mRNA_S-latissima_F_contig1022.203.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1022.203.1
Unique NamemRNA_S-latissima_F_contig1022.203.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.010e-56
Identity = 107/155 (69.03%), Postives = 117/155 (75.48%), Query Frame = 1 
Query:  967 QAKESRGRLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTTLPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARSFVLAWATCKVLEPLRLIACIAVTPRVARALGRAPAKGVDDXXXXXXXXXXXXGSVTDKSRGDGKEEG 1431
            QAKES  RL+ LWRKYG VGIG YF IYFGSIA FYG+YDYGV+T+LPSGG AVIE MQEWMK  PEWA  YSDRLFGAM EDHRARSFVLAWATCKVLEP+RL+  IA+TPR+ARALGRAPAK  D             GS  D   G G++ G
Sbjct:  322 QAKESSNRLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTSLPSGGTAVIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKVSD--------ADEDEGSDADDGSGGGRKGG 468
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.330e-23
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1 
Query: 1000 LWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTT--LPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARSFVLAWATCKVLEPLRLIACIAVTPRVARALGRAPAK 1338
            +WR+YG V +G YF IY  ++   Y V+DYG MT   +P+G A   + +Q  ++  P+WA    + L+  M ++   R+FVLAW T KV EP+R++A + +TPR+ARALGRAP K
Sbjct:    4 MWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKK 118
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.160e-9
Identity = 46/120 (38.33%), Postives = 57/120 (47.50%), Query Frame = 1 
Query:  988 RLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYG-VMTTLPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARS----FVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            RL+ LWRKYG V IG Y S+Y   +   Y   D G V T+         E     +  T ++     D       E  R  S    F+LAW   K  EP+RL   +AVTPR+AR LGRAP
Sbjct:    6 RLKDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEESFNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAVTLAVTPRIARFLGRAP 125
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A6A3TMX1_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TMX1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.200e-9
Identity = 47/123 (38.21%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  985 GRLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTTLP---SGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARS----FVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            GRL+ LWRKYG V IG Y S+Y   +   Y   D G + T     S G    +     +  T ++     D       E  R  S    F+LAW   K  EP+RL   +AVTPR+AR LGRAP
Sbjct:   65 GRLKDLWRKYGVVAIGTYMSMYGVVLGSMYLAIDQGWVHTAKRSSSKGEGQADESFNLVTTTNKFVKIAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLAVTLAVTPRIARFLGRAP 187
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 8.930e-9
Identity = 42/136 (30.88%), Postives = 65/136 (47.79%), Query Frame = 1 
