mRNA_S-latissima_F_contig1030.280.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1030.280.1
Unique NamemRNA_S-latissima_F_contig1030.280.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A6H5K6A8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A8_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 9.340e-131
Identity = 202/311 (64.95%), Postives = 235/311 (75.56%), Query Frame = 3 
Query:   60 VGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQ---TSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSED--DTGGAASPRT-----AIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEWTPT 962
            +GC C RC+ AR NP  KD +V CL + DE+EGKVFL+DATPDL  QLW IQH +RKG     PLELGGILLTHAH GHYTGLLQLGKE AD R VPVFCTP MASFLR N+PW QLT+RGNI+I+EL    T  +     V+LT S+S LPV VPHRAELSDTVAYV+S++  + D  DT  + +P+      A    G +   K+++CPDTDGWS W RSI  WC EVDVALLDATF+G+ ELK RDMSEVSHP+A +TM +LAGCKAEVVL+HLNHTNPL   DSPERAQA AAG+KVG+FGMEW PT
Sbjct:    2 IGCGCHRCEYARRNPDFKDGLVVCLALADETEGKVFLIDATPDLREQLWYIQHPKRKGDSGR-PLELGGILLTHAHIGHYTGLLQLGKEEADMRGVPVFCTPSMASFLRSNQPWRQLTDRGNIAIQELDMDATDNSKDAVPVQLTRSLSVLPVPVPHRAELSDTVAYVVSVASRAVDASDTAVSHAPKLDLGPPAEVSSGENDTMKLLYCPDTDGWSDWKRSISSWCNEVDVALLDATFHGKGELKGRDMSEVSHPIATETMAQLAGCKAEVVLIHLNHTNPLLTADSPERAQAVAAGYKVGSFGMEWAPT 311
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A835Z5U1_9STRA (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U1_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.890e-85
Identity = 152/318 (47.80%), Postives = 193/318 (60.69%), Query Frame = 3 
Query:   15 KVVLLGCAQDAGVPQVGCACQRCDSARS-NPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHT--ERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWS-GWTRSIRDWCEEVDVALLDATFYGRAELK-DRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            + ++LGCAQDAG+P +GC+C RC  AR+   A KD MV CLG+VD+ + K FLVDATPD+G+QLW +Q       G   V    LGGILLTHAH GHY+GLLQLGKE   A  VPVFCT  MA+FL +N PW+ L E  +I I EL    T G A  RL   +   P+ VPHR E+SDTVA + S    S                       K+++CPDT+GW  GW + IR WC+EV+VA++D TFY   EL   R ++++ HPL  DT+  L+GC A+VV  HLNHTNP+    S +R     AG  V  FGM+W
Sbjct:   12 RAIVLGCAQDAGIPSIGCSCSRCSHARALGSAYKDGMVACLGLVDDGDRKAFLVDATPDIGSQLWELQQAIPANDGPGNV----LGGILLTHAHMGHYSGLLQLGKEALGAAQVPVFCTASMAAFLHENLPWSLLVEGNSIVITEL----TPGSA-YRLCTGLCVTPISVPHRDEISDTVAMLFSCGDQS-----------------------KLLYCPDTNGWGEGWGKGIRAWCDEVEVAVVDGTFYSADELPAGRSIADIPHPLIPDTVARLSGCSAQVVFTHLNHTNPVATAASEQRRSVTDAGMSVAEFGMQW 297
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: D7FQF9_ECTSI (Coenzyme PQQ synthesis protein B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF9_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 6.860e-84
Identity = 135/218 (61.93%), Postives = 163/218 (74.77%), Query Frame = 3 
Query:  339 RNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQ---TSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIP-------RIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEWTPT 962
            R VPVFCTP MASFLR N+PW QLT+RGNI+I+EL    T  +     V+LT S+S LPV VPHRAELSDT+AYV+S++  + D +G A S  + +          G +   K+++CPDTDGWS W R+I  WC EVDVALLDATF+G+ ELK RDMSEVSHP+A +TM +LAGCKAEVVL+HLNHTNPL   DSPERAQA AAG+KVG+FGMEW PT
Sbjct:    2 RGVPVFCTPSMASFLRSNQPWRQLTDRGNITIQELDIDATDNSKDAVPVQLTRSLSVLPVPVPHRAELSDTIAYVVSVASRAVDASGTAVSHTSKLDLGPPAEVSSGENDTMKLLYCPDTDGWSDWKRNISSWCNEVDVALLDATFHGKGELKGRDMSEVSHPIATETMAQLAGCKAEVVLIHLNHTNPLLTADSPERAQAVAAGYKVGSFGMEWAPT 219
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A524ARI4_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524ARI4_9CHLR)

HSP 1 Score: 249 bits (635), Expect = 5.670e-72
Identity = 138/316 (43.67%), Postives = 178/316 (56.33%), Query Frame = 3 
Query:    6 MPAKVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            M  +  LLG AQD GVP  GC C  C  AR +PA +   V CLG+VD +  + +L+DATPD   QL ++ H      P      L GI+LTHAH GHYTGL+ LG+E    R++PV+ T ++ASFL D+ PW+QL   GNI +R L T GT      +L+P +   PVLVPHR ELSDT+A V+                           A ++ +CPD D W  W  ++RD+   +DVALLDATF+   EL  RD+SE+ HP A DT + LA    +V L+HLNHTNPL +   PER    A    VG FG  W
