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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 889 |
| Cds size | 888 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815395.5214841-CDS-S-latissima_F_contig1030:62108..62158 | 1622815395.5214841-CDS-S-latissima_F_contig1030:62108..62158 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 62109..62158 - |
| 1693924858.9956107-CDS-S-latissima_F_contig1030:62108..62158 | 1693924858.9956107-CDS-S-latissima_F_contig1030:62108..62158 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 62109..62158 - |
| 1622815395.5351086-CDS-S-latissima_F_contig1030:67033..67356 | 1622815395.5351086-CDS-S-latissima_F_contig1030:67033..67356 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 67034..67356 - |
| 1693924859.0041487-CDS-S-latissima_F_contig1030:67033..67356 | 1693924859.0041487-CDS-S-latissima_F_contig1030:67033..67356 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 67034..67356 - |
| 1622815395.5469298-CDS-S-latissima_F_contig1030:68310..68825 | 1622815395.5469298-CDS-S-latissima_F_contig1030:68310..68825 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 68311..68825 - |
| 1693924859.0122817-CDS-S-latissima_F_contig1030:68310..68825 | 1693924859.0122817-CDS-S-latissima_F_contig1030:68310..68825 | Saccharina latissima SLPER63f female | CDS | S-latissima_F_contig1030 68311..68825 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815395.5648518-UTR-S-latissima_F_contig1030:68825..68826 | 1622815395.5648518-UTR-S-latissima_F_contig1030:68825..68826 | Saccharina latissima SLPER63f female | UTR | S-latissima_F_contig1030 68826..68826 - |
| 1693924859.0291486-UTR-S-latissima_F_contig1030:68825..68826 | 1693924859.0291486-UTR-S-latissima_F_contig1030:68825..68826 | Saccharina latissima SLPER63f female | UTR | S-latissima_F_contig1030 68826..68826 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1030.281.1 >prot_S-latissima_F_contig1030.281.1 ID=prot_S-latissima_F_contig1030.281.1|Name=mRNA_S-latissima_F_contig1030.281.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=296bp
MIPGGEHGGRWNGNRLHGTLHTGKKWEDVRFMGMRTNPLRTLCRHYGARP
KTLKGVTTSATFKLYTQTGWKGDQLTPGKVDFLNQRTAVILLSGSDYRPP
ADEHDDHPHVGEVEVRSDYRTPHEVIEIDSSDDDDDNDGDNDDDAGSKKR
KIKTELFSRNSVQKLEEGSLTSRGSSTLSAPSSSESQLKDKSRDEREDEQ
RRFEAEEAARKAKREDDRLEREAARAERREIAQAAFAEKKRKDKYEAEER