Query:  967 QAKESRGRLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTTLPSGGA--------------AVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARSFVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            + K    +L+ LWR+YG V +G YFS+YF  +   Y   + G ++T  +  +                  ++  W +D     H    R+      + +  SFV+AW   K  EPLRL   +A+TPR+AR +GRAP
Sbjct:   88 KGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRV------NAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAP 217
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: H3GLJ1_PHYRM (DUF1279 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLJ1_PHYRM)

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-8
Identity = 46/122 (37.70%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:  988 RLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTT---LPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARS----FVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            RL+ LWRKYG V IG Y ++Y   +   Y   D G + T     S G    +     +  T ++     D       E  R  S    F+LAW   K  EP+RL   IAVTPR+AR LGRAP
Sbjct:   70 RLKDLWRKYGVVAIGTYLTMYGAVLGSVYLAIDQGWVRTNKRTSSKGEGQSDETFNLVTTTNKFVRFAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAP 191
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: F0W5K2_9STRA (Uncharacterized protein AlNc14C21G2167 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.060e-8
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:  988 RLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTTLPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDH-------------RARSFVLAWATCKVLEPLRLIACIAVTPRVARALGRAPAK 1338
            R + LWRKYG V IG YF++Y        G+    +  ++ +G  +    ++     T ++    +     A+AED+             +  SFV+AW   K  EP+RL   +A+TPR+AR LGRAP K
Sbjct:    5 RFKDLWRKYGLVAIGTYFTMY--------GIVLGTIYISIENGLISKNRNVRSNKDTTTDFDVVSTTNKMIALAEDYGLAKYLDVERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKK 126
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A6A4EYG5_9STRA (DUF1279 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4EYG5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8
Identity = 47/123 (38.21%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  985 GRLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTTLP---SGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARS----FVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            GRL+ LWRKYG V IG Y S+Y   +   Y   D G + T     S G    +     +  T ++     D       E  R  S    F+LAW   K  EP+RL   +AVTPR+AR LGRAP
Sbjct:   65 GRLKDLWRKYGVVAIGTYMSMYGVVLGSMYLAIDQGWVHTAKRSSSKGEGQADESFNLVTTTNKFVKIAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLAVTLAVTPRIARFLGRAP 187
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: D0MUM9_PHYIT (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MUM9_PHYIT)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-8
Identity = 47/122 (38.52%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:  988 RLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMTT---LPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARS----FVLAWATCKVLEPLRLIACIAVTPRVARALGRAP 1332
            RL+ LWRKYG V IG Y S+Y   +   Y   D G + T     S G    +     +  T +W     D       E  +  S    F+LAW   K  EP+RL   IAVTPR+AR LGRAP
Sbjct:   42 RLKDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKWIAE--DLGIAQYLEVEQVSSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAP 161
[Close]
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Match: A0A7S1XYK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.740e-8
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 1 
Query:  991 LRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMT--TLPSGGAAVIERMQEWMKDTPEWAHHY--SDRLFGAMAEDHRARSFVLAWATCKVLEPLRLIACIAVTPRVARALGRAPA 1335
            LR +WR+YG V IG YFSIY  ++   + V+ +G++    +       IE++  ++++  E+      ++     + +   A +  LAW   K+ EP R +  + +TPR+AR  GR PA
Sbjct:   96 LREMWRRYGYVAIGTYFSIYAATLGGAFSVFHFGIVDPEVIVGDPRVAIEKLITFVQNQEEYVPQIILAEPYLHMLRDTPAATNIALAWIATKITEPARALITMGITPRLARLAGRVPA 214
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1022.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNZ5_ECTSI1.010e-5669.03DUF1279 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CLB5_9STRA2.330e-2344.35DUF1279 domain-containing protein (Fragment) n=1 T... [more]
A0A3R7J9G6_9STRA1.160e-938.33DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A6A3TMX1_9STRA5.200e-938.21DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A8K1C653_PYTOL8.930e-930.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GLJ1_PHYRM1.000e-837.70DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
F0W5K2_9STRA1.060e-832.31Uncharacterized protein AlNc14C21G2167 n=1 Tax=Alb... [more]
A0A6A4EYG5_9STRA1.400e-838.21DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
D0MUM9_PHYIT2.060e-838.52DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
A0A7S1XYK1_9STRA3.740e-830.25Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1022contigS-latissima_F_contig1022:63841..68673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog42099.EPrPV00000018888
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG4526@1,KOG4526@2759
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-10_004940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2086
Cds size1398
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1022.203.1prot_S-latissima_F_contig1022.203.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1022 63892..68036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815383.8167765-UTR-S-latissima_F_contig1022:63840..638911622815383.8167765-UTR-S-latissima_F_contig1022:63840..63891Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 63841..63891 +