Sbjct:    1 MSVEANLLGIAQDGGVPHAGCDCANCSRARVDPAFRQ-FVACLGLVDRANRQSWLIDATPDFREQLHAL-HNLAPDCP------LAGIVLTHAHMGHYTGLIHLGREAMCTRDLPVYATLRLASFLHDSAPWSQLVALGNIELR-LLTPGTD----TQLSPDLHLTPVLVPHRDELSDTLALVVH------------------------GPARRLFYCPDIDAWDKWEHNLRDFVAGMDVALLDATFFSHDELPGRDLSEIPHPSAIDTAERLAKVDCDVRLIHLNHTNPL-LAPGPERDWLAAQEISVGAFGARW 278
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A2E9PTP6_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E9PTP6_9CHLR)

HSP 1 Score: 244 bits (622), Expect = 4.330e-70
Identity = 136/313 (43.45%), Postives = 171/313 (54.63%), Query Frame = 3 
Query:   15 KVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            + +LLG AQDAGVPQ GC C  C  AR +PA +     CLG+VD   G+ +LVDATPD   Q    QH   + A       L GILLTHAH GHY GLL +G E  +A  +PV+ + +MA FLR N PW+QL E  NI +R L    TSG  SV L+P++S +PV VPHR E SDT A+V                           +  ++ +CPD D W  W   ++D+   +DV  +DATFY   EL  RDM  + HPL  DT + L G   +V LVHLNHT+PLF    PER      G +VG  G  W
Sbjct:    7 EAILLGTAQDAGVPQAGCDCSNCSRARRDPAQRR-FTACLGLVDREAGQSWLVDATPDFREQ----QHILHQFAA---DCALAGILLTHAHIGHYPGLLHIGHEAMNAHRLPVYASERMAEFLRGNAPWSQLVEYENIELRSL----TSGVESV-LSPNLSVVPVSVPHRQEFSDTFAFVAC------------------------GAQRRLFYCPDIDDWELWEHDLQDFAIGMDVVFVDATFYNANELPQRDMDRIGHPLVMDTAERLMGLDCQVRLVHLNHTSPLFT-PGPERELLREYGIEVGRRGEHW 281
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A7V3GUU5_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3GUU5_9CHLR)

HSP 1 Score: 236 bits (603), Expect = 1.780e-67
Identity = 136/318 (42.77%), Postives = 185/318 (58.18%), Query Frame = 3 
Query:    6 MPAKVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEV--DVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            M    +LLG AQD G+PQ GC C  C +AR+NPA +  +V+ LG+VDE+ G+ +L+DATPD  AQ  ++  T R  AP      L G+LLTHAH GHY GLL LG E  +AR +P++ TP+MA+FLR + PW+ L   G++++ E+          V L+P +   PV VPHR E SDTVA+++              SP           +  + +CPD D W  +   +R W + V  D+ALLDATF+   EL  RD++++ HPLA+DT   LA    EV  +HLNHTNPL+    PERA  EA G +VG  G  W
Sbjct:    1 MSVSAILLGVAQDGGLPQPGCHCPNCAAARANPALRQRVVS-LGLVDEAAGRAWLIDATPDFPAQYDAL--TAR--AP------LAGVLLTHAHMGHYPGLLWLGPEAMNARGLPLYATPRMAAFLRAHAPWSGLAAGGHVTLVEIAPG-----QEVALSPRLRVTPVAVPHRDEYSDTVAWLVR-------------SP-----------SRTLFYCPDIDHWRAFQPDLRAWLQRVGVDIALLDATFFSPDELPGRDLTQIPHPLARDTASLLADGDIEVAFIHLNHTNPLWR-PGPERAWIEAQGLRVGAQGDVW 277
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A2E5HWR5_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E5HWR5_9CHLR)

HSP 1 Score: 229 bits (584), Expect = 1.330e-64
Identity = 131/318 (41.19%), Postives = 172/318 (54.09%), Query Frame = 3 
Query:   15 KVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCM----VTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEWT 956
            K++LLG AQD GVP VGC C  C  AR+     DC     VT +GIVD + GK +LVD TPD G Q+  +       AP     +L G+L+THAH GHY GL QLG E  +A  +PV+ +  M+ FL  N PW QL E+ NI +  +++ GT+     +L+P++S  PVLVPHR + +DT A++I                            + + +CPD D W  W   +  +  + +VALLD TFY   EL DRDMS VSHPL  DT+K L     +V  VHLNHTNPL   D   R   +  G KVG  G  W+
Sbjct:   11 KIILLGTAQDGGVPHVGCLCNNCQIART-----DCTLQQYVTSIGIVDFTAGKSWLVDCTPDFGHQMDVLFQF----AP---DCDLSGLLITHAHIGHYLGLAQLGAEVMNANLMPVYVSESMSEFLSCNAPWRQLVEQRNIDVVIIESDGTT-----KLSPAISIKPVLVPHRKDFTDTFAFIIH------------------------GIKHSMFYCPDIDNWDDWEYDLSVFINKFNVALLDGTFYEDGELPDRDMSAVSHPLVSDTLKRLGDTNCDVRFVHLNHTNPLLRKDYAYRMYKKY-GVKVGNIGDSWS 286
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A7C3B5U5_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7C3B5U5_9CHLR)

HSP 1 Score: 228 bits (581), Expect = 2.330e-64
Identity = 128/316 (40.51%), Postives = 167/316 (52.85%), Query Frame = 3 
Query:    6 MPAKVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            M  + +LLG AQD GVP  GC C RC  A  +P+ +   V CLG+VD    + +L+DATP    QL    HT R+ AP      L GILLTHAH GHY GL+ LG+E      +PV+ T +MA FLRDN PW+ L    NI +R L            L+P +   P  VPHR ELSDT+A+V+                           + ++ +CPD D W  W   +R++   +D+ALLDATF+   EL   DM  V HP   +T++ LAG   +V L+HLNHTNPL +    ER   E  GF+VG  G  W
Sbjct:    1 MSVEAILLGVAQDGGVPHTGCDCARCRRAWEDPSFRQWAV-CLGLVDRDRHQSWLIDATPHFPEQL----HTLREFAP---DCPLAGILLTHAHIGHYAGLIHLGREVMGVEEMPVYATSRMADFLRDNGPWSLLVTLRNIDLRILTPE-----VETALSPDLHVTPYCVPHRDELSDTIAFVVR------------------------GPSRQLFYCPDIDSWGRWNYDLREFLTGIDIALLDATFFSADELPGADMRVVPHPPVVETVERLAGIDCDVWLIHLNHTNPL-LGPGRERDWVEERGFRVGAAGERW 278