RRKDDLTAAREQRLHDIEMLQLQLGLQNADRRGSWLQKEEEHGREK back to topmRNA from alignment at S-latissima_F_contig1030:62109..68826- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-latissima_F_contig1030.281.1 ID=mRNA_S-latissima_F_contig1030.281.1|Name=mRNA_S-latissima_F_contig1030.281.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6718bp|location=Sequence derived from alignment at S-latissima_F_contig1030:62109..68826- (Saccharina latissima SLPER63f female)
GATGATTCCGGGCGGAGAACACGGTGGAAGGTGGAATGGGAATCGCCTTC
ACGGAACGCTCCATACGGGCAAGAAATGGGAAGATGTGCGTTTCATGGGC
ATGAGGACAAACCCTCTGCGAACGCTATGCAGGCATTACGGTGCGCGTCC
GAAGACCCTGAAAGGGGTGACTACGAGCGCTACCTTCAAGCTGTACACCC
AGACCGGGTGGAAAGGCGACCAACTGACGCCGGGGAAAGTTGACTTCCTG
AACCAACGCACGGCAGTTATTCTGCTGTCTGGAAGCGACTACCGCCCCCC
CGCTGACGAACACGATGACCACCCCCACGTTGGCGAAGTCGAGGTGCGCA
GCGACTATCGGACTCCCCATGAGGTGATCGAGATCGACAGTAGTGACGAC
GACGACGACAACGACGGCGACAACGACGACGACGCGGGCAGCAAAAAACG
CAAGATCAAGACCGAATTGTTTTCGCGCAACTCCGTCCAGAAACTAGAGG
AAGGTTCCCTGACGAGGTGGGTGGTGGGTGCCTTTTTCGTGGCTATAGGT
TGCATTAGTTTTGAGTTAGGCGTCGTAATTACCGAATCCGGTACTTTTCG
TTGATATCTACATATATATCGGGGGTTTTCAGTGGCGGTGGCAGTGTTGT
GGCAGTGCCAATCGTTGGCTGTATCATACCTGTTATGTACGAGGTGACCT
GAAGCTATTACTTACTTCGTATATGAATAGTTTGACTTTCTCAGCATTAA
TCATTGCTATGTGATTGTGCCTGGTACGTGTATAAATACATACCTACTGT
AGTACGGTACGTGTTTTTTTATCATGGCGCTGGTGTATGCACGGTAGGTG
CATATACAGGAAATTACGAACTACGCTGGGAATGAGATTGGTTATGCCGT
CGTGTTGTGTTGGCGTCCCCTTGCATTGTCGTGTGGTCATGTTGTCGATG
TCAATGGATTAGTGTACTGACTAATCGTTCGCGTGGTAGGTGCACGACTC
GTAATAGGCGTTACGTTTGTTCTTCTTTTTTTTGTTTACCACTTTTGCTT
TCCAGCTCAACTCGTACCAATAGGAGGCCTACGTTTTACCCTCAGCGACA
TTGTGGGCAAGACGTGTGGTCACAGGTGTCTTTCCTTCCCCCCCCGGTAC
TTGCCTTCATTTTTATAACGCATAGGGTTCAGCATTCCCACTATTAATAC
TGTACTCGTCGATCTTCATCGAATTTTGCTGTCTCACGCTCACGCGCTTT
CCGCGACATGAGAAAAAGGCACACAGAGAGTTAACGTTTTGGTTCTTGAA
CCCGCCGGGTATCGAACCCGAGGCCTCATGCCCAGCGGAGGTGATAATTA
ACCTGGTAGTCTATATAGCTACCTGGTAGATTTGTGTAACAGGTACGTAT
ACTCTGTAGATTTATGTAAACAGGTTATTATTGTTTTCATTTTGGTCGCA
TGCATGTTTTCGCGCAGCAGCAGAGGAAGCAGTACCCTGAGCGCGCCATC
GTCATCAGAAAGTCAGCTGAAAGACAAGTCGCGGGATGAACGTGAAGACG
AGCAAAGGCGCTTCGAAGCTGAAGAGGCCGCGAGGAAGGCAAAGAGGGAG
GACGACAGATTGGAGAGGGAGGCTGCCAGAGCGGAGAGAAGGGAGATCGC
TCAAGCCGCTTTTGCAGAGAAAAAGAGGAAGGACAAGTACGAGGCCGAAG
AGCGACGTCGGAAGGACGACCTTACGGCCGCAAGGGAACAACGGCTTCAC
GATATCGAGATGTTGCAGCTTCAATTGGGCCTACAAAATGCCGGTGGGAA
CGCCTGACTTGTCTTGTGTATTTTTTTACGGCGCCCTCCGCTTTAATTTT
GTCGGTCTTCCTATTTTTCGACAGTATCTGTACAAATCCTTCTTTAGTTT
TTATCTTGCGAACTTTATATATACCATGTGGGATATACTATAGTATTACG