1693924851.0458736-UTR-S-latissima_F_contig1022:63840..638911693924851.0458736-UTR-S-latissima_F_contig1022:63840..63891Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 63841..63891 +
1622815383.8653834-UTR-S-latissima_F_contig1022:68036..686731622815383.8653834-UTR-S-latissima_F_contig1022:68036..68673Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 68037..68673 +
1693924851.0840032-UTR-S-latissima_F_contig1022:68036..686731693924851.0840032-UTR-S-latissima_F_contig1022:68036..68673Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1022 68037..68673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815383.826872-CDS-S-latissima_F_contig1022:63891..647551622815383.826872-CDS-S-latissima_F_contig1022:63891..64755Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 63892..64755 +
1693924851.0604768-CDS-S-latissima_F_contig1022:63891..647551693924851.0604768-CDS-S-latissima_F_contig1022:63891..64755Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 63892..64755 +
1622815383.8387911-CDS-S-latissima_F_contig1022:66492..667141622815383.8387911-CDS-S-latissima_F_contig1022:66492..66714Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 66493..66714 +
1693924851.0678656-CDS-S-latissima_F_contig1022:66492..667141693924851.0678656-CDS-S-latissima_F_contig1022:66492..66714Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 66493..66714 +
1622815383.8526344-CDS-S-latissima_F_contig1022:67724..680361622815383.8526344-CDS-S-latissima_F_contig1022:67724..68036Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 67725..68036 +
1693924851.0758214-CDS-S-latissima_F_contig1022:67724..680361693924851.0758214-CDS-S-latissima_F_contig1022:67724..68036Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1022 67725..68036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1022.203.1

>prot_S-latissima_F_contig1022.203.1 ID=prot_S-latissima_F_contig1022.203.1|Name=mRNA_S-latissima_F_contig1022.203.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=466bp
MVLHGLASAKNMAPGRRLLSSRGGKRALLLPDSRPPASLTRSIKYAVERV
SEHRRPTSTAYSTAAIAPAAESSAVSRWRQESLGRPARVCWNNGRAGCLL
PFGNDELRRGMWSCSGMQRQLPVAEAGRAFLLPSPPWAMQVAGLQTTTSG
TGGNSTGGDKRGKSQMGVSSSSSPSSSSTADGAGASCTRPPTAASQEFAR
GPVSEEQALRDQQEAGKANYAGEGGKGTADGGPTGERGDELPSGSGGDPD
APRMAEIRDRLRDAQLDAREDARDWIKDKRDDMSTMQETLRDARRDGRLR
EELSDQAKESRGRLRGLWRKYGTVGIGCYFSIYFGSIAFFYGVYDYGVMT
TLPSGGAAVIERMQEWMKDTPEWAHHYSDRLFGAMAEDHRARSFVLAWAT
CKVLEPLRLIACIAVTPRVARALGRAPAKGVDDDDDDDDLEGAGAGSVTD
KSRGDGKEEGGGDRR*
back to top

