mRNA_S-latissima_F_contig1025.231.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1025.231.1
Unique NamemRNA_S-latissima_F_contig1025.231.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1025.231.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.740e-26
Identity = 65/200 (32.50%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:    1 KPDVVVGDTCRRFEGVR-EKEGVSGASSLVQAAIASDARVFILECLGNLLRTTEWNDEILPALERESYIVDKVEISASHVGFPWRRKRTFVVGIKGGLATKGKLAVWKRKLEKVKQPVQELGEFLGRRGAYFLKRGIGERAIYSFNEPIISLNRVHIMGEK-PTEGYVAHPADTARLEEAEELHFNDYAKITTGQEHYVI 594
            +P+V+VG+ CRR++  R          ++V   +AS A++ ++EC     RTT W D + P LE     V+   + A+ VG P  ++R FV+ +K                          G FLGR G YFLKR  G++ ++SF +P I+L   HIMG + P E Y  HP D   +  A++L + D+ K+TT Q  + +
Sbjct:  719 RPEVLVGNACRRYDPERLGNTATHQTEAIVDTFLASRAQLLVVECPAGFARTTAWRDSLRPRLESARCSVEDALLHATDVGVPTGKQRVFVIAVK-----------------------PRPGGFLGREGCYFLKRLPGDKGVFSFAKPTITLTHGHIMGRRLPPEDYQPHPTDDGPVASAQDLSWGDFVKLTTTQGDFTV 895
[Close]
BLAST of mRNA_S-latissima_F_contig1025.231.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.950e-24
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 1 
Query:   82 LVQAAIASDARVFILECLGNLLRTTEWNDEILPALERESYIVDKVEISASHVGFPWRRKRTFVVGIK--GGLATKGKLAVWKRKLEKVKQPVQELGEFLGRRGAYFLKRGIGERAIYSFNEPIISLNRVHIMGEKP-TEGYVAHPADTARLEEAEELHFNDYAKITTGQEHYVI 594
            L+Q  I+S A++ ++E          W   + P L+     V+   + A+ VG P  ++R FVV +K  G      KL  WK+ +E+    +  +GE+LGR G++FLKRG   + I+SF EP +++ + HIM  KP  E Y AH  D   LEEA+EL + D  K+TT +E  V+
Sbjct:  705 LLQIFISSRAQIMVMEAPARFTGIEVWRVTLAPQLQMAGCEVETATLKATSVGVPTNKQRVFVVAVKRYGDDNLGSKLQRWKQNVERSAPSIPTVGEYLGRAGSFFLKRGALHKEIFSFAEPTVTITKDHIMARKPPVEEYQAHLKDCGTLEEAQELSWTDCVKLTTTREDLVV 878
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1025.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE3.740e-2632.50Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KNP4_9PHAE2.950e-2436.21Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1025contigS-latissima_F_contig1025:143009..143602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.0800407-CDS-S-latissima_F_contig1025:143008..1436021622815388.0800407-CDS-S-latissima_F_contig1025:143008..143602Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1025 143009..143602 +
1693924854.3100288-CDS-S-latissima_F_contig1025:143008..1436021693924854.3100288-CDS-S-latissima_F_contig1025:143008..143602Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1025 143009..143602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1025.231.1prot_S-latissima_F_contig1025.231.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1025 143009..143602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1025.231.1

>prot_S-latissima_F_contig1025.231.1 ID=prot_S-latissima_F_contig1025.231.1|Name=mRNA_S-latissima_F_contig1025.231.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=198bp
KPDVVVGDTCRRFEGVREKEGVSGASSLVQAAIASDARVFILECLGNLLR
TTEWNDEILPALERESYIVDKVEISASHVGFPWRRKRTFVVGIKGGLATK
GKLAVWKRKLEKVKQPVQELGEFLGRRGAYFLKRGIGERAIYSFNEPIIS
LNRVHIMGEKPTEGYVAHPADTARLEEAEELHFNDYAKITTGQEHYVI
back to top

mRNA from alignment at S-latissima_F_contig1025:143009..143602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1025.231.1 ID=mRNA_S-latissima_F_contig1025.231.1|Name=mRNA_S-latissima_F_contig1025.231.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=594bp|location=Sequence derived from alignment at S-latissima_F_contig1025:143009..143602+ (Saccharina latissima SLPER63f female)
AAACCAGACGTGGTGGTCGGTGACACCTGTAGGAGGTTTGAAGGGGTACG
AGAGAAGGAAGGAGTATCCGGAGCGAGTAGCTTAGTCCAAGCTGCCATCG
CCTCAGACGCGCGGGTTTTTATACTCGAATGTTTGGGCAACCTTCTGCGA
ACGACGGAATGGAACGACGAGATTCTCCCTGCTTTGGAACGAGAGTCATA
CATCGTGGACAAGGTGGAGATATCGGCGAGCCATGTAGGGTTCCCGTGGA
GGAGGAAACGGACATTCGTGGTAGGAATCAAGGGAGGCCTTGCCACGAAG
GGGAAGTTAGCCGTTTGGAAGCGGAAGTTGGAGAAGGTAAAGCAACCAGT
TCAGGAATTGGGGGAATTTCTGGGACGAAGAGGCGCATACTTCTTGAAGA
GAGGTATCGGAGAGCGAGCGATTTACTCGTTCAACGAACCCATCATCTCT
TTAAACCGTGTTCACATCATGGGGGAAAAGCCAACCGAAGGGTATGTCGC
ACACCCAGCGGATACGGCACGCCTTGAAGAAGCTGAGGAGTTGCACTTCA
ACGACTACGCCAAGATCACCACAGGACAGGAACACTATGTGATC
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1025:143009..143602+

>mRNA_S-latissima_F_contig1025.231.1 ID=mRNA_S-latissima_F_contig1025.231.1|Name=mRNA_S-latissima_F_contig1025.231.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1188bp|location=Sequence derived from alignment at S-latissima_F_contig1025:143009..143602+ (Saccharina latissima SLPER63f female)
AAACCAGACGTGGTGGTCGGTGACACCTGTAGGAGGTTTGAAGGGGTACG
AGAGAAGGAAGGAGTATCCGGAGCGAGTAGCTTAGTCCAAGCTGCCATCG
CCTCAGACGCGCGGGTTTTTATACTCGAATGTTTGGGCAACCTTCTGCGA
ACGACGGAATGGAACGACGAGATTCTCCCTGCTTTGGAACGAGAGTCATA
CATCGTGGACAAGGTGGAGATATCGGCGAGCCATGTAGGGTTCCCGTGGA
GGAGGAAACGGACATTCGTGGTAGGAATCAAGGGAGGCCTTGCCACGAAG
GGGAAGTTAGCCGTTTGGAAGCGGAAGTTGGAGAAGGTAAAGCAACCAGT
TCAGGAATTGGGGGAATTTCTGGGACGAAGAGGCGCATACTTCTTGAAGA
GAGGTATCGGAGAGCGAGCGATTTACTCGTTCAACGAACCCATCATCTCT
TTAAACCGTGTTCACATCATGGGGGAAAAGCCAACCGAAGGGTATGTCGC
ACACCCAGCGGATACGGCACGCCTTGAAGAAGCTGAGGAGTTGCACTTCA
ACGACTACGCCAAGATCACCACAGGACAGGAACACTATGTGATCAAACCA
GACGTGGTGGTCGGTGACACCTGTAGGAGGTTTGAAGGGGTACGAGAGAA
GGAAGGAGTATCCGGAGCGAGTAGCTTAGTCCAAGCTGCCATCGCCTCAG
ACGCGCGGGTTTTTATACTCGAATGTTTGGGCAACCTTCTGCGAACGACG
GAATGGAACGACGAGATTCTCCCTGCTTTGGAACGAGAGTCATACATCGT
GGACAAGGTGGAGATATCGGCGAGCCATGTAGGGTTCCCGTGGAGGAGGA
AACGGACATTCGTGGTAGGAATCAAGGGAGGCCTTGCCACGAAGGGGAAG
TTAGCCGTTTGGAAGCGGAAGTTGGAGAAGGTAAAGCAACCAGTTCAGGA
ATTGGGGGAATTTCTGGGACGAAGAGGCGCATACTTCTTGAAGAGAGGTA
TCGGAGAGCGAGCGATTTACTCGTTCAACGAACCCATCATCTCTTTAAAC
CGTGTTCACATCATGGGGGAAAAGCCAACCGAAGGGTATGTCGCACACCC
AGCGGATACGGCACGCCTTGAAGAAGCTGAGGAGTTGCACTTCAACGACT
ACGCCAAGATCACCACAGGACAGGAACACTATGTGATC
back to top