mRNA_S-latissima_F_contig1034.308.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1034.308.1
Unique NamemRNA_S-latissima_F_contig1034.308.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1034.308.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-15
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = -1 
Query:   64 VAATVVAGKGRAEPPSDGSAXXXXXXXXXXXXXXXTSEQHAVMASVVVLSERLGARVFGTGMQMLSCIRLVLEHEQP 294
            VA+T  AG  ++EP +  +A                +EQHAVMASVVVL+ERLGARVFGTGMQMLSCIRLVLEHEQP
Sbjct:  845 VASTAEAGTDQSEPSASAAA---------------AAEQHAVMASVVVLAERLGARVFGTGMQMLSCIRLVLEHEQP 906
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BLAST of mRNA_S-latissima_F_contig1034.308.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.000e-15
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = -1 
Query:   64 VAATVVAGKGRAEPPSDGSAXXXXXXXXXXXXXXXTSEQHAVMASVVVLSERLGARVFGTGMQMLSCIRLVLEHEQP 294
            VA+    G G++EP +  +A                +EQHAVMASVVVL+ERLGARVFGTGMQMLSCIRLVLEHEQP
Sbjct:  875 VASMAEEGTGQSEPSASAAA---------------AAEQHAVMASVVVLAERLGARVFGTGMQMLSCIRLVLEHEQP 936
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1034.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX3_ECTSI1.160e-1561.04RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE4.000e-1559.74RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1034contigS-latissima_F_contig1034:98383..98784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815399.0739033-CDS-S-latissima_F_contig1034:98382..987841622815399.0739033-CDS-S-latissima_F_contig1034:98382..98784Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 98383..98784 +
1693924860.9253001-CDS-S-latissima_F_contig1034:98382..987841693924860.9253001-CDS-S-latissima_F_contig1034:98382..98784Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1034 98383..98784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1034.308.1prot_S-latissima_F_contig1034.308.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1034 98383..98784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1034.308.1

>prot_S-latissima_F_contig1034.308.1 ID=prot_S-latissima_F_contig1034.308.1|Name=mRNA_S-latissima_F_contig1034.308.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=134bp
ATAATVTAAAAAGHYTRASPSRLLVLEHQPYAGQHLHARSEHSRAQPLRE
DDDRRHDRVLLARRDSSSCCSSSSGRTSSGTIRRGLCSPFSCHHRRSHLL
RPSWRRSFLSGAAGIRRDFWGQRLTLSVSQRQVP
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mRNA from alignment at S-latissima_F_contig1034:98383..98784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1034.308.1 ID=mRNA_S-latissima_F_contig1034.308.1|Name=mRNA_S-latissima_F_contig1034.308.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=402bp|location=Sequence derived from alignment at S-latissima_F_contig1034:98383..98784+ (Saccharina latissima SLPER63f female)
GCTACCGCCGCCACCGTTACCGCCGCCGCCGCGGCTGGCCATTACACCCG
CGCTTCCCCATCCCGGCTGCTCGTGCTCGAGCACCAACCTTATGCAGGAC
AGCATCTGCATGCCCGTTCCGAACACTCGCGCGCCCAACCGCTCAGAGAG
GACGACGACCGACGCCATGACCGCGTGCTGCTCGCTCGTCGCGATAGCAG
CAGCTGCTGCAGCAGCAGCAGCGGCAGAACCAGCAGCGGAACCATCAGAA
GGGGGCTCTGCTCGCCCTTTTCCTGCCACCACCGTCGCAGCCACCTTTTG
CGACCCTCGTGGCGCCGCTCCTTCCTGTCGGGTGCCGCGGGCATCCGCCG
CGATTTTTGGGGCCAGCGCTTGACTCTCTCCGTCTCTCAGCGACAGGTAC
CG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1034:98383..98784+

>mRNA_S-latissima_F_contig1034.308.1 ID=mRNA_S-latissima_F_contig1034.308.1|Name=mRNA_S-latissima_F_contig1034.308.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=804bp|location=Sequence derived from alignment at S-latissima_F_contig1034:98383..98784+ (Saccharina latissima SLPER63f female)
GCTACCGCCGCCACCGTTACCGCCGCCGCCGCGGCTGGCCATTACACCCG
CGCTTCCCCATCCCGGCTGCTCGTGCTCGAGCACCAACCTTATGCAGGAC
AGCATCTGCATGCCCGTTCCGAACACTCGCGCGCCCAACCGCTCAGAGAG
GACGACGACCGACGCCATGACCGCGTGCTGCTCGCTCGTCGCGATAGCAG
CAGCTGCTGCAGCAGCAGCAGCGGCAGAACCAGCAGCGGAACCATCAGAA
GGGGGCTCTGCTCGCCCTTTTCCTGCCACCACCGTCGCAGCCACCTTTTG
CGACCCTCGTGGCGCCGCTCCTTCCTGTCGGGTGCCGCGGGCATCCGCCG
CGATTTTTGGGGCCAGCGCTTGACTCTCTCCGTCTCTCAGCGACAGGTAC
CGGCTACCGCCGCCACCGTTACCGCCGCCGCCGCGGCTGGCCATTACACC
CGCGCTTCCCCATCCCGGCTGCTCGTGCTCGAGCACCAACCTTATGCAGG
ACAGCATCTGCATGCCCGTTCCGAACACTCGCGCGCCCAACCGCTCAGAG
AGGACGACGACCGACGCCATGACCGCGTGCTGCTCGCTCGTCGCGATAGC
AGCAGCTGCTGCAGCAGCAGCAGCGGCAGAACCAGCAGCGGAACCATCAG
AAGGGGGCTCTGCTCGCCCTTTTCCTGCCACCACCGTCGCAGCCACCTTT
TGCGACCCTCGTGGCGCCGCTCCTTCCTGTCGGGTGCCGCGGGCATCCGC
CGCGATTTTTGGGGCCAGCGCTTGACTCTCTCCGTCTCTCAGCGACAGGT
ACCG
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