mRNA_S-latissima_F_contig1033.294.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1033.294.1
Unique NamemRNA_S-latissima_F_contig1033.294.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 1.520e-142
Identity = 195/245 (79.59%), Postives = 217/245 (88.57%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEI 840
            M RT FVALA GM+GAANALKV TPS+GLTVIADRTYTVEW GTS +NRFEIDLYYCGS CMED+CG+WVTALCPYGE+GCPDNEGDYDI+MPEPM GTSGSGYKVRV D+ DEED DCSD+FYL+ S EAP  GD DGP+L+VTSPA GDLA  C EYTVEFDYDNGVGSSVDRFAIDLY+++G GDCGT+V ++CDK +IGCKDSMGDYDVEIPCDTD+GEYK+RV RFED SL+ CSG F I
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
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BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 6.600e-128
Identity = 186/257 (72.37%), Postives = 212/257 (82.49%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSDGSKGGDSSS 876
            MART FVALA  M+GAANAL+VVTPS  L V+ADRTYTVEW G +++ RFEIDLY+CGS CMED CG+WVTALCPYGEEGCPDNEGDYDI+MPEPMSG S SGYKVRV+DV DE+  DCSD FYL+ S++AP AG   G  L VTSPAEGD AEA  EYTVEFDYDNGVGS VDRF+IDLY ++G GDCGT+V ++CDK SIGCKDSMGDYDVEIP DT++G+YK+RVGRFED  L+GCSG F I+     GGD  S
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTG-ADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM-----GGDDES 251
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 5.930e-124
Identity = 180/257 (70.04%), Postives = 206/257 (80.16%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSDGSKGGDSSS 876
            M RT FVALA GM+G A+AL+VVTP+ G  V++ R YTVEW GT  N RFEIDLYYC S CMEDECGEWVTALCPYGE+GCPDNEGDYDI+MPEPMSGTSGSGYKVRV DVDDE+  DCSD+FYL+   +AP A D+ GP + VTSP+ GD AEA  EYTVEFDYDNG+GSSV RFAIDLY + GSGDCGT++  LCDK +IGCKDSMGDYDVEIP D ++G Y +RVG FED S++GCS  FEI+     G D SS
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL-----GADDSS 253
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 8.660e-123
Identity = 172/234 (73.50%), Postives = 199/234 (85.04%), Query Frame = 1 
Query:  142 MIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIV 843
            M+GAA+AL+VVTP+EG  V+A R YTVEW GT  NNR+EIDLYYCGS CMEDECG+WVTALCPYGE+GCPDNEGDYDI+MPEPMSGTSGSGYKVRV DVDD++ GDCSD+FYL+   EAP AGD+ GP + VTSP+ GD AEA  EYTVEFDYDNG+GSSV RFAIDLY + GSGDCGT++  LCDK +IGCKDSMGDYDVEIP D ++G Y +RVG FED S++GCS  FEI+
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.880e-118
Identity = 167/207 (80.68%), Postives = 185/207 (89.37%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDS 726
            MART FVALA GM+GAANALKV TPS+GLTVIADRTYTVEW GTS +NRFEIDLYYCGS CMED+CG+WVTALCPYGE+GCPDNEGDYDI+MPEPMSGTSGSGYKVRV D+ DEED DCSD+FYLI S EAP  GD DGP+L+VTSPA GDLA  C EYTVEFDYDNGVGS VDRFAIDLY+++G GDCGT+V ++CDK +IGCKDS
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 4.670e-111