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A098SAZ3_9BACT (Pyrroloquinoline quinone biosynthesis protein PqqB n=2 Tax=Phaeodactylibacter xiamenensis TaxID=1524460 RepID=A0A098SAZ3_9BACT)

HSP 1 Score: 229 bits (583), Expect = 3.370e-64
Identity = 131/317 (41.32%), Postives = 173/317 (54.57%), Query Frame = 3 
Query:   15 KVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELA----GCKAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGMEW 953
            +  +LG AQDAG PQ  C    C  A  NPA +  MV+CL I D   GK +L+DATPD   QL  I+ +          LELGGILLTHAH GHYTGL+ LG+E   A+ VPV+  P+M SFLR+N PW+QL + GNI +R LQ        +V L+P+++  P  VPHR E S+TV +  S+ G +                      +++MF PD D W  W   I    E  D+A LDATFY  AEL  RDMSE+ HP  Q+++K  A      +  +  +H NH+NPL    S  + + E AGF +   GM +
Sbjct:   34 EATVLGIAQDAGYPQANCQKACCRPAWDNPAKRR-MVSCLAISDRQAGKAWLLDATPDFPEQLQFIRDS--------LGLELGGILLTHAHIGHYTGLMYLGREVMGAQGVPVYVMPRMDSFLRENGPWSQLADLGNIELRTLQAG-----QAVALSPNLTITPFPVPHRDEFSETVGF--SVQGPN----------------------HQLMFLPDIDKWGRWEVPIDSMIEVHDLAFLDATFYSGAELPGRDMSEIPHPFVQESLKRFAPLPDSIRRRIYFIHFNHSNPLLQAGSAAQREVEQAGFGISREGMRF 312
[Close]
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Match: A0A1Q3T670_9SPHI (Pyrroloquinoline quinone biosynthesis protein PqqB n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1Q3T670_9SPHI)

HSP 1 Score: 228 bits (581), Expect = 8.920e-64
Identity = 125/314 (39.81%), Postives = 172/314 (54.78%), Query Frame = 3 
Query:   18 VVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESEGKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTGLLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSGTSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASPRTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGRAELKDRDMSEVSHPLAQDTMKELAGC----KAEVVLVHLNHTNPLFVVDSPERAQAEAAGFKVGTFGM 947
            + +LG  QDAG PQ GC  + C +A    A++  +VTCL +VD    + +L +ATPD+  Q  S+Q      A  +      GI  THAH GHY GLLQLG+E   AR+VPV+  P+M SFLR N PW+QL E  NI +  L+       +S+ L+PS+   P++VPHR E S+TV ++I   G                         K++F PD D W  W R+I +   +VD+A LD TFY   EL  RDM EV HP  +++M+  AG     ++++V +H NHTNPL    S E+ +  A GFKV   GM
Sbjct:   42 IAVLGIMQDAGYPQAGCD-KECCNAYWKGAEEKKLVTCLALVDRKANQYWLFEATPDITTQFHSVQQYLSSQAGHI----PAGIFTTHAHIGHYAGLLQLGREAMGARSVPVWTMPRMDSFLRYNAPWSQLVELKNIQLNALKED-----SSITLSPSLKVKPLVVPHRDEFSETVGFIIESVGK------------------------KILFIPDIDKWEKWDRNINEEVSKVDIAFLDGTFYKNGELPGRDMKEVPHPFVEESMQLFAGLPDTVRSKIVFIHFNHTNPLRKKGSSEKEEVSAKGFKVAEEGM 321
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1030.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6A8_9PHAE9.340e-13164.95Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z5U1_9STRA1.890e-8547.80Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
D7FQF9_ECTSI6.860e-8461.93Coenzyme PQQ synthesis protein B n=1 Tax=Ectocarpu... [more]
A0A524ARI4_9CHLR5.670e-7243.67Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A2E9PTP6_9CHLR4.330e-7043.45Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A7V3GUU5_9CHLR1.780e-6742.77Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A2E5HWR5_9CHLR1.330e-6441.19Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A7C3B5U5_9CHLR2.330e-6440.51Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A098SAZ3_9BACT3.370e-6441.32Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A1Q3T670_9SPHI8.920e-6439.81Pyrroloquinoline quinone biosynthesis protein PqqB... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1030contigS-latissima_F_contig1030:34454..47797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score212.6
Seed ortholog evalue2.7e-52
Seed eggNOG ortholog313596.RB2501_06945
KEGG rclassRC00296
KEGG koko:K06136,ko:K06167
KEGG ReactionR10205
KEGG Pathwayko00440,map00440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pyrroloquinoline quinone biosynthesis protein PqqB
EggNOG OGs1HYHP@117743,4NGB4@976,COG1235@1,COG1235@2
EC3.1.4.55
COG Functional cat.S
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons8
Model size2872