mRNA from alignment at S-latissima_F_contig1022:63841..68673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1022.203.1 ID=mRNA_S-latissima_F_contig1022.203.1|Name=mRNA_S-latissima_F_contig1022.203.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=4833bp|location=Sequence derived from alignment at S-latissima_F_contig1022:63841..68673+ (Saccharina latissima SLPER63f female)
AATCATACCAGTCACGCACGGTGGTACGGTACACCATCGCCACACACGGC
AATGGTATTGCATGGACTTGCCTCGGCAAAGAATATGGCACCAGGCCGTC
GCCTGCTCAGCAGTAGAGGTGGTAAGCGTGCCCTCCTCCTTCCTGACTCA
AGACCGCCAGCATCCCTCACACGCTCCATCAAATACGCCGTAGAGCGAGT
TTCAGAACACCGTCGCCCCACAAGCACCGCGTACTCGACCGCAGCAATAG
CACCAGCAGCAGAGAGCAGTGCGGTGTCACGATGGCGACAAGAATCTCTA
GGAAGACCTGCCAGGGTTTGCTGGAATAATGGCAGAGCGGGCTGTTTGTT
GCCTTTCGGTAATGATGAGCTCAGGCGGGGAATGTGGTCCTGCTCGGGAA
TGCAACGACAGCTCCCAGTTGCAGAAGCAGGCAGGGCCTTTCTGCTGCCT
AGTCCGCCGTGGGCGATGCAGGTCGCGGGGTTGCAGACGACGACGAGCGG
GACTGGGGGCAACAGCACGGGCGGTGACAAGCGTGGCAAGTCGCAGATGG
GGGTCTCCTCTTCCTCCTCTCCATCCTCCTCCTCGACAGCAGACGGAGCA
GGGGCTTCATGCACACGGCCACCCACAGCAGCGTCGCAGGAGTTTGCGAG
GGGGCCGGTAAGCGAGGAGCAGGCCTTACGGGACCAGCAAGAAGCCGGCA
AGGCCAACTACGCGGGAGAGGGGGGCAAGGGTACCGCAGACGGTGGTCCT
ACGGGAGAGAGGGGAGACGAGCTGCCCTCTGGTAGTGGTGGCGATCCCGA
TGCTCCCAGGATGGCCGAGATTCGAGACAGGTTGAGGGACGCTCAGCTTG
ACGCCAGGGAGGATGCGCGGGACTGGATAAAGGACAAGCGGGACGACATG
AGCACCATGCAAGAGGTATGGTGCGAGTGCGTACAGCAGATACACGAGGG
TGCGGATGGGTGGATGCAAGGTCGCCTGCATTAGTTGGGGGCGTTACGTT
AGCACGACGCCGTATGACTCCGTTGGAAAAATCTCTGATGTACTCGCATC
CGTATCCTTATGGTACTGCTGTATCCATATGCTTTCGTCTTCGCAGGCAG
CTCTATTCATTTCAGAGATAATAACGGTCAATAGATTCCGGTACTTGCCG
TATCATGGAATGTTAATGTTCGCTCCTCCGGCGCACCCTCGGGGCTTCGA
GCTTGGCGAACGGACCAGGAACAATGACGTAGGGCCACCACCACCGCCGC
CTATCCACCTGCAAGAAGGCATAACAGGGTGTCTATGATGCCGCACACCG
AAATTGATTGTTCGTACGTCTGTAGTTCGCGGTTCCACGGGCGACGCCAT
TCCTCAAGCCTCACGAGATGCTCACCCGCAAAGACGAATTGAGTATTGAC
TTCGTACGTATACATTCAGTTTTTCACCAACTACCGTAACCTCGTGGTTT
CAGCCAATAGAGCTCTTCTTCGTATTTGACGAAGCACGACGAGTACGATG
ATATTTTTGTACGAGCACGAGTTCAGATCGACGTGTGACCTCAACAGGAC
AGCAGTCGCTCAGTATCATGAATACCTGGTACATGGATACCCCGGGGCTA
TCGCAGAGGGTGGTGGCGTTCTGGGTGGCAGACGACAGCGCTTACGTACG
TACGCTCTAGAGTTGAAGGCGTGCAAGATGGCAGGCCGCCCTCTCCTCAT
TACCAGGTACCAGGTACCACTCTGGTCGGGAATGTAAGGACCGTTTGGTA
CCCACATCAGAGTCGAAACGGGAGTTATTTTCTCGGTCAGAGTAGTATCA
AAGAAGCATATCATACCGGCGCGTTGCTTGGCCCCCTGGGATGGGGGGGG
ATAATAACATAATGAAAATCCCAGTACGATACAGCAACGTAATGAACGTA
ATCACCTACAGTTGCACTGCTGTACATGGTGGGTGGGTAGGTGGGTGGGT
GGATGGGTTGGTAAGTGGGTGAGTGGGTGGGCGGCCGTATTACAGCAGCA
GTAGTAGTATTAGTAGATGCTGTACAGCAATACCTTGGTGGGTGGGTGGG
TGGGGGTGGGTGGGTGGGTGGGTGGGTGGGTGGGTGGGTGGATGGGTGGG
GAGTGGGTGGCTTGATGGGTGGATGGGTTGGTGGGTGGGCGTGTGGATGG
GTGCGTGAGTGGGTTGGTGGGTTGGAGTCAATGGCCTTAATACGTTAAAT
AACAGTTTTTTTAGTCCACTATTAATAGTGCTGTGTCGTATCACTTTTAA
TAGCGGTTATAAAGTACCCCACCAACATCCAGCGCCTGTTCAATGCCCCC
AAAGTGGAAACCAACTTGCTACATATGAAAAGGACGAACAACACTCCGCG
AAAAAACGAGCAAACTTTATCTGGGCACACACTACGACACTGGTTGTGAA
AACGGCATCACATCCCTTAAGGGGGCCGCGGGATGTGTCCGCAATATTCT