Identity = 172/249 (69.08%), Postives = 200/249 (80.32%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYK-SEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSD 849
            MARTAF ALA GM+GAANAL+VV+P+ G++VIADRTYTVEW GTS++ RFEIDLYYCGS+CMEDECG+WVTALCPYG +GCPD +GDYDI+MPEPM+GTS SGYKV V D +DE    CS DF L+ S +AP AG+  G SL VTSP++GD A A   YTVE+DY+NG+GSS DRFAIDLY    G+GDCGT+VA LCDK SIGC DS GDYDVEIP DT +G Y VRVG F D  +F CS  FEIV+D
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDS-RFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246
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BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 2.460e-110
Identity = 171/257 (66.54%), Postives = 199/257 (77.43%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSDGSKGGDSSS 876
            MARTAF ALA GM+GAANAL+VV+P+ G  V+AD  YTVEW G + + R++IDLYYCGS CMEDECG+WVTALCPYG++GCPD +GDYD++MPEPM GTS SGYKV V D  DE D  CS DF LI S EAP A D  G  + VTSP++GD A A  EYTVEFDYDNG+GSSV+RFAIDLY S GSGDCGT+V  +CDK SIGCKDS GDYDV IP  T+SG Y +RVG FED  ++GCS +FEIV     GG+S S
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV-----GGESMS 249
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.710e-105
Identity = 160/245 (65.31%), Postives = 193/245 (78.78%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEI 840
            MARTAF A+A GM+ AANAL+VV+P  G++V+ADR YTVEW GT+   RFEIDLYYC S+CM+D CG+WVTALCPYG +GCPD+ GDYDIIMPEPMSGTS SGYKV V + +DE D  CSDDF LI S++AP+AG+  G SL VTSP++GD A A   YTVE+DY+NG GSS DRFA+DLY   G+GDCGT+V  LCD+ SIGC DS GDYDVEIP DT +G Y +RVG F+D  ++ CS  FE+
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTT-TGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 8.160e-91
Identity = 140/185 (75.68%), Postives = 152/185 (82.16%), Query Frame = 1 
Query:  289 MEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIV 843
            +EDECGEWVTALCPYG EGCPDNEGDYDI+MPEPMSGTSGSGYKVRV DVD  +D DCSD+FYL+ S EAP  G  D P L VTSP+ GD A+A  EYTVEFDYDNGVGS VDRF IDLY   G+GDCGTWV NLCDKE+IGCKDSMGDYDVEIP     G Y +RVGRFED +L+GCSG FEIV
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIV 196
[Close]
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 1.810e-89
Identity = 147/256 (57.42%), Postives = 176/256 (68.75%), Query Frame = 1 
Query:  106 MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRFEIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTSGSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEGDLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKESIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSDGSKGGDSS 873
            MARTAF ALA GM+GA NAL+V +P+ G  ++A  + TVEW GTS + RF+IDLYYCGS CMEDECG+WVTALCPYG++GCPD +GDYD++MPEPM GTS SGYKV V D  DE D  CS +F L+ S                                  FD+DNG GSSV+RF+IDLY S GSGDCGT+V ++CDK SIGCKDS GDYDV IP DT+SG Y +RVG FED  +FGCS +FEI+     GG+SS
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTS-SGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEII-----GGESS 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1033.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE1.520e-14279.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI6.600e-12872.37EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JFT9_9PHAE5.930e-12470.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI8.660e-12373.50EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI1.880e-11880.68Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D7G3F0_ECTSI4.670e-11169.08EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI2.460e-11066.54Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE1.710e-10565.31GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JEJ8_9PHAE8.160e-9175.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE1.810e-8957.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1033contigS-latissima_F_contig1033:37771..44195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_003200.1
Exons5
Model size1733
Cds size885
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.4852219-UTR-S-latissima_F_contig1033:37770..378751622815398.4852219-UTR-S-latissima_F_contig1033:37770..37875Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1033 37771..37875 +
1693924860.5718026-UTR-S-latissima_F_contig1033:37770..378751693924860.5718026-UTR-S-latissima_F_contig1033:37770..37875Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1033 37771..37875 +
1622815398.5490787-UTR-S-latissima_F_contig1033:43452..441951622815398.5490787-UTR-S-latissima_F_contig1033:43452..44195Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1033 43453..44195 +
1693924860.6385148-UTR-S-latissima_F_contig1033:43452..441951693924860.6385148-UTR-S-latissima_F_contig1033:43452..44195Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1033 43453..44195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.4993944-CDS-S-latissima_F_contig1033:37875..379791622815398.4993944-CDS-S-latissima_F_contig1033:37875..37979Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 37876..37979 +
1693924860.5895355-CDS-S-latissima_F_contig1033:37875..379791693924860.5895355-CDS-S-latissima_F_contig1033:37875..37979Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 37876..37979 +
1622815398.5099204-CDS-S-latissima_F_contig1033:38720..388051622815398.5099204-CDS-S-latissima_F_contig1033:38720..38805Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 38721..38805 +
1693924860.6026406-CDS-S-latissima_F_contig1033:38720..388051693924860.6026406-CDS-S-latissima_F_contig1033:38720..38805Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 38721..38805 +
1622815398.52027-CDS-S-latissima_F_contig1033:39467..397641622815398.52027-CDS-S-latissima_F_contig1033:39467..39764Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 39468..39764 +
1693924860.6125956-CDS-S-latissima_F_contig1033:39467..397641693924860.6125956-CDS-S-latissima_F_contig1033:39467..39764Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 39468..39764 +
1622815398.5301383-CDS-S-latissima_F_contig1033:41400..415361622815398.5301383-CDS-S-latissima_F_contig1033:41400..41536Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 41401..41536 +
1693924860.6227643-CDS-S-latissima_F_contig1033:41400..415361693924860.6227643-CDS-S-latissima_F_contig1033:41400..41536Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 41401..41536 +
1622815398.5396075-CDS-S-latissima_F_contig1033:43189..434521622815398.5396075-CDS-S-latissima_F_contig1033:43189..43452Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 43190..43452 +
1693924860.6307645-CDS-S-latissima_F_contig1033:43189..434521693924860.6307645-CDS-S-latissima_F_contig1033:43189..43452Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1033 43190..43452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1033.294.1prot_S-latissima_F_contig1033.294.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1033 37876..43452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1033.294.1

>prot_S-latissima_F_contig1033.294.1 ID=prot_S-latissima_F_contig1033.294.1|Name=mRNA_S-latissima_F_contig1033.294.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=295bp
MARTAFVALAVGMIGAANALKVVTPSEGLTVIADRTYTVEWEGTSENNRF
EIDLYYCGSYCMEDECGEWVTALCPYGEEGCPDNEGDYDIIMPEPMSGTS
GSGYKVRVVDVDDEEDGDCSDDFYLIGSDEAPKAGDSDGPSLKVTSPAEG
DLAEACNEYTVEFDYDNGVGSSVDRFAIDLYKSEGSGDCGTWVANLCDKE
SIGCKDSMGDYDVEIPCDTDSGEYKVRVGRFEDSSLFGCSGAFEIVSDGS
KGGDSSSGDSDSDSDSDSDSDSDSDDNGNGGKDSSDDMSMSYSF*
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mRNA from alignment at S-latissima_F_contig1033:37771..44195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1033.294.1 ID=mRNA_S-latissima_F_contig1033.294.1|Name=mRNA_S-latissima_F_contig1033.294.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6425bp|location=Sequence derived from alignment at S-latissima_F_contig1033:37771..44195+ (Saccharina latissima SLPER63f female)
ACGCAAATTTCCAATCTCGTCACACCTACACAACTTCGGCTCGGCTCGGC
AAAGCAAAGCAACAACCTCCTACTACTCCCTTCTTCTTCTTCTCTCTTTG
AAAAGATGGCTCGCACTGCTTTCGTTGCTTTGGCTGTGGGGATGATCGGC
GCCGCTAACGCGCTCAAGGTGGTGACGCCGTCCGAGGGCCTCACCGTCAT
CGCCGACAGGTGAGAGCGACTATAACAGCAGAGCAGCGCGCCACAAGGGC
GGGGGGGGGAGAGACGAAATAATGCCGCGCGGTGCCCAGTGTGCCATAGG
ATGCTTGGGAGAGGCGAACCTGCTAGCCCACCAACGGGGGGGGGGCGGGG
CGGGGCGGGGGGGTGGCTTGCTCTGTGTTTCGTTTTGCGTGGCGGCTGGC
TTTTGTTATTATATTGTGGGTGGAACGTTGGCGGTGGATCGATTGAGAGA
TGAGAGATGCCGAACAAAAAACACGAACGAACGCACTTTTTTTCGGCCGA