TAGTATTTTCCAATGAGCTATCGGCGGCAGACTACTCGCCGTACTGCTGT
CGGTCGGGATTTCTCTTGTTTAATACCGGTATATGCATAAGAGTGTAGGT
TGTTTCAGCAGCCCGTCAGCATTGTCTTGTGTTTGTTTTCGTGTGCTCGC
ATTGAGAGGGACAACATCTGACAATTAACACCTACTCTGAGCAAGGGGCA
AGGCCAGGCAAGGCTTCACCTCATTTATTTTGTCACCAACAACCTTGAGC
GTAATAAGATATAGGCGTTACCTGGTAATATACGAAGTACATGCATTTAT
GTACGTACCGATTTCCTTTCGCTGGTCGTTATGCCTTTCATTTTTTGGGC
TGTATAGACTTCGAAATTGCAACGGTTGGTGGGCCTTTCGTTTTTTTCAG
CTGCACCAAAACGTCATCGTATTTTGCCTTGCGTCACCCCACGTCCGAAT
ACCTCCGACGGGAAACCTTACGCGTATCCTGGTACGCGTATGTGTTGACA
TTTAGTGCAGTGCCCGCCGCTTAGCGCATTTTGTTAATGGGAAATGGTCA
AAGGGTCAAAGGGGGGTGTACCCCCCACTGTCTACATTAGGAGTCCCACT
GTCTATATTAGGAGTAAGAACGGTGCCCCGTCTGGAAAGGGCTGCGTGGT
CAATGGTAAAATGGCTGAGGCAAGCAACAAATGAGTACCCCCCCCCTTTT
TCAGCTAAACGGGGGTGTCGAGAAAACATGCCGCCCGCGGCAGGTGCCGG
CGCGCGCCCCAGCCTGCCTCAAATTAAATTATGATTCGCTGGCAAGTCGC
CTACAGCCGATGCCGAGCACGCGCATCGTTTTCTCTTCTTTTTTCCGGCA
CGTTACTGGGGCTAACGGCACCGTGGCGGAGAAGGGTGAACAAGGGTTCC
CCCTTTAGACTACAATTTAGGGGGGTATGCCCCCCGCAATTCTACTGTAT
TTGACGTAGGACTCCTTTTTGACAAAGATTCCCTCCATTTGACCGAAGAC
ATACCCCTTTTTGACCACTCTCGACAGATTCGAAGTTCCGCCGTGAATCT
CCTTTGGACAGACCCACGCACGGCGGAACATCGGCGATGTTGCGCCGTCG
GTCGGTTCTCGGGTCTGTCCAGAACAGTAAGATTCACGGTGGAACTTCGA
AGATGTCGAGAGTGGTCAAAACGGGGTATGTTTTCGGTCAAATGGGGGGG
AATCCTAGTCAAAAAGGGGTGCTACATATGTACACGTAGTATATTTGCGG
GGGCTTACTAGACCTATTTGAAACTCGAGCTTATTATGCCTTATGTCTTT
CAAAAGGGAAGAGTGAGGCCATTGAATATTTGACACTATAGAGCCACATT
TCCCGCAACGTCTAAAACTCGGCATAGTGGTTTCTTTCAGACAGAAAAAT
CGAGAAAATATTAAACAAGTTGGAATTAGAGTCGGAAATATCTGCAGAAT
ATGAAACAGGAAGAGGATGTATTTCAGGGAGCGGCCAGAAATTCACACAG
AAACTGACTCGAGAACGGAGATGCGTTTTCAAACGGCTAAAAATACGAGT
GCCTCGCCTGGCCTCGCTCACGTCTTCGACGTGTGACTCAGCTTGGAGTA
CGTAATAACACAGAACAACAGCAACACAGCAGGCCTTGCCCTCGAGCCAC
CGGATTACTACTGTAGTCAATGCTTGGAAAATATTCGTGCGGGAGGCATG
GTGAAAGTGGTGCACCGTACGTACGTAGCTATGACAGAGAGGGAACCATG
TTGTCATGAACGTTAGTTCAGAGTGGGCTGCAGACTAAAAACAAGAGCAC
TCGCACGACGAGTGTATCAGCCGCAGTGCAGCGCGCACCGGGCTGGCAGC
CATCGTGTGAGCGCTTGCCTCCCGCCAGTTGACCTTTTTGTTGGGCTAGG
CGTTGGTGTGATGGTCTGTGTGCCGGGCTGTGTGGTGTTTGTTGTTGTTG
TGTGCTGCGGGCTACGGGTGTGTGTTCGATATAGCCGGAGAAAAGTGCAG
GTCGATCATTTGTTTTCCAGTTCCTACGTATGATCCGTAGAGACGTATCG
GTTGAGTCAATGCGGGATACCTCTCACAGGCGCCGACATTGCTGGTGTCG
TAGGGTGTGACGGCTGCGAGTTCATGCTTCACCGAGAAGCGTGTTGTACT
TGGTTTGGGGCTCGGGTTATATGGTGGAGCTGTGCGCTACTGTACTGCTG
CAGAGCTGGTTGGTGCTGTGGTGCTGTGCGATCTTGCTTTGCACTCGCAC
GGTCACAACCCACAACATCAAGATTGTAGGATAAACTGCTGAGAAACTTA