AGCTCTTCTCAGACTCCAATCAGACAGTTCTAGAGCATTGTCTGTCGTCG
ACCGCCTCAACAACACAAAACAACTCTCTACCAGGTAAAGGATAAGCGTG
GTGACCGAACAAGTCGGCGTGCAATAGGAATCAGACAATTATTTGGTATT
TGCCAATGAGTGCCCCTCATCACATGCACACCGACCACGGATGCCGTCGC
AGACGCTGAGAGACGCCCGCCGAGACGGCCGGCTGCGGGAAGAGCTTTCC
GACCAGGCGAAGGAGAGCAGGGGGCGGCTCCGGGGGCTCTGGCGCAAGTA
CGGGACGGTGGGCATCGGGTGCTACTTCAGCATCTACTTCGGGAGCATCG
CGTTCTTCTACGGAGTGTACGACTATGGGGTCATGACCACCCTGCCCTCG
GGAGGGGCAGCGGTTATTGAACGTGTGAGTCGACTCAGCTCTGATTTGCG
CTGCCACCATTTTCTCTGTCGTGGTTCCGGTTGGGATTTTTGTTTTTCTT
AGCTATGTCTATGTTATGGGCGTTCGGTTGGACGTTTGGTTTGATGTTTG
CACCGCATTTTAGTTGTGCAGCGCGTCTTTTTTCGCCGGGGAGACAATGC
TGTAAGAGGAATGTGGTGTAAGAAGGATGGCTGATTTTCTCCATGGCTTT
TGTTTCTCTCGAATGTTTTTGGTACGTCGAAGGTAAACATTCCTCTTCGG
ATCACATGTTGGGCTGCTCTTTGCACTCGCGTCCCCCGTCAACCAGCTGG
GGACGCAATGGCGGGGGTTTGATTGCGCTGGATGCGATTCAGTCGGGAAC
ACTTATGTTTTGAGGGGTTTTGTTTTGGCAAGGCTACGTATTCAGGTAGA
GCCCTCAATGTGGAGCTGCCGCAGCACTTTATCGAAGTGTTTCGTTTCCT
ATTGGCCCCTGTAGTTGTGATTTTGACAACCCTCCCCGGTGCCGGTGCAT
TGCAGCCTCACGAACATGCTGTCGGAACAAACTTCGTTATGTACTGGCCG
CAGCAGTCGCATGCAACTCATAGATAGCTCCTCCCCATCCTTCTCTATAT
ACCCCCACAAGCACCCTGCCAGATCAAACTGCGGTATGTACTAGCCACAG
CAGTCGCATGAAAGTTAACCGTGTTTCCTCCTCCTTCTACTCCTGTACCC
TTCTAGTCGAGCACATCATAGGGGTGGGGTGTGGGGTGGCAAGCGTTATG
TCTTCCCCCTCCAATCAGCGCCTCACTACCGCTATCAGCCTCACAACCAT
CCAGTCAAACGAAGCTGCTGTAGACGGGCCACAGCAATCGTATACAAGCT
ATGTACCGGCATCCATAACTCCCCCTCATCCTCATTATAATCAAGCAACA
TCACAAACGTTTGTTTCTACCGCCTCACCGCGCCCACCCCGCACCCCTCC
CCCATACATCCACCCATCCACACCGGTGCGTTAGATGCAAGAATGGATGA
AAGACACGCCGGAGTGGGCGCACCACTACTCGGACCGACTCTTCGGTGCC
ATGGCGGAGGACCACCGGGCGCGCAGCTTCGTCCTCGCGTGGGCGACGTG
CAAAGTTTTAGAGCCGTTGCGTCTAATCGCTTGCATTGCCGTTACGCCTA
GGGTGGCCCGAGCGTTGGGACGAGCACCCGCCAAGGGGGTCGATGACGAT
GACGACGACGACGACTTGGAGGGGGCGGGGGCGGGGTCTGTAACGGACAA
AAGTAGAGGGGATGGGAAAGAGGAGGGGGGTGGTGATCGCCGCTAGCGTG
TTTGTTACCGGTAAAGGCGTATCGTCGTCTGTGTTCGTTTATGCTGCGGA
TTGAACACATGCCATGGGCATGACCGTTCGACGTGTCAGCATTCGTGGGA
GATTGACTGCCGCCACGTGATATACGTGATGTTTTTTCCATTTTGTTTCG
ACGGGGCCGATCGAGCTTTGGCGTTACAGTTGGAGTTGGGGGTGATTGGT
TTTCGTACCGTGGTATTGAGATAGAAGAGTCTTCCACGGGCTTGTCGGCC
CGTGCTATTTTTAACAGCGCTCTCAAGTGCCTTGTTGTACCTTGTAGACT
GTGCGCGGGGTGACAAGAGACCGCGAGCTGTTTCCTACGAATGTTTTTCT
TCGTGTTATCGATATGGTAAGCCCGCACCCTCACACTTGAGCGGCGAGGT
TCGAAGGAACACCAAAGGGCGGGGAGAATGTTTTGTACTGCTGTAACGAC
TGCTGCAGTGTACCAGCATCAATAACGACAATGAAGAGCAGCTATTAATA
CGAATAGCTGCAGAAAACAGATTCCGTACCCACTGTACGCGTAGTACGAA
GCAATATGACTTCGGGATGAAGAATATTTTGCGGGACCATATTCTGACGG
TCTCAACAAATAATACGAACTCGTACCAGGCAG
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1022:63841..68673+

>mRNA_S-latissima_F_contig1022.203.1 ID=mRNA_S-latissima_F_contig1022.203.1|Name=mRNA_S-latissima_F_contig1022.203.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2796bp|location=Sequence derived from alignment at S-latissima_F_contig1022:63841..68673+ (Saccharina latissima SLPER63f female)
ATGGTATTGCATGGACTTGCCTCGGCAAAGAATATGGCACCAGGCCGTCG
CCTGCTCAGCAGTAGAGGTGGTAAGCGTGCCCTCCTCCTTCCTGACTCAA
GACCGCCAGCATCCCTCACACGCTCCATCAAATACGCCGTAGAGCGAGTT
TCAGAACACCGTCGCCCCACAAGCACCGCGTACTCGACCGCAGCAATAGC
ACCAGCAGCAGAGAGCAGTGCGGTGTCACGATGGCGACAAGAATCTCTAG
GAAGACCTGCCAGGGTTTGCTGGAATAATGGCAGAGCGGGCTGTTTGTTG
CCTTTCGGTAATGATGAGCTCAGGCGGGGAATGTGGTCCTGCTCGGGAAT
GCAACGACAGCTCCCAGTTGCAGAAGCAGGCAGGGCCTTTCTGCTGCCTA
GTCCGCCGTGGGCGATGCAGGTCGCGGGGTTGCAGACGACGACGAGCGGG
ACTGGGGGCAACAGCACGGGCGGTGACAAGCGTGGCAAGTCGCAGATGGG
GGTCTCCTCTTCCTCCTCTCCATCCTCCTCCTCGACAGCAGACGGAGCAG
GGGCTTCATGCACACGGCCACCCACAGCAGCGTCGCAGGAGTTTGCGAGG
GGGCCGGTAAGCGAGGAGCAGGCCTTACGGGACCAGCAAGAAGCCGGCAA
GGCCAACTACGCGGGAGAGGGGGGCAAGGGTACCGCAGACGGTGGTCCTA
CGGGAGAGAGGGGAGACGAGCTGCCCTCTGGTAGTGGTGGCGATCCCGAT
GCTCCCAGGATGGCCGAGATTCGAGACAGGTTGAGGGACGCTCAGCTTGA
CGCCAGGGAGGATGCGCGGGACTGGATAAAGGACAAGCGGGACGACATGA
GCACCATGCAAGAGATGGTATTGCATGGACTTGCCTCGGCAAAGAATATG
GCACCAGGCCGTCGCCTGCTCAGCAGTAGAGGTGGTAAGCGTGCCCTCCT
CCTTCCTGACTCAAGACCGCCAGCATCCCTCACACGCTCCATCAAATACG
CCGTAGAGCGAGTTTCAGAACACCGTCGCCCCACAAGCACCGCGTACTCG
ACCGCAGCAATAGCACCAGCAGCAGAGAGCAGTGCGGTGTCACGATGGCG
ACAAGAATCTCTAGGAAGACCTGCCAGGGTTTGCTGGAATAATGGCAGAG
CGGGCTGTTTGTTGCCTTTCGGTAATGATGAGCTCAGGCGGGGAATGTGG
TCCTGCTCGGGAATGCAACGACAGCTCCCAGTTGCAGAAGCAGGCAGGGC
CTTTCTGCTGCCTAGTCCGCCGTGGGCGATGCAGGTCGCGGGGTTGCAGA
CGACGACGAGCGGGACTGGGGGCAACAGCACGGGCGGTGACAAGCGTGGC
AAGTCGCAGATGGGGGTCTCCTCTTCCTCCTCTCCATCCTCCTCCTCGAC
AGCAGACGGAGCAGGGGCTTCATGCACACGGCCACCCACAGCAGCGTCGC
AGGAGTTTGCGAGGGGGCCGGTAAGCGAGGAGCAGGCCTTACGGGACCAG
CAAGAAGCCGGCAAGGCCAACTACGCGGGAGAGGGGGGCAAGGGTACCGC
AGACGGTGGTCCTACGGGAGAGAGGGGAGACGAGCTGCCCTCTGGTAGTG
GTGGCGATCCCGATGCTCCCAGGATGGCCGAGATTCGAGACAGGTTGAGG
GACGCTCAGCTTGACGCCAGGGAGGATGCGCGGGACTGGATAAAGGACAA
GCGGGACGACATGAGCACCATGCAAGAGACGCTGAGAGACGCCCGCCGAG
ACGGCCGGCTGCGGGAAGAGCTTTCCGACCAGGCGAAGGAGAGCAGGGGG
CGGCTCCGGGGGCTCTGGCGCAAGTACGGGACGGTGGGCATCGGGTGCTA
CTTCAGCATCTACTTCGGGAGCATCGCGTTCTTCTACGGAGTGTACGACT
ATGGGGTCATGACCACCCTGCCCTCGGGAGGGGCAGCGGTTATTGAACGT
ACGCTGAGAGACGCCCGCCGAGACGGCCGGCTGCGGGAAGAGCTTTCCGA
CCAGGCGAAGGAGAGCAGGGGGCGGCTCCGGGGGCTCTGGCGCAAGTACG
GGACGGTGGGCATCGGGTGCTACTTCAGCATCTACTTCGGGAGCATCGCG
TTCTTCTACGGAGTGTACGACTATGGGGTCATGACCACCCTGCCCTCGGG
AGGGGCAGCGGTTATTGAACGTATGCAAGAATGGATGAAAGACACGCCGG
AGTGGGCGCACCACTACTCGGACCGACTCTTCGGTGCCATGGCGGAGGAC
CACCGGGCGCGCAGCTTCGTCCTCGCGTGGGCGACGTGCAAAGTTTTAGA
GCCGTTGCGTCTAATCGCTTGCATTGCCGTTACGCCTAGGGTGGCCCGAG
CGTTGGGACGAGCACCCGCCAAGGGGGTCGATGACGATGACGACGACGAC
GACTTGGAGGGGGCGGGGGCGGGGTCTGTAACGGACAAAAGTAGAGGGGA
TGGGAAAGAGGAGGGGGGTGGTGATCGCCGCTAGATGCAAGAATGGATGA
AAGACACGCCGGAGTGGGCGCACCACTACTCGGACCGACTCTTCGGTGCC
ATGGCGGAGGACCACCGGGCGCGCAGCTTCGTCCTCGCGTGGGCGACGTG
CAAAGTTTTAGAGCCGTTGCGTCTAATCGCTTGCATTGCCGTTACGCCTA
GGGTGGCCCGAGCGTTGGGACGAGCACCCGCCAAGGGGGTCGATGACGAT
GACGACGACGACGACTTGGAGGGGGