IVSSRDFCYVMYKAPPELVGAKAGSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPITTKAYYAIELDVKGWLPIKVVKAAADETPLTLAVLRDHIEKELSEEASLSPDAAAKHAVQRRDSETSSEEGPIA--GAWATREDLLDTKKLLEKQLKRAAAEERKSGIDLSDLRAQIKKEIAEVVRRL 1116
++SSRDF +V +K P +G G+ FVQ N AN +P N+ + RG++NSI+LL P+D TT+ Y E++ KGWLP V+AAAD+ P L V++ H+E E +E+A +A + R+ + + P+ A+REDLL KKLL+ +L+ A +E+K + L++L+++I+ ++ +V RL
Sbjct: 1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDA----EALVRRRASLREKDHTH---PLLVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARL 181
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: A0A7R9UGI7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGI7_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.370e-12 Identity = 93/356 (26.12%), Postives = 153/356 (42.98%), Query Frame = 1
Query: 193 RQAECEAPNIP--HAGLK------GVAQRLGPYVANIHHP--DKVALRADKLGVKVYGVTDEAAHKA-----AGGLPV-------VRVAEAVIKAPIDDVALCWWQAARRKEWDSVNTQDSQLVRSL-----APDARLVYLRGKPKKGG---IVSSRDFCYVMYKAPPELVGAKA----GSVLFVQANTANEVPPNNASTRGDVNSILLLVPIDPIT-TKAYYAIELDVKGWLPI---------KVVKAAADETPLTLAVLRDHIEKELSEEASLSPDAAAKHAVQRRDSETSSEEGP----IAGAWATREDLLDTKKLLEKQLKRAAAEERKSGIDLSDLRAQIKKEIAEVVRRL 1116
R + C+A P HA + + +R GP++A P D++A +L + T HKA A GL + + +A +KA DVA W R +WD+ + S+++ + A R +YLRG+ G ++ RD + M + P +G A S L+V + + V TR VN ++LL PI T T+ EL +GW P + + A D L L+ IE + + + +A A++R E E G++ + E+L ++ L + + AEE+ G+DL+DL+ QI +++ V RRL
Sbjct: 31 RSSTCDASRSPRSHAAKEIQDRAAAICERFGPHLAAADKPENDRLAWALKRLDQQSGKATAGPGHKARLLRDASGLSSWMDEFGDITIVQATVKAAPRDVATAVWHLNARSKWDA-RVERSEVLETPELEMHADSMRTIYLRGRSGAGWRSFLLRDRDVVFTMCRTPVGALGRAAKESFASDLYVLVDRHDLVADEPGCTRARVNGLVLLRPIAAGTMTQVVTVTELKPQGWSPALWALGLGYPRHMHAEED-----LKALKAFIEDVVDDALNAKNEAETSAAMERLKGEGGEHESASLVNAVGSFVSHEELRALRETLRAKRGKIIAEEKSLGLDLTDLKKQIDRDLRTVERRL 380
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Match: D8LQJ9_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ9_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 3.410e-9 Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -2
Query: 1793 VQVGAICLSVSLAAVDNDKWGLLAVEHVDTSWGATKLYIHEKIA 1924
+++GAI LSVSLAAV+ DKWGLLAVE + TSWG+ LYIHEK+A
Sbjct: 418 MKIGAIALSVSLAAVNEDKWGLLAVEQIKTSWGSANLYIHEKLA 461 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1035.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1035.318.1 >prot_S-latissima_F_contig1035.318.1 ID=prot_S-latissima_F_contig1035.318.1|Name=mRNA_S-latissima_F_contig1035.318.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=345bp MIGLASIARRPALAIAAAGGASACLYNYVDKNGQGSRQAECEAPNIPHAGback to top mRNA from alignment at S-latissima_F_contig1035:40768..55080- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1035.318.1 ID=mRNA_S-latissima_F_contig1035.318.1|Name=mRNA_S-latissima_F_contig1035.318.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=14313bp|location=Sequence derived from alignment at S-latissima_F_contig1035:40768..55080- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1035:40768..55080- >mRNA_S-latissima_F_contig1035.318.1 ID=mRNA_S-latissima_F_contig1035.318.1|Name=mRNA_S-latissima_F_contig1035.318.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2070bp|location=Sequence derived from alignment at S-latissima_F_contig1035:40768..55080- (Saccharina latissima SLPER63f female)back to top |