CCACCAAGTAAATCTTATGTACTTGGTCAAAAAAGTGACCAAGTACATAA
TTTGAGAAGAGCCACATCTCACGCTGGTCGTTATGTACAAAATAAGCTCC
TATTTTGGCACCGTCTAAAACTCGATATGTCCTTTTTTTGTACAGATCCA
TAAATAAGCCCCTATTTGGAGTTTCAAATAGCTCTACTGGTACGGCAGCT
GTCCCAGCGACCGCGCTAAAGACTCACCTTATTCTGCCTCCTAGAAGGAA
TTCGTACGATGAACCCGTCGAGACAGCATCTTGAAGTAAGCGGAGCACTC
GATGCCCAAATTCCAGATCGCAAGCGATAAATCCAACCCACGAGGCTCGC
AGACACGGCCACGATGCGTGCATGCGAGCTCAATGACCACACCTATGAGC
GATTGGTTAGCCCATTAGCACATTATCACTTTGGTTGTCCGGTTAATATG
TTTGCACTTTTCTTTCTTCTCATGGGACAGTAGACAGTATTGATAAAACA
CTGAGGTCCCCGGGGCTCTCTAGCATAAGGCATGCACAAAAAACGGGGGG
GGCATTATCATCCAGGGGGCTAACCGCCTACAGAATGAAATGGCCCTCCA
AAACCCACAGAGAAGGCCGCCACGTCTCTGCGCCCGATGGCTCGTGGCCG
CATGCCTCGACCCACCATATTTTACTTGCTCCCATGCCGCCGCCGCCACA
ACATTACCCCCCCCAAAATCATTGTAGTCAAAAGGGGAGATCCTTGTGCA
CCCTCCTCCGCCACGGTGCCGTTATAGCCCCAAGAACCTGCCGGAAAAAG
AAAAGAAAGGTGTGCGTGCTCGGCATGGGCTGCGGGCGTCTTGGCAGCGC
GTCTTAATTGAATTTGAAGCAGGCTGGAGCACGCGCAGGCACCTGCCGCC
GGCGTGTCCCCCCCCCCCCCCGTTTGGCCGCACAAGGGGGACATACCCCG
CTTTGAAATTAACCCTGTATTGAACTTTGAAATGAATGCTTCTTGCCGTC
CCCCCAAAAAACAGAAAAACACATATATAGCCTCATCAGTTTCTTTGTTT
ATTTCTGGTTTGCTTCTTGCTCATGGGCCCATGCTTGTAGTGTCGTACGG
CTACGAATGAGTAATTGTCTGTACATACTCTGTACCGGGTATAATACATG
ATATCATATTAATTTGCACGAATGCATCATCGCGATAAGGGTCGTGTGCA
CTGGTAAATACATGGTATGTATGTACTATTGAATTTAGTGTGGGGGCGGC
AATCTCGCTCAGTTTTGAGTGTTTTTCGATTTTAACTCGACTTTTGAAAA
TCTGTTTTTTCTCAACTTTTTTTCGACTTTTTTCGATTTTTTCGAAAACA
AATATCTTAGTTTGAGTGTGAAAAAAGATCTTGCATTTAGAATGGGTATT
TTTAACTTCAATTTAGTTTTGATTTTTAGTCTTGAATTTAGTGTAGGAAA
ATGTATCTTGAAGTTAGTATCGGGAACAAGAAATACGAACTATCTTGTGG
AGGTCTTTGTACACGCGGTGATTATTTGATCAATTAATTGTCGTAGATTT
GTCGTAGATTTGTCGTAGACTCTCTTGAGCTGCGAGCAAGTGAAGTCCAA
AAAAAAACAATTGTAAGTCAGAGTAAGTCTATAATATGATAATATGGTTC
CCTACTGGGTCTTACTGGTATATACCAGGTATACAACAACGATGCTAAAG
TAGGCTTAACCCATTAAGAACTGGTCCCCCGTTTTTGGGGACAAACTACT
TGGAATTAGTGAGGGATAAGTTTTTCAGTTCTGAACGGGTTAACATACTA
CTGTACGGCGTACTCGTAGCCTGTTTCTTCTGCTGTATCGAGCCGGGTGA
GTAATAAATACAAATACTACCAACCAGGCTACGTACCAGGCACGAGTGCT
GATCCTTACGAGTGCAGCAGCACGCAGCAGTGCACGGCTATATACTACAA
CAGCAGCAGTACTACTACAACTCTGCTGCTGTGAATCATGCCGGAGCATA
GACATAAAAAACGTTACCTACGACTATATATACTCGTACACAAGTACTTA
CTGCTGTGCGAATTGTGTAATACCGGTATGTACATACCTGCCTGTGCTGA
CTGTACGTCGACGGCTGTGCCTGTAAGCTTCTTTCATCATGTATACACGA
GCCTGGTACATATATACCTGGTGACCTGGTATTAATAGTAGTACATGTAC
CCGTGGTATCAAGTCAGGGGGGGTATTACCTGCCGGTACCTGGTACCAAG
TCAAAATATATTCCCAGTGACGATTGTCACCGGGATCTAAATGATACCAC
AGATAAGGTGGTGTGGGTGTATACGTACGATAATGCAATATCGGATGACA
CATAAAAACGCCTCAACGAATAAATGTTGGCACTCCCTGCTTCCTCTGAC
AACGTGTTCATAATGCAGATCGTCGGGGTTCCTGGTTGCAGAAAGAAGAA
GAGCACGGGCGCGAAAAG back to topCoding sequence (CDS) from alignment at S-latissima_F_contig1030:62109..68826- >mRNA_S-latissima_F_contig1030.281.1 ID=mRNA_S-latissima_F_contig1030.281.1|Name=mRNA_S-latissima_F_contig1030.281.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1776bp|location=Sequence derived from alignment at S-latissima_F_contig1030:62109..68826- (Saccharina latissima SLPER63f female)
ATGATTCCGGGCGGAGAACACGGTGGAAGGTGGAATGGGAATCGCCTTCA
CGGAACGCTCCATACGGGCAAGAAATGGGAAGATGTGCGTTTCATGGGCA
TGAGGACAAACCCTCTGCGAACGCTATGCAGGCATTACGGTGCGCGTCCG
AAGACCCTGAAAGGGGTGACTACGAGCGCTACCTTCAAGCTGTACACCCA
GACCGGGTGGAAAGGCGACCAACTGACGCCGGGGAAAGTTGACTTCCTGA
ACCAACGCACGGCAGTTATTCTGCTGTCTGGAAGCGACTACCGCCCCCCC
GCTGACGAACACGATGACCACCCCCACGTTGGCGAAGTCGAGGTGCGCAG
CGACTATCGGACTCCCCATGAGGTGATCGAGATCGACAGTAGTGACGACG
ACGACGACAACGACGGCGACAACGACGACGACGCGGGCAGCAAAAAACGC
AAGATCAAGACCGAATTGTTTTCGCGCAACTCCGTCCAGAAACTAGAGGA
AGGTTCCCTGACGAGATGATTCCGGGCGGAGAACACGGTGGAAGGTGGAA
TGGGAATCGCCTTCACGGAACGCTCCATACGGGCAAGAAATGGGAAGATG
TGCGTTTCATGGGCATGAGGACAAACCCTCTGCGAACGCTATGCAGGCAT
TACGGTGCGCGTCCGAAGACCCTGAAAGGGGTGACTACGAGCGCTACCTT
CAAGCTGTACACCCAGACCGGGTGGAAAGGCGACCAACTGACGCCGGGGA
AAGTTGACTTCCTGAACCAACGCACGGCAGTTATTCTGCTGTCTGGAAGC
GACTACCGCCCCCCCGCTGACGAACACGATGACCACCCCCACGTTGGCGA
AGTCGAGGTGCGCAGCGACTATCGGACTCCCCATGAGGTGATCGAGATCG
ACAGTAGTGACGACGACGACGACAACGACGGCGACAACGACGACGACGCG
GGCAGCAAAAAACGCAAGATCAAGACCGAATTGTTTTCGCGCAACTCCGT
CCAGAAACTAGAGGAAGGTTCCCTGACGAGCAGAGGAAGCAGTACCCTGA
GCGCGCCATCGTCATCAGAAAGTCAGCTGAAAGACAAGTCGCGGGATGAA
CGTGAAGACGAGCAAAGGCGCTTCGAAGCTGAAGAGGCCGCGAGGAAGGC
AAAGAGGGAGGACGACAGATTGGAGAGGGAGGCTGCCAGAGCGGAGAGAA
GGGAGATCGCTCAAGCCGCTTTTGCAGAGAAAAAGAGGAAGGACAAGTAC
GAGGCCGAAGAGCGACGTCGGAAGGACGACCTTACGGCCGCAAGGGAACA
ACGGCTTCACGATATCGAGATGTTGCAGCTTCAATTGGGCCTACAAAATG
CCGCAGAGGAAGCAGTACCCTGAGCGCGCCATCGTCATCAGAAAGTCAGC
TGAAAGACAAGTCGCGGGATGAACGTGAAGACGAGCAAAGGCGCTTCGAA
GCTGAAGAGGCCGCGAGGAAGGCAAAGAGGGAGGACGACAGATTGGAGAG
GGAGGCTGCCAGAGCGGAGAGAAGGGAGATCGCTCAAGCCGCTTTTGCAG
AGAAAAAGAGGAAGGACAAGTACGAGGCCGAAGAGCGACGTCGGAAGGAC
GACCTTACGGCCGCAAGGGAACAACGGCTTCACGATATCGAGATGTTGCA
GCTTCAATTGGGCCTACAAAATGCCGATCGTCGGGGTTCCTGGTTGCAGA
AAGAAGAAGAGCACGGGCGCGAAAAGATCGTCGGGGTTCCTGGTTGCAGA
AAGAAGAAGAGCACGGGCGCGAAAAG back to top
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