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1030.280.1prot_S-latissima_F_contig1030.280.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1030 34459..45893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.9929175-UTR-S-latissima_F_contig1030:34453..344581622815395.9929175-UTR-S-latissima_F_contig1030:34453..34458Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1030 34454..34458 +
1693924859.2368023-UTR-S-latissima_F_contig1030:34453..344581693924859.2368023-UTR-S-latissima_F_contig1030:34453..34458Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1030 34454..34458 +
1622815396.0957706-UTR-S-latissima_F_contig1030:45893..477971622815396.0957706-UTR-S-latissima_F_contig1030:45893..47797Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1030 45894..47797 +
1693924859.3283665-UTR-S-latissima_F_contig1030:45893..477971693924859.3283665-UTR-S-latissima_F_contig1030:45893..47797Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1030 45894..47797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.0070033-CDS-S-latissima_F_contig1030:34458..345121622815396.0070033-CDS-S-latissima_F_contig1030:34458..34512Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 34459..34512 +
1693924859.2473786-CDS-S-latissima_F_contig1030:34458..345121693924859.2473786-CDS-S-latissima_F_contig1030:34458..34512Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 34459..34512 +
1622815396.018626-CDS-S-latissima_F_contig1030:35109..352111622815396.018626-CDS-S-latissima_F_contig1030:35109..35211Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 35110..35211 +
1693924859.2564332-CDS-S-latissima_F_contig1030:35109..352111693924859.2564332-CDS-S-latissima_F_contig1030:35109..35211Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 35110..35211 +
1622815396.030969-CDS-S-latissima_F_contig1030:35756..358411622815396.030969-CDS-S-latissima_F_contig1030:35756..35841Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 35757..35841 +
1693924859.270025-CDS-S-latissima_F_contig1030:35756..358411693924859.270025-CDS-S-latissima_F_contig1030:35756..35841Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 35757..35841 +
1622815396.0435724-CDS-S-latissima_F_contig1030:42132..422361622815396.0435724-CDS-S-latissima_F_contig1030:42132..42236Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 42133..42236 +
1693924859.280768-CDS-S-latissima_F_contig1030:42132..422361693924859.280768-CDS-S-latissima_F_contig1030:42132..42236Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 42133..42236 +
1622815396.0550058-CDS-S-latissima_F_contig1030:43531..436401622815396.0550058-CDS-S-latissima_F_contig1030:43531..43640Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 43532..43640 +
1693924859.2885528-CDS-S-latissima_F_contig1030:43531..436401693924859.2885528-CDS-S-latissima_F_contig1030:43531..43640Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 43532..43640 +
1622815396.0667455-CDS-S-latissima_F_contig1030:43818..441441622815396.0667455-CDS-S-latissima_F_contig1030:43818..44144Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 43819..44144 +
1693924859.2974405-CDS-S-latissima_F_contig1030:43818..441441693924859.2974405-CDS-S-latissima_F_contig1030:43818..44144Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 43819..44144 +
1622815396.0764697-CDS-S-latissima_F_contig1030:44742..448861622815396.0764697-CDS-S-latissima_F_contig1030:44742..44886Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 44743..44886 +
1693924859.3086753-CDS-S-latissima_F_contig1030:44742..448861693924859.3086753-CDS-S-latissima_F_contig1030:44742..44886Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 44743..44886 +
1622815396.0868404-CDS-S-latissima_F_contig1030:45854..458931622815396.0868404-CDS-S-latissima_F_contig1030:45854..45893Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 45855..45893 +
1693924859.3186407-CDS-S-latissima_F_contig1030:45854..458931693924859.3186407-CDS-S-latissima_F_contig1030:45854..45893Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1030 45855..45893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1030.280.1

>prot_S-latissima_F_contig1030.280.1 ID=prot_S-latissima_F_contig1030.280.1|Name=mRNA_S-latissima_F_contig1030.280.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=321bp
MPAKVVLLGCAQDAGVPQVGCACQRCDSARSNPADKDCMVTCLGIVDESE
GKVFLVDATPDLGAQLWSIQHTERKGAPAVWPLELGGILLTHAHTGHYTG
LLQLGKEGADARNVPVFCTPKMASFLRDNEPWAQLTERGNISIRELQTSG
TSGFASVRLTPSVSFLPVLVPHRAELSDTVAYVISMSGSSEDDTGGAASP
RTAIPRIGGDSANKVMFCPDTDGWSGWTRSIRDWCEEVDVALLDATFYGR
AELKDRDMSEVSHPLAQDTMKELAGCKAEVVLVHLNHTNPLFVVDSPERA
QAEAAGFKVGTFGMEWTPTA*
back to top

mRNA from alignment at S-latissima_F_contig1030:34454..47797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1030.280.1 ID=mRNA_S-latissima_F_contig1030.280.1|Name=mRNA_S-latissima_F_contig1030.280.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=13344bp|location=Sequence derived from alignment at S-latissima_F_contig1030:34454..47797+ (Saccharina latissima SLPER63f female)
AGAAAATGCCGGCGAAGGTCGTCCTACTCGGCTGTGCTCAAGATGCGGGG
GTGCCCCAAGTGAGTTGCCTTCCCTGTGCTATGGAACGGCCAACATCCTT
ACCGAGAACGATACGAGTAATACGTAGTGCGGCCTTGTAGAGAGGAATTT
GTATCTAAGTGGATGTCCATGTTTTTCTTTTAATCACGTAATTATACCAA
TACAGCAGTATTGTACTAATTAGTCATAAGTAAATTATACCGGTATACCA
GGTAGACTGTATTACAACTACTGCTTGATTGTGTACGTGCAGATTTGACA
GTAAAAATTGTTCGTAGGCGTATTGACTCCGTGCTACGATATACTTCGCA
TGCGTACGTAGTGGCTCCGTGCTCGGACTGATTTTGGACCGAAATGGTAT
TTGTGTAATTTGGATAAACCCGCCCTGTTAACCCTCTGATACACATGCAG
GGGAGTCACAGATCTACGTTATGCGTGTAACTACGACCTGTACTTAGGCG
AGTGCGGTCGCGCCTCCTTTGTGTTTTGTCTACAATGTGCTACTTAAGAA
ATATCCCCACGTACTTCGTACGATATGTTCGTGATTATTTGTGTCTGCGC
ACCTTGCACCTTCACCTTACACCTTGCCCCTTTCAACTTGCAAATTCACC
TTTTAGGTAGGGTGCGCTTGCCAACGGTGCGACAGCGCTCGATCCAACCC
GGCCGACAAAGACTGCATGGTCACGTGCTTGGGTATCGTCGACGAAAGCG
AGGGGAAGGTAATCGAGGACGATGAGCACCCCTTTTTTTGTTCGTACGGA
GTTATTTTTCTACATTTTACAGCCCACCCAACGACCAGCAAGATTCACGT
TAAACGTTGGTGGCACGACGGCTGCTTGCTAAGTTTGTATTCGCGGGTTA
GTTGAGGACACTACGTACAACAGCAGGAGTAATCCGCACAGGACACTTAC
CATGCCAACGTATTCCAGGTACCTGCCTGCATAGTAACATCCAGGCTGAG
ATTTTACAGGGAAATAGGCAATCCAGACGCGGGTAAGCGAACTTAATGTG
GAACAAACCCTTTGTCAAGTAAGTAATACCTGGTACAGCCTGTCCAACAG
TCGCGGAAGCCACCGGCATTGGTCATGCAACAATTTTGGCTCAGACGCGA
CAGCTGCACCACTCAGCACAATTGATGACGTCTCCAGAGAACCTCTAACC
GGGGTTAGACCATGGGTTGCGTTGTTTTTTTGCGACACCTTGATGAGACG
AGAACACCGAACAAGAGACACCGCCGTCTTCCAATTTTGCCCGACTCGCG
CAGGTGTTCCTCGTGGACGCTACCCCCGACCTCGGTGCGCAGCTGTGGTC
CATACAGCACACGGAACGAAAAGGTGCGCCCGCTGTATGTATTATGTTCT
GTGTTTTTGTTTTGTTTTGTGTTGTTGTTGTTGGGGTTTGTTTTGTCTTA
GTTTGTATTTTTTATCTTGTTCTCGTTTGTTTTGTTTGTTTTGTTTTCTT
TCGTTTTCCAGCCGCTATCCGGCAACGTAACAGGCCTTCGAGTTTAGGGT
GTGACTACTGTAGCAGCGAGCAAAACAAAAGTTAGGTGTGTCGGTGCGAA
TTGACGAACGCAACATCGGCTATGGCGAAAGTAAGACCAAGTAGGCGTAT
GGCACTGAAACAACGCCGCGGGAGGGACGATAATATGATTGCTTCGGCCA
GCGGGTGGGTCAGATCGATTCACAGCACAGCACACAATCCAAGGTGACGA
CTAGTTTTCGTGCTGATCACCTAGTAATTTGCCGTTGGTTGCTCGCCCTC
GGGGTGCCAGCAAGTGGTTCCCTTCGGGCTTGCTGTTGGCGCGCGCTTCA
ACGTGTCGACGGTGTCACCTGCATATAGTATATGTCCAGGCTTTTGGGTT
GGTTTCGTTGATTGCCCCCCCCCCACCCCTTCTCCCCCCCCTCCTTTCTG
CTAGACAACTATGGGTTGGCGTCGAGTGGCAACGACGCTGTAAAACAAGC
CACCAGACTCTAGACATGAAACTACTGAGCTAACCAGTTTTTTTTCCTCA
TATCAAACACAAACCGACATAGACATGAATTACTAAACTAACCAGTTTTT
TTTTTTCCGCATATCAAAACACAAACCGGATATAGACATGAAATTACTAA
ACTAACCAGTTTTTTTTCCCCTCATATCAAACACAAACCGGACATAGACA
AGAATTACTCAACTAACCAGTTTTTTTTCCCCATACAAAACACAAACCAG
ACATAGACATGAACTACTCAACTAACCAGTTTTTTTTTCTCATATCAAAA
CCAAACCGGACATAGACATGAATTACTAAACTAACCAGTTTTTTTTCCAC
ATATCAAAACCCAACCACACACTTAGTGTATATCTCTCCCATATCGTACC
AGGTAATACACAGCAAAACGTTGAACTAGACAAAAAACCTAGCATGAAGA
GGACCACCTTACATCACACACATAGATACAGCAAGGTCACCCCGACATGT
TCAATTCACATGAAGGTTGGGGTCTCGTGGTGAGATACCCGAAAAATTTA
CCGATTTCCATTGGGCGTTGGAAGTCTGGTCCGACATCGTCCTAAACCCT
GAAACTTGGTGCACATACCATGCGCCAAATGAAGGGAGGGTGGATGATGC
ATGGCATTAAGTCAGGCCAATTGAACTCATGAAACAAACGCCTTGCCACT
GACCGACCACACGACCAAAGAGACGGAGCACCAAGCGTACGTAGATATCT
TGATATCTTGAAGGATAGAGCCGTACAAAGTGTAGGGGGATCGTTGGCCA
AGCTTTCGGCAGCGAAGGTCACTCTGGGAGCATTAGTGGGGTAGCTACCC
ATGTGAAACGTACTACGATGGAGAAAGCGACGTACGGGCACCCCGATGTG
TGAGTAAGACTTTGTGTTATGCAAGCCGTCCTTGAACCTTGCACGGTAAA
AATGACCTCCCTGGAGGAAGTAACCCAGTACAGCAGCGGGGCAAGAGATA
GAAGATACGGTCGTGGGACGCCAGGATGTTACCATGCAGATCGCCTGACA
CAACGTGGGTACTTGTGTTAGGGTGTTGAACTTGGCTCCAGGCTACGAGC
CCGTGTTGGAGACACTATTTAGTGTGGTGCGCCGGCAAAAGAACTGAAGA
CACCAGACCCTCACGAGTACTAGGATTGGGAAGTCCCAGTAACTTGAACA
TTTCCCACTACAAATATGAACAAAAACAGCTGGAGATAGTCTCGGAAGAG
TTTGGGAGAAAGACGGTGAGGCAGGTGGGTGGAGTAAGAAAGATTGGAAG
GTAAAGTACTAGTATTGCTGTATTCGGAGTTCCTAGCGACATGACAAGAA
TAGAGTTCAAGAGGAAGGCGACGAAGTAGGACTATACTGCTTTGCATTAG
GACAATAGAAAGGGGAGGGAGAGCATTTTCGAATCACCTTAAACCGAAAG
CGAGCAGGAGTGGCAGAGGTTAGAGACAGAAAAGTGTCGGCATGGGTTAG
AAGACTAGGATGGAGGGTATGTTATGCTAATGGATAGAAAATCTAAGACC
TAGTCCTAGGGTGAACGGAGGTAAGGGTAGCAGGAACCGTAAGTGGCCCA
AAGGAAGGGGAGAGAAACACAGCGGCGTAGAGCAAGAAGAAAAAACCCCG
AAAGGGAAACTAAGAAAGCTCAAAGAAGAGAACACAGAAGTACAACGAAG
GAAAAAAACAAAGACAAGAGTCGAGCGAACAGTGAAACAGAAGAACTGAA
ATAGATCATGGAACGTTGTGGATTCGCCACGGAAGAGCGCAAGAGGATAG
AATAGCCGAACAGGTAAGTGAGCGCGCCCTAGACATAGTGGGAGTTAAAG
AGTCGTGGAAAAGAGGGGGGAAATAGGATCACAATTGGAGAGTACGCATG
GATAGGGAAAAAGAAAGGGGCAGAACAAGAAGAATAGGGGGGCGGGGGAG
TAGGTTCCTAGTCAAAGAATACCTGTGTGACATAATAGAATGATCAAAGA
CACGAATTCGACGAAAGCATCTGGATAAGATCCAGGGAGAGGGGAGCGAA
AGATTATTTCTTAGGAAACATCTATTGCCCCCGAGTCGAAGAGTACGGTA
AAAGATATACAGAAGAAGTTTCGGAGAAATAGCATTAGATGTACAAAATA
TAAAAGACAAGGAGAAGTAGTACTATCGGAGATTTTAACTCAAAATTGGG
AAGGCAAGAAACCCGAACGAAAAACATTGGACGTATGGGAAGAAACAAAA
ATAAAACGGGGAAGATGCTGAATTTTCTTAAAAACAATGAGATGAAGACT
CTGAACGGTAAGTAAATAAGCCAGAGCCAGAATGGACTAACAGTGCATAC
AAAAGGGAGAAAGCTCCGTTCTTGACTTTTATGGTAAAAAATGAAGTAGT
ACGGAAAACGGAAGTACAGTATGCGGGGCGGACGTAGGAACACAGATCAC
TGCTAATATGGACAGACAGCCAGCAGACGAGAGTTATCAAAATAGGCGGG
GTAGGAAATTGTACAGATGGGAATAGATAAACCTAGAATAAGGAAAAACG
GGAAGAATTCCAAGAAGAGATGACTAAAATGCAGAGCTTTTTCCGATCTG
CTGGAAAGCATAGGTACGACAAAAAACAATATAGAGAGAGATGTCGGAGC
GGGGATAATAAAGATGGGAGAAATTGGTCAAGCCCACAGAAAGTAAAGTA
ATAGGGAAGAAGTTGATAATTGCAATAGAGCAGTAAAATGTGGGATGAAG
AAGTAAAGAGGCTATAAGAGTAAGGAGAAAGCACACGCAAGATACACATC
GAGCAAAACTACTTCAGATGGGAGATTAGGGGTATTGCTAGAAAGAAGTA
AAACCAGTTGTTGAGAAGAGAAAAAAGGGATATGGAAAGACTAGTTATAA
AACGAATGAAGACTTTGTGGCGGATGAAGCAATTTTGGGGTGGGGAAATA
AAGGGATACTAGGTAAACAAGCAGAGAGGCAGATCGGATAGCTACATTAA
GAGCACAGAACGGTAAAAGGGTTAGTATTCGAGGGGAAAAGGGAATACTT
GTAGAGCATTACCGCAAGCTAGGGCCCCACAACCAACGAAACCCTTCGAC
GAAGAATTCGGAAGGGTATCAACGCTGGGGGGAAGCGAACGTAGATGCAT
CAGAAAGGGAAGACAGTGGTTCAGAAGGGTTACAGGGAGAGTTCACAAAG
AAGAAGTAAAGAAGTGTGTAGCTAAAATTAAAAAAAGAAAGGCGCAGGGG
CAGACCGAATAGTTAATGAGTTTATGAGTACGGGGGAGAAGAATGCTTAC
CATGATGGTTAAGGGTTTTATAACTGGATAGGAAAACGAGTAACACCTAA
GATTGGAGAAGGAGTGGTAGTAAACTTGTTTAAAAGGAGACAAGGCTGAC
CCGGGTAACTATAGGGGGGTAACGCTACTAAGCACTGTAGGTAAAAAGTT
CTGTAGATTTTGAACGATAGAATGGGAACAATGATGGAGAAGGAAGAAAA
AATTAGCGAAGGGCAAGCGATTTAGGCCCAAACGTAGCTTGCGGGCGACC
ATGTGTACACATTAGGTAAGATAATCCAAAGGGAGGAAAGACGCGGGGCT
AACAACGTACTGTTTCTTTTTAGATGTACAGAAAGGGCCCACGATACAGT
ATGGAAATGGGCTTTGGAAAAAGTTGTGGGAAATAGGATAAGGAAAGATT
GGAGAATGATGAAGAAGACGGATTTTGCGAGAAGTGCTGTGATGTTGGAC
GGGGGAAAAAAACAAAGTACGTTGATATCCTACAAGGAGTTGCACAGGGA
TTACGCTATCCCCCTAAACCTATTCAAGGGATATATTAATGACATGATAG
TAGCAGTAAGCAGCATCGCGGGGGTCACGGTGGGGGGAAAATACGGTGTC
GGGGGTTGATGTTTTGCGGGTGATTTTGTCTGCATATCGAAACACCGAAT
GACTGCAGAAAACAATAGAAGGCACTAGAGTACACCAGGAAGTGGAGAGT
GACGGCGAACGTAAAAAAGTGCGCAGTAGTTTTTATGTAAGAAGATAAGG
AGAAACCCGGTAACTTTTAAGTGGGAAATGGGGGGAAGATGAATTACCGA
TCGTAGACCAGTATACTTACCTTGGCGTAGAGATCTCAAAAGATTGCTCT
TGGGATGCACACATAAATAAAATAATAGGCAAGGGTAAGGCACACGTAGG
CAAGATGGAAGCAGTCCCCGACAGACTCGCACCTTGACACTAGAATTAAG
AGATGTTACTGGGTGAATGTGATTGTACCAAAGCTAGAATATGCAGGAGA
AGTATGGAAGGAATGCGAAGCTCGTAAACAGCTGGAAACCGTACAGATGA
CAGGAGCTAAAAAAGTACTAGGATGCTCAGTACGACGAGTAAAACAGTAT
TGAGAGCAGAACTGGAATGTACCCACTTAAGACAAATAGATGACGTTGCG
TAAGTTGAAATGGCAATATAAAGTAAAGAACATGCCAAATAAGAGGTTGC
CAGCCATAGTTGATAAAGCTTGTATGGTAGAAAGTAACCAAGGGCGAGCT
GGAATAAGGTGGGATAGCGTAGTCGAGAAAGTATGGAAGGATATAGGAAA
CCAAAACGAGATGCTAGCCATAGAGAAATTTAGCGGATACAAGACAGAAG
TAAAAGAAAGGCTAGAAAGAAGGGAAAGGCTAGCGCTAAGAAAGAAGGTG
GAAGGGGAAGACACTAGAGATATACGGGGGGTTGAAAGAAGGAATAGGAA
TGAAAAGTTATCTGCACGGCCCAATGGACTTCGCGAAAAAGCTGAAACTG
CGATTTCGTGTAGGGACCTGGACCTGCCAGAAAGAAGAAGGAGGTATACC
AGTAGCCGGGAGGAGGAAATAATGCACAGATGTGCCCATGTGGCAAAGCC
ATAGAGAGTAGAATTCACATAGTGGGAGAATGTGAAAGGTACAAGGAGGA
AAGGATGTGTTAGAGGAGATGAAAAAATATACGAGTGGACATGGGGCAGT
TTGGTACACTAAATAGTAGCGAGAAACGATCGCTATCTTAGGATAGATGG
TGGCCACAGGCGTGCGAAACAGGAAGGGATAAGATTAGCAAAAAGTTTCT
TTGTAATATATGGAAACAACGTAATGAGCGCCCAAGTGTTGGAGGTGTCT
CTATTAGGAGTAGGAACGGTGCTCCGTCTCGAAAGGGATGCGTGGTCAAT
GGTCAAATGACTAAGGCAAGCACAAATGAGTACGCCCCCCCCCCCCCCCC
CCACCCCTTTGACTTTGCTTCCAAGAAACCAGAGTGCACAACCGACAAGC
CAGTCGTGTTTTTTTTTTCTGTGCGCCACGACGTAGGGTAGGTAGTCGTG
CTGCATCGTCACCGCCGTGGTGGTGCCGTAGCCGTTTCTACCAAGCCTGC
ACCACGGATTTTCTTTTATATGTACGTTGCGGTAGTTTCTCGCCATGGGT
TGTTTTCGATTCACTGAAGCATGTTCATGACCGTTAGGATCTCACGGTAC
TGCAGTGTCGTCCCTAGTTCGGCATCGTGTTCGTCGTGGCACGGCCATAC
TATTAGTTCGGTGTGCCGCCAGAAAAATGTGTGAACCTTTTTGTCCTAGA
ATGCAGTAGACCCGACAGTCAGTGGGTCGGACGGCCATTGCTCGCTTCGC
CCGCCCTGGCTTCCCAGATGTCGACGCAGGGCCGTTGGAGCTCGGCGGCA
TCCTCCTCACGCACGCCCACACCGGCCACTACACGGGGTTGCTTCAGCTG
GGCAAGGAAGGGGCAGATGCTAGGAACGTGCCGGTGAGATACACGGACCC
CCCAATCGTTTTACAGAAAAACGCGGCGTAAGGGCACTGACCCACAGGCC
CTGCGCAGACTAACAGTGCGCGGAGACTGGCATTGGTTTTATCACCAGGG
TGAAGTGGGTTCAACCCGATCCTAACAGACTCACACCTTGACACTACAAT
TAAGAGATGTGTCCTGATGAATGTGATTGTTCCAAAACTAGAGTATGCAG
GAGAAGTATGGGAAGGGAACGCGAAGCTCGCAAAAGCAGCTGGAAACAGT
GCAGATAACAGCACCTAAAAGAGTACTAGGATGCTCAAGTACGACGAGTA
GTACAGTATTAAGAGCAGAACTGGGAATGTAGACAAATAGAGACGTACGC
AAGTTGAAATGGCAATATAAAGTAAAGAACATGCCAAATAAGAGGTTGCC
AGCCATAGATGATACAACTGTATGGGAGAAAGTAACCAAAGGGCGGGCTG
GAATAAGGTGGGATAGCGTAGTCGAGAAAGTATGGAAGGATACGTATAGG
AAACCAAAAAGAGATGCTGGCCATAGAGAAGTTTGGGGGGTACAAGACAG
AAGTAAAATAAAAGATAGAAAGAAGAGAAAGGCTAGCGTTGAGAAATAAA
GTGGAAGCGGAGGAACACTTAGAGATATACAGGGGGTTAAGAGAAGGGAT
AGGAATCAAAACGTATTTGCACGGCCCAATGGACTTCGCGAAAACGCTGA
AACTGCGATTTCGTGTAGGGGACCTGGACCTGCCAAAAAGAAGAAAGAGG
TATACCAGTAGCCGGGAGGAGGAAGTAGATGCACAGATGTGCCCATGTGG
CAAAGCAAGAGAAAGTAGAATGCACATAGTGGGAGAATGTGAAATATACA
AGGAGGAACGGGATGTGTTAAAAGAGGAAATGAGGAAAATAGACGAATGT
GACATGAATAAGTTTGGTCCACTAGATAGTAGCGAGAAAACGATCGCTAT
CTGTGGAGATAGATGGTGGCCAAAGGAGGCGAAACAGGAAGGGGATAAGA
TTAGCAAAAAGTGTATTTGTAATATTTGGAAACAACGTGATGAGCGCCCA
AATGTTGGAAGTGTCTCTACTAGGAATAGGAACGGTGCTCCGTCTCGAAT
GGGATGCGTGGTCAATGATGAAATGACTAAGGCAAGCAACAAATGAGTAC
GCCCCTCCCCCCTATACACCCACCCACCGACCCACCCAACCACTCAACCA
CCCACCAACCCCTCGCGCTCGACCGAAAACGCCCGTGTTCGTCTCCTGAA
CACGGACATCGTGTTCGTCCGAGGGCAGGTATTCTGCACCCCGAAAATGG
CATCTTTCCTGAGGGACAACGAGCCGTGGGCGCAGCTCACGGAGCGAGGG
AACATCTCCATTCGGGAGCTGCAAACATCGGGCACCAGTCTGCACCCCGA
AAATGGCATCTTTCCTGAGGGACAACGAGCCGTGGGCGCAGCTCACGGAG
CGAGGGAACATCTCCATTCGGGAGCTGCAAACATCGGGCACCAGCAGCGG
CAGCGGCAGCGGCGGCGATAGCGGTGGCGGCGGCGGCGGCGGCGGCGGCA
GCAGCAGCGGTGGAGGCGGCTTTGCGTCCGTTCGGCTCACTCCCTCGGTT
TCCTTCCTCCCCGTGCTCGTACCGCACCGTGCCGAACTGTCTGACACGGT
GGCGTACGTCATCTCGATGTCGGGAAGTTCCGAGGATGACACCGGTGGGG
CGGCGTCTCCGCGGACCGCCATCCCCAGAATAGGCGGCGACTCGGCAAAT
AAGGTGATGTTCTGCCCCGACACGGACGGCTGGTCCGGCTGGACGCGGAG
CATCCGGGACTGGTGCGAGGAGGTTGACGTGGCGCTACTCGATGCCACGT
TCTACGGCAGGGCAGAGCTCAAGGATCGAGACATGAGCGAGGTGATTTTA
AGGCCTACATTGTTTTGCGGCCAAACTTCAAGCTGGGATCCTAGAAAAAA
GGAGAAGTGCTCCAGAAAACACTCGGAACTCTACCGGGTGATTCGTGTTT
TTTACTGTCCACCTGAGGAAAACGGGTATACATTGGGCCTAAAAAACAAT
TATCATTTGTTTTTTTTAGACGTTGCGTCTTCTCCCTCTCCCTCTTTGAG
CCAGCAGATTGTCGCGCCTCGAGAGCGCATCTATTTTTTCGGTGCATGTG
CGTCAGCGATGATTTCCCTGCGGTGTACCTTATAAGCCTTTTGGAACCCA
GAGATAGCGACCAACCGAATGAAATTGAGAAATTTCGTGGTCTCATTTCA
TTAACCGACTATATCGTGAAATCGCAGATTTTTCCAAATATTCACGCAGT
TATCATGCTTGCGCTCGTGTTGTATGCGTAGCCGCTAGCAATTGTACGTA
GTCCGTGTGCCTCATCGTCCAACCAAGCAGCGGCCAAAGCTGTAATCGTC
ATTTTTCTCAGTCACTTTGTTGACTGAAGCCCCTAAAAGGTTAATCACGA
CCGCCCCGCACCCTCCGCCCCAACCCTCCCCCCATCCAGGTTTCTCACCC
ACTCGCGCAGGACACGATGAAAGAGCTGGCCGGCTGCAAGGCCGAGGTGG
TTTTGGTTCACCTCAACCACACAAACCCGCTCTTCGTGGTGGATTCCCCC
GAGCGAGCGCAGGCGGAAGCAGCAGGCTTTAAGGTGAGGGTCACTTAGAC
AAGACGAGGTGTGGCACCCCTTGCCGCCTTGGTGACTTTCCTCTGCCTTT
CAAGAGCGGGGGGCCGGAAAGGAAGCCAGTTTCTGTGAAAGGTGTCACTC
TGTTGCTCACGCAGAGGAAGCCTACGTACCCCTTCTTAGTACGGCACGCC
TGTTTGGCTACTGTGAGGTGTGGCACCCTCGCAATTTTCCTCTGGCTTAC
AAGAAGGAACTCCTGCGTGGAAACCCTGTTCTGTAAACTCGTCGCTCTGT
TTCTCAAGCAGGGGAGAGAGCTGCGTACCCCCTTAGAACTCTGATACCAT
CGCCTGTGGGGAGATCCAATCGACAGTAATTTCATGTTTTGTTTTGTGCT
CACTTGCCTACTCGGCCGCTTCTCTTGCCACTGCCGACACAATACAAGCA
GTTACTGTTACAGGGTTAAGCTTGGCACGCATTATTCATAACGTGGAGGA
GACCCTGTCCCCCCGTGGGTACGTAACAGGCTCCGCGGTCATGTCCTACC
AAAACCGTGTGTTGTCGATTATCATCCGGTGTGAACAGCGTCCCGCTGTT
CCCCAAATACACCTCTCCACCATTACCACCCACCAAAGCTTAGACTGAGT
TCATACGTATAGACTACCACCTGAGTGAGCATCGGTCGTGGCTTGTACAT
CTGGTCTCTCGGGGCCCATAGCTGATCCTTCCAGCTCACGAGAAAGCCGG
GGGAACCTAGTTGTGGTCCTTCGCGTGCAGAAGCCACCGTGTGTTCATAT
GCACGGAGGCTTGTACCCCCGGGGACCGCTCGTCATTATCCCCGTTTTCA
TGTCTACCAAACCTCAACCGGAAGCCCGCTTGTATCCACAGTTATGCCCA
GAGAACCGCCGCAACATGACATGCACTGGCACTAGGCTGTACCGGTACCT
TTTAACGTTTTTCGTGTCGGAAACCCCCTTTTCTGCATACCTTGTATATA
GGTGGGAACGTTCGGCATGGAGTGGACACCTACCGCATAACAAGAAGCGT
AGATTCGCCGCTCTCGGGTCTACTTGTAACGCTGGTCTACTTGCAGCGCT
GCATATTTAGCAATGCTCCAGAGGGCAGGGCGTACTGAATGATCCTGGTA
CTACTGTATGGGGAAACTTACCCCGGGGTGGACTGATGGTGCTGTGGTGG
TTGTGACCCTTTGACAAGGGCGGCCGGTGCACTGCACTACGGTACGTATG
AATACTCCTGTAGCAGAAGGCAAGAAACAACACAGGTACATTCGAGTATT
TATTTGACATTTTCCTGTCGAGTAGACTGCGTCGGTGGCGATGCTTAAAG
CTGCCCTACCGCTTGGTGAACAAATGTTTCAGGCTGATTTTATTCTGAAC
AGGGGTTTCATTCAACACGTGGCGGGGGCACGCCTTTCGTGTACTGTGGT
ATATCCATGTATGCCCGGTAGCTTTCATCAGGCTGGATCATTTTGTTTTG
CAATCTATATATATTTTGGGTTTGTTGAGGGATACTGAAGTGTAAATTTC
GGGCGTCGATGAAGGGGGTGAGGAAATTTGCTATCACTTCTATGGCGGCG
TTAGTGTCCCTCTTGTGTTGCCTCCTTGCGGAGGCGTTTTTTTGTCCGCT
GGAAAGAGGATATTCTCGCTCCTTCTGGTCACAGAAGACACCAGGCCGAG
GCATGCAGCACGTTTCAAGTGTTGACAAATATACTTCGTAGCTGTAGTGC
AGCACCAGTAAAAATCACTGGCGTGCTTTTCCCCATTGTACTTTGTGTGG
TTTTGGTTTGGAGAGTCGCTCGCACAAGTTCGCATGCCAATTGGTAGCAG
TTGCTTAGCCGTGATATTTAATAGTATATGCCATACCTTGCATACGATAC
TGAAGCTTGGAAGCTGGGTGACACGTCGGTCCCGTTTGTGTTCCTGTGCT
ACTATGCCAGGAAGACATCATCAATCAGCTGTCACCAATAGGCTGGAGAC
CTCCGTCACAAGTTAAACCGCTGTATTTTTGCCGTGTGGCGTCGACATAC
GCAAGCACAACAAGTAGATTAATTCCCGAGGACTTGCTTGCAATATCGGG
ATCGGGTATCATACGGGTTGCCTCATAAACTGAACGACAAAAAATGTAGC
TTTCCGCAGAAAGAGGGGTGTGTGAAGGCGTTCTGGAACCCGAATAGTAT
TTGAGGGCAGGCCCTTGCCTTTGGGCCTGAAACATAATTTGAAAGGTGTT
TCTGAAACAGGCGTACCTATCTCGCGGTTTTGGTGCCTTTCTTTCAAGAG
GCGAAAAAAGCCATGGCAAAACCACCTTTCAGGTACACTTGGAGATTAAT
AACTCTGTTAGGTTGGAATGCGCAAAGTCAGGGAAAAGGGGGTACGTATG
TATAGGATATACAGTAGAGTCTGTCGCTGCGTGCCGCATGCTGTTTGGGG
CCAGATACGTAGGCATTTATCCATGAAAATAGAAGTACTTGAATTTAGGG
TGGGGTGTTCCTTGGGGCCCTCCGAAGGGTTTTATAAGGCAAATCGAATG
CATTTTTAAGGCACGGTATGTCTTAACTTGATAGGCGCGGTTCCGCGCTT
CAGGCGTTTTTTTATTTGTCGGGCCTATCTACACATAAATGCCTATCGCC
GCATGCCCACCTGCTGAAGGCCTTAGAAGGACAGGGTCTAGTTGAGGGAG
TAGCGGAATCCCACTTTTGATACCACATGCATTACGTGTTTTTAGGTACG
GGTAAATACCAAGACGATGGACTCTCCTCGGCATAAAAGAGAGAAGACAA
CGACGACAGCGTCAGGGTAGACGAAGGGTAGACGAAGAGAGTGAATACCT
GGTCCGCCAGTAAGAGCCGCGTGTCTGGGTACGGAATATATTAGCCTAGC
AGGAGACAGCGCGGCAATTGTAATTGATCGACTTTCCCACCCAC
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1030:34454..47797+

>mRNA_S-latissima_F_contig1030.280.1 ID=mRNA_S-latissima_F_contig1030.280.1|Name=mRNA_S-latissima_F_contig1030.280.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1926bp|location=Sequence derived from alignment at S-latissima_F_contig1030:34454..47797+ (Saccharina latissima SLPER63f female)
ATGCCGGCGAAGGTCGTCCTACTCGGCTGTGCTCAAGATGCGGGGGTGCC
CCAAATGCCGGCGAAGGTCGTCCTACTCGGCTGTGCTCAAGATGCGGGGG
TGCCCCAAGTAGGGTGCGCTTGCCAACGGTGCGACAGCGCTCGATCCAAC
CCGGCCGACAAAGACTGCATGGTCACGTGCTTGGGTATCGTCGACGAAAG
CGAGGGGAAGGTAGGGTGCGCTTGCCAACGGTGCGACAGCGCTCGATCCA
ACCCGGCCGACAAAGACTGCATGGTCACGTGCTTGGGTATCGTCGACGAA
AGCGAGGGGAAGGTGTTCCTCGTGGACGCTACCCCCGACCTCGGTGCGCA
GCTGTGGTCCATACAGCACACGGAACGAAAAGGTGCGCCCGCTGTATGTG
TTCCTCGTGGACGCTACCCCCGACCTCGGTGCGCAGCTGTGGTCCATACA
GCACACGGAACGAAAAGGTGCGCCCGCTGTATGGCCGTTGGAGCTCGGCG
GCATCCTCCTCACGCACGCCCACACCGGCCACTACACGGGGTTGCTTCAG
CTGGGCAAGGAAGGGGCAGATGCTAGGAACGTGCCGGGCCGTTGGAGCTC
GGCGGCATCCTCCTCACGCACGCCCACACCGGCCACTACACGGGGTTGCT
TCAGCTGGGCAAGGAAGGGGCAGATGCTAGGAACGTGCCGGTATTCTGCA
CCCCGAAAATGGCATCTTTCCTGAGGGACAACGAGCCGTGGGCGCAGCTC
ACGGAGCGAGGGAACATCTCCATTCGGGAGCTGCAAACATCGGGCACCAG
TATTCTGCACCCCGAAAATGGCATCTTTCCTGAGGGACAACGAGCCGTGG
GCGCAGCTCACGGAGCGAGGGAACATCTCCATTCGGGAGCTGCAAACATC
GGGCACCAGCGGCTTTGCGTCCGTTCGGCTCACTCCCTCGGTTTCCTTCC
TCCCCGTGCTCGTACCGCACCGTGCCGAACTGTCTGACACGGTGGCGTAC
GTCATCTCGATGTCGGGAAGTTCCGAGGATGACACCGGTGGGGCGGCGTC
TCCGCGGACCGCCATCCCCAGAATAGGCGGCGACTCGGCAAATAAGGTGA
TGTTCTGCCCCGACACGGACGGCTGGTCCGGCTGGACGCGGAGCATCCGG
GACTGGTGCGAGGAGGTTGACGTGGCGCTACTCGATGCCACGTTCTACGG
CAGGGCAGAGCTCAAGGATCGAGACATGAGCGAGGCGGCTTTGCGTCCGT
TCGGCTCACTCCCTCGGTTTCCTTCCTCCCCGTGCTCGTACCGCACCGTG
CCGAACTGTCTGACACGGTGGCGTACGTCATCTCGATGTCGGGAAGTTCC
GAGGATGACACCGGTGGGGCGGCGTCTCCGCGGACCGCCATCCCCAGAAT
AGGCGGCGACTCGGCAAATAAGGTGATGTTCTGCCCCGACACGGACGGCT
GGTCCGGCTGGACGCGGAGCATCCGGGACTGGTGCGAGGAGGTTGACGTG
GCGCTACTCGATGCCACGTTCTACGGCAGGGCAGAGCTCAAGGATCGAGA
CATGAGCGAGGTTTCTCACCCACTCGCGCAGGACACGATGAAAGAGCTGG
CCGGCTGCAAGGCCGAGGTGGTTTTGGTTCACCTCAACCACACAAACCCG
CTCTTCGTGGTGGATTCCCCCGAGCGAGCGCAGGCGGAAGCAGCAGGCTT
TAAGGTTTCTCACCCACTCGCGCAGGACACGATGAAAGAGCTGGCCGGCT
GCAAGGCCGAGGTGGTTTTGGTTCACCTCAACCACACAAACCCGCTCTTC
GTGGTGGATTCCCCCGAGCGAGCGCAGGCGGAAGCAGCAGGCTTTAAGGT
GGGAACGTTCGGCATGGAGTGGACACCTACCGCATAAGTGGGAACGTTCG
GCATGGAGTGGACACCTACCGCATAA
back to top