TCTATCGGCTTTATTATTTTTGTCTTTCTTGGAGTGAGTGTCGTTCGTAC
TGTATCTTTATTGAACCAGCCAGCAACAAACAGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGGTGTCTTGTCTGTCTGGTCTATACACTGCTGCTG
CTGACGCTGGTGGTGCTGGTGGTGCTGCTGCTGTGTGCTGGTGCTGCTTG
CCGTGGTGGTGTTGTTGCCTGCTGGCTTTCTTTTCCGAATGTTTACGCGA
GGTCTTTTGTTCTAGGGAGAGAGCCGATTCACACAACTCGCTCGCACGCC
GCATGGCTCTCTATATCAATCACTCACTGGATCTCGCTCGTGCTCTCGTG
CTCTCGTGCTCGTTCTTTTTGTGCTCGTTCGCTGGCTTTGGTCTACGTAA
TAATCGTTTCGTTTTTTTTTTCAATAAAAAAAATTGTGATGCATTGAAAG
GACGTACACCGTGGAGTGGGAAGGCACCAGCGAAAACAACCGGTTCGAGA
TCGACCTGTACTACTGCGGCTCCTACTGCATGGAGGTGAGAGGGTGTGCC
CCCCCGTGCGCGCGGTGGTCTGCCTGCGCGTGTCCTTGTTGCGTATGTAT
GCGTAGGTATCGTCTTACGATTCCGAACCTACCTGGAATATAATATTCAA
TCGAATCATATATACGACGAATGAATGTGATACAAAAATACCGTACAAAA
AAAAAAGAACTGGCTCTTGCCCTGCCCAAACTTTTCGGAAGTTAATTTTA
CCGATTTCGAGAGACGAACTAACGAACATTTCTACAAGCAAGCCGCAGCA
GTATATATACCATCGGCCCTTCTCCTCCTCCTGCCGTTCGTTCGTGGCTT
GTCGACAAGCAAAACACTGCGCTGCTCGCCCGCTCGCTTTTCCTTGTTTC
GTTGTGTCGTCGCCCGTCTCTCTCGGCGGCCCGACCGGGTCATGGATTTG
TTGTTGTTGTTGTCGATATTTACCCAGAGAGGTCTTGTGCCGTTGGGAAA
CTGAAAAAATATGAAACGAAAAAATCAGAAAAAAAAAAAAAAATGTATGG
TCCACAGCATACAGTAGAGAGGAGATGGGAAAATATATATATATACCGGG
CAACTCTTCTGTTCTGTATTTTTTCTGACCGAAAGACCTCCGTCCCTCCC
TCCCTCCCTCTTTCCCTCCCTCCCTCTCCAAATCCCACCCGGCACAGGAC
GAGTGCGGTGAGTGGGTGACCGCCCTCTGCCCCTACGGCGAGGAGGGCTG
CCCCGACAACGAGGGCGACTACGACATCATCATGCCCGAGCCCATGTCGG
GAACCTCCGGGTCCGGGTACAAGGTGCGCGTGGTGGACGTGGACGACGAG
GAGGACGGCGACTGCTCCGATGACTTCTACCTCATCGGCAGCGACGAGGC
GCCCAAGGCGGGCGACTCGGACGGGCCTTCGCTCAAGGTCACCTCTCCCG
CGGAGGGCGACCTGGCGGAAGCGTGCAACGAGTACACGGTCGAGGTGAGA
TGGTGGTACAGCAGTAGTGAAGAGAGCAGGGCATATACAGATATGTGCTG
CATGAGATGCATGTATGTGTGCGCGCGAGAGAGAGAAGAGAGCGAGCGGA
GAGTCGGTGTGCGACATGCGAGAGGAGGGGAATCTTTTTTATGGTCGTGA
TTTTTTTTGGGCTGCGCTGTTTCCGTCTTTTGCATACAGTATATGAACGC
TTCGCACACAACAAGGAGCGCGGAGAGCGCGACTACGCTCGTGAGCAACA
CGCAGTATACGTACTCGTACAGCAGTACGTACGACGACATCCTACTCTAC
ATAATCATACGTACCATGGGGTCATACGTACTCGTACATACATGCGAGTA
ATACGATTCTGTACAAACGACGAGAGATCTTTTTTTCTTTTTTTTTGTTG
AACATGGAAGGGCGGGAATCATTTTTTCTTTTGAAACGATCTTCAAGAAG
AGCAGAGCAGCAGCAGCAGCGTACCGTATGCATGCTGCAGGCCTCCTCGC
CGTGCCAACTGCGCGCGCTTGGGGCTTGTCAGCTCCAAACGAACGATGGA
TAGAGATTAGAGATGGACAGCTTTCTTTACGTAGCGAGCGGTGATACTCT
GTACGTCTCCGTCTCTTGTAGATTTGTTTAGATTTTTTTTTTCTCGAATT
GGATTGGGATTATTCGGGATCCACACGATGTTCGACATCTTCTGTTCTGT
CGACTGCTGCTGGTGCTGTGTCTTATTCCCCGAGCTGAAAAACATCGCAG
CTATAATATGATACGACGAGTACGAGTATTATGTGATGCACACCGTACGG
ATATTTTACCAGTATCATGTTACGAAACAATCACGCGGTGTGAAGCGCGC
TGGATCTCTTGACTCGAGTAAGAAAGTTCGAAAGCTTTCGCCGCCGCTGT
TGTGTTGGCTTCTCGCCTGGCTGGCTGTATGGTCTACCGACTTTAATCTG
TGCTCGATCTATGCACGATAATAATAAATTAAATACACCCTGATATGTAC
GAGTAGACCACTCCTCCTTCAATTCGTACGTCTATACCGCGCTGCGATCT
CGTGTACAACAACCCGAAACATAGTAATACGACCGACCGTCGTAGTCGTA
TCATAGCGTAGTATATAGTGTAACGTGGTTTCGAGTTGCGACCAAACAAA
GCTTATGGAGTAGGAGGAGGAGGACTGAAAACCCAACCTGCCGCTCGCTG
CTGTTTTTCCTTTTACTGTTGTATTTCTACTTTGTACATGCATGGTATAC
TGCTGTGTGACCTCCTTTCAATTACTACGTCTACCCCCCTCGTACTTGTT
GTTTTGTTGTTGTTGTTGTTGTTGTTTGTTTGAGACGCCGGGTTAATGGC
CGCAACTTGTTGCCACAAACTGAATCATGTACAAGGTATTTCTACTTGTA
CGTACAGGCGTACACTGCTGCTGCTGCTGTTGTTACAGTAGTATTAATAG
TATAGATTTATTTGACACTTGACTGCCTCGTTTGACACTTGACTGACTCT
TTTTTTGTTTGCCTCCTCCTCCCCTCCCTCTCTCTCTCTCTCTCTCTGCC
CTGTGTGTGTCCGACGACCCAATCCGTCTCCTTTCGATCTTATTTTGTAT
TGCAACCACCTCATGATGATGATGAATCAGTTCGACTACGACAACGGTGT
GGGATCGAGCGTGGACCGGTTCGCGATCGACCTCTACAAGTCCGAGGGCA
GCGGCGACTGCGGAACGTGGGTCGCCAACCTTTGCGACAAGGAGAGCATC
GGCTGCAAGGACTCAAGTGAGTACCGGACGAGAGTGCCCGCCGGCCTGAG
TCTTCCCATCCTGAAGAGAGATAGATATAAATTATGTGGTCACCTACTGC
TGCTGTAGTCGGAAATTAATGGATAGGTACTGAGTTCAAAAGTTGATTTA
TGTATTGTACGGAGAAAGACGGATGCAGAAATTGAAGTAAAAAAAAGTCG
AGCTTGTGAAAAACTGAAAAAAGATACGAGTAATTATATTCGTTCAATCA
AGGGTCACGAAAAACGCCAATGCAATGCAATGTATGTACGAATACAAGGG
CTCCACATATCAACTACCTGGTACGTACGTAGGATATCATACGTAGACAC
GCGACAAGCATGCGACGATATACCTTCGATCTCGACATATAGACTCAGCC
CACGACTAACCTACTTGTTACGGGGCAAGGTCAGCAAATTGTGTGTTTTG
TTTCTGTACGTTTTTTTTTTTTTCTTCACGGGCGTCCCGAAAAGTAATTT
TTCGACACCTAACTATCTAAAATGGTCAGAATGGAAAATCAATAAGATCA
CTGTGATCGCTGCACGATTTAGAACAAAACAAGTTTTTTTCTGAAATTTT
CCAAAAACCAATCACTAGGTTTTAAAGACCCCCCCCCCTAAGCCTCGGAG
GGGGGGGTCTTTAAAACCAAGTAATTTTTTTTTGGGAAAAATTTTCAAAA
AAAAAGTTGAAAAAACTTGTTTTGTGCTAAATCGTTCAGGGATCACAGTG
CTCGGATTGTTTTTCCATTCTGACCATTTTAGATAGTTAGGTGTCGAAAA
ATTACTTTTCGGGCGCCCTGCTTCACGTAAAAAAAAAAATCGCAAATAAA
ACCCCGCCATTAAAAACGCTCCTGTTTTTTTAATAAACCTGTGGAAAACA
TGTGGCCTTTTTAACACATGACAGTTTCGAAAAAGACCTTCCATCATTCA
TGTACGCCCGCCCCAGAGTGGTCCGGTCCGTGATGATTTTCTCTATCGCC
CAAAACATTAACGCACGCCCTCTCTCTTGCCCCCCCCCCCCCCCACTCAT
CCCCCTATAAATATATTATATATTTATAGGTTGGGTTGGCGTCGGTTGGC
AACGACGCTGTAAAACACGCCACTCGCTGCGTGAGCTAGACAACCAGGGT
GCCGTTTTTTTTTTTTTTTTTTTTTTTTTAATTGGCGGTCACCAAAGCTG
GCGGTCGAGTAGATCATTTGTGCGGGGGAAAACCTTTGCTCCGCACAAGG
GGAATGATCGTATCACGTAGTGTTAATATGGTAAGGCATCCGCGAGGCAG
TACAATAAAACCCATTGCTGTCCCCGGGAAGTGGCCACACCAAAATTTAA
AATTTAACTCATTGAAGCTGTCGTCCATATGCAAGTCCCTCAGAGGCGGT
TCTTAGCAGGATGCAGCTCACCCTCCATGCGACTCGCCCAATACCTCACG
GCGCTTCGGCTTGGTGCAAGCAATGTTTTGCCTGGTTGTTGAAAACCAAC
GTGCTCCGCCCCGGGCCCTTTGTGGGGATGCGAGGGTCTATGGTCTTTGA
CTACGGCCGTGCACGACATGAGTACACCCCCCCCCCCCACCCTTCCCCGC
TCCTCCCGCTCTCACTTTTTTTGTTTTTGTTTTGTTTGTTTCCTGTTTTT
TTTTTTTCCCCATTACCAGTGGGTGACTACGATGTCGAGATCCCGTGCGA
CACTGACTCGGGAGAGTACAAGGTCCGAGTGGGTCGCTTCGAGGACAGCT
CTCTCTTCGGTTGCTCCGGCGCCTTCGAGATCGTCAGCGACGGCTCCAAG
GGCGGGGACTCTTCTTCCGGCGACTCGGACTCGGACTCCGACTCGGACTC
CGACTCCGACTCCGACTCAGATGACAACGGCAACGGAGGGAAGGACTCCT
CGGACGACATGAGCATGTCTTACTCGTTCTAAGACCACACCCAACTATAC
TAAATAGGGCTTCTTTTCTGAAAGTGTTTTGATTTTGAGAGAGTTTTTTT
TCGTCGTTTTATTATTTGAATCTCTGTAATTTGAGCAAATACATTTGTGT
GAATTATAATTTGTCGTACCCACTTCTTTTTGGTTCACAAAAACATTTTT
CGAGAAGAAGTTTTCGTCGTCGCTATATGATCTGAGCCATGTTTGCTCTC
GTATTTAGTTGAGACTTGGACTCCGTATCGTCGGCATGTTTTTCGGGAAG
CGTGGTCCTTCATCTTGTTCCACAAGTGAGCATGATCGGTCGGTCGATGA
TGATGATGTTTTGTTCGTGTTTCTGTCGAGCTTGTGTTTACGATTCGTTC
TCGGCGGGGATATTTTATGGTGTACAATAGTAAAAAATACTTTTTAGCTC
TTCTCTTCTTCGTAGGTAGCTTTCTGAAGTTTTGTGGTCGCGTTATATAT
TTTTCATCTTTCGGCACGCGGCTATTTTTTTTAGCCAATCAACGCTCAGT
TCAGCAGCAGGCAGTACAGCAGGAGCATGCAGGCAGGCAAGCAATGCAGG
CAGGCAGACCCCCCCCCACCCCCCTCGTATATAGAACGGTAAAACAGAGA
AAAAAATCATGCGGGGGAATGGGTAGGATGGGACCAGACGGACCCGAGGG
CAGGGCTCAAAGCCATGTGTAAGAGTTGTTTCGTATCCGGAGGGACGTTT
CTTCTTTTACGTCTCGCCCAGCTCG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1033:37771..44195+

>mRNA_S-latissima_F_contig1033.294.1 ID=mRNA_S-latissima_F_contig1033.294.1|Name=mRNA_S-latissima_F_contig1033.294.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1770bp|location=Sequence derived from alignment at S-latissima_F_contig1033:37771..44195+ (Saccharina latissima SLPER63f female)
ATGGCTCGCACTGCTTTCGTTGCTTTGGCTGTGGGGATGATCGGCGCCGC
TAACGCGCTCAAGGTGGTGACGCCGTCCGAGGGCCTCACCGTCATCGCCG
ACAGATGGCTCGCACTGCTTTCGTTGCTTTGGCTGTGGGGATGATCGGCG
CCGCTAACGCGCTCAAGGTGGTGACGCCGTCCGAGGGCCTCACCGTCATC
GCCGACAGGACGTACACCGTGGAGTGGGAAGGCACCAGCGAAAACAACCG
GTTCGAGATCGACCTGTACTACTGCGGCTCCTACTGCATGGAGGACGTAC
ACCGTGGAGTGGGAAGGCACCAGCGAAAACAACCGGTTCGAGATCGACCT
GTACTACTGCGGCTCCTACTGCATGGAGGACGAGTGCGGTGAGTGGGTGA
CCGCCCTCTGCCCCTACGGCGAGGAGGGCTGCCCCGACAACGAGGGCGAC
TACGACATCATCATGCCCGAGCCCATGTCGGGAACCTCCGGGTCCGGGTA
CAAGGTGCGCGTGGTGGACGTGGACGACGAGGAGGACGGCGACTGCTCCG
ATGACTTCTACCTCATCGGCAGCGACGAGGCGCCCAAGGCGGGCGACTCG
GACGGGCCTTCGCTCAAGGTCACCTCTCCCGCGGAGGGCGACCTGGCGGA
AGCGTGCAACGAGTACACGGTCGAGGACGAGTGCGGTGAGTGGGTGACCG
CCCTCTGCCCCTACGGCGAGGAGGGCTGCCCCGACAACGAGGGCGACTAC
GACATCATCATGCCCGAGCCCATGTCGGGAACCTCCGGGTCCGGGTACAA
GGTGCGCGTGGTGGACGTGGACGACGAGGAGGACGGCGACTGCTCCGATG
ACTTCTACCTCATCGGCAGCGACGAGGCGCCCAAGGCGGGCGACTCGGAC
GGGCCTTCGCTCAAGGTCACCTCTCCCGCGGAGGGCGACCTGGCGGAAGC
GTGCAACGAGTACACGGTCGAGTTCGACTACGACAACGGTGTGGGATCGA
GCGTGGACCGGTTCGCGATCGACCTCTACAAGTCCGAGGGCAGCGGCGAC
TGCGGAACGTGGGTCGCCAACCTTTGCGACAAGGAGAGCATCGGCTGCAA
GGACTCAATTCGACTACGACAACGGTGTGGGATCGAGCGTGGACCGGTTC
GCGATCGACCTCTACAAGTCCGAGGGCAGCGGCGACTGCGGAACGTGGGT
CGCCAACCTTTGCGACAAGGAGAGCATCGGCTGCAAGGACTCAATGGGTG
ACTACGATGTCGAGATCCCGTGCGACACTGACTCGGGAGAGTACAAGGTC
CGAGTGGGTCGCTTCGAGGACAGCTCTCTCTTCGGTTGCTCCGGCGCCTT
CGAGATCGTCAGCGACGGCTCCAAGGGCGGGGACTCTTCTTCCGGCGACT
CGGACTCGGACTCCGACTCGGACTCCGACTCCGACTCCGACTCAGATGAC
AACGGCAACGGAGGGAAGGACTCCTCGGACGACATGAGCATGTCTTACTC
GTTCTAATGGGTGACTACGATGTCGAGATCCCGTGCGACACTGACTCGGG
AGAGTACAAGGTCCGAGTGGGTCGCTTCGAGGACAGCTCTCTCTTCGGTT
GCTCCGGCGCCTTCGAGATCGTCAGCGACGGCTCCAAGGGCGGGGACTCT
TCTTCCGGCGACTCGGACTCGGACTCCGACTCGGACTCCGACTCCGACTC
CGACTCAGATGACAACGGCAACGGAGGGAAGGACTCCTCGGACGACATGA
GCATGTCTTACTCGTTCTAA
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