mRNA_S-latissima_F_contig1023.207.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 520 bits (1338), Expect = 4.870e-170 Identity = 389/604 (64.40%), Postives = 423/604 (70.03%), Query Frame = 1
Query: 715 SLGRELIGEGPLMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVDAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQATIHAAMNSV--LGLRVSTPESLGSHGGAG-----------YFAGGXXXXXXXXXXXXXRSTGGLSPLESLGXXXXXASVGMH--MLPS----------------HV--PTFR-TTEMSDFRAVAAWQREQQPXXXXXXXXXXXXXXXXXXXXGRGSDSD-----DSEIETVSLGSIGARTPVSSTAGSPRAVASYNTSPTLSGTASTPGGDWSLFSGGFGLGMAALQEGSSC---ASTPTTSRATPRVHFPEGLQALGGNDPVLGSVASTDDVDVDAQGDGEEEGKDVAGGATKEAAGSHAPXXXXXXXXXXXXXXXXR-------------VVDPNVMNSLEGTSSEDGEGEXXXXXXX---------------IADKVARLGRRLQSMGLGKYCSKFAENEVDLESLGLMTEGDLADIGIPKGPRLKILNAVGARGAGAAS 2316
S GRE++GEG MGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDL SVEHAAKSVDAYVAAAPIKAGAV+AAVTKT+ECPP LLD LGDRTTIARIVKETHAQVVVNKKI RIIVRGDHRSVDLAY SV+A IH A++ LGLRVSTP+S GS G G YF G XXXXXXXXXX SPL S X GMH MLPS H+ P +R + ++F +A WQ+EQ XXXXXXXXXXXXXXXXXXXX DSEIETVSLGSIGARTPVSSTAGSPR V SYNTSP LSGTASTP GDWSLFSGGFG+GMAALQEG S +STPTT+R TPRVHFPEGL+AL G S AS D+ V +G G A G + XXXXXXXXXXXX V + V+++LEG +S+ E XXXXXXX I+DKVARLG+ LQ+MGLGKYC KFAENEVDLE+LGLM+E DLADIGIPKGPRLKILNAVGAR A A +
Sbjct: 37 SAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMR----SPLVS--GAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGG-AGRASAASAGDLAV-LKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEEXXXXXXXXXXXXXXXXXXXXXXEDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAATN 632
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA) HSP 1 Score: 248 bits (632), Expect = 4.950e-72 Identity = 124/150 (82.67%), Postives = 138/150 (92.00%), Query Frame = 1
Query: 763 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVDAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQATIHAA 1212
YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAV+AAVT++L+CPPHLLDVLGDR TIARIVKET AQVVVNKK+AR+IVRG +V +A VQA I AA
Sbjct: 42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAA 191
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA) HSP 1 Score: 244 bits (624), Expect = 4.200e-68 Identity = 123/170 (72.35%), Postives = 142/170 (83.53%), Query Frame = 1
Query: 763 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVDAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQATIHAAMNSVLGLRVSTPESLGSHGG 1272
YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAV+AAVT++LECPPHLLD+LGDR TIARIVKET AQVVVNKK+AR+I+RG+ +V +A +Q I AA + GS GG
Sbjct: 57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAAAEHARRAILHASDYGSSGG 226
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 132 bits (332), Expect = 3.770e-28 Identity = 71/150 (47.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query: 769 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVDAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQATI 1203
++R GFVRC MDI EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG D + +ECPPHL+ +L R +TI RI +E+ A VV+N+K+ ++IV G +SV L A ++ I
Sbjct: 25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVI 174
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.480e-24 Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query: 769 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVDAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKI 1134
+++ GFVRC +DI EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG D V++ ++CPPHL+ +L R +TI RI +E+ A VV+N+K+
Sbjct: 292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.520e-18 Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 1
Query: 817 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPI---------------------------------KAGAVDAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQ 1194
EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ P AG D V++ ++CPPHL+ +L R +TI RI +E+ A VV+N+K+ ++IV G +SV LA A ++
Sbjct: 318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIE 478
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.820e-14 Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 865 MKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVDAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIARIIVRGDHRSVDLAYASVQATI 1203
++H++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG D + +ECPPHL+ +L R +TI RI +E+ A VV+N+K+ ++IV G +SV L A ++ I
Sbjct: 59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVI 176
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ) HSP 1 Score: 59.3 bits (142), Expect = 2.610e-6 Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 2146 LQSMGLGKYCSKFAENEVDLESLGLMTEGDLADIGIPKGPRLKILNAV 2289
L ++GL KY FAENE+DL+++GL++E D ++G+P GPR K+L AV
Sbjct: 9 LDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAV 56
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A7S1SBX6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SBX6_ALECA) HSP 1 Score: 60.1 bits (144), Expect = 1.540e-5 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 2116 ADKVARLGRRLQSMGLGKYCSKFAENEVDLESLGLMTEGDLADIGIPKGPRLKILNAVG 2292
A + A L LQS+GLGKY + EVDL +L L++E DLAD+G+P GPR K+ A+G
Sbjct: 421 ARRSAALDDLLQSLGLGKYVERLRAEEVDLAALRLLSERDLADLGLPLGPRRKLQAAIG 479
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Match: A0A1X7U136_AMPQE (SAM domain-containing protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U136_AMPQE) HSP 1 Score: 60.8 bits (146), Expect = 1.620e-5 Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 2146 LQSMGLGKYCSKFAENEVDLESLGLMTEGDLADIGIPKGPRLKILNAVG 2292
L +GL KY + F +NE+D +L LM+E D A++GIPKGPR+K+LNA+G
Sbjct: 2693 LDKLGLSKYHNLFQKNEIDHHALLLMSEKDFAEVGIPKGPRVKLLNAIG 2741 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1023.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1023.207.1 >prot_S-latissima_F_contig1023.207.1 ID=prot_S-latissima_F_contig1023.207.1|Name=mRNA_S-latissima_F_contig1023.207.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=624bp MAPIIHMDSQQASHHASWAAADSRQTRPGGQYAHQHQPQQQQQQQWPSGGback to top mRNA from alignment at S-latissima_F_contig1023:21827..28007+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1023.207.1 ID=mRNA_S-latissima_F_contig1023.207.1|Name=mRNA_S-latissima_F_contig1023.207.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6181bp|location=Sequence derived from alignment at S-latissima_F_contig1023:21827..28007+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1023:21827..28007+ >mRNA_S-latissima_F_contig1023.207.1 ID=mRNA_S-latissima_F_contig1023.207.1|Name=mRNA_S-latissima_F_contig1023.207.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=3744bp|location=Sequence derived from alignment at S-latissima_F_contig1023:21827..28007+ (Saccharina latissima SLPER63f female)back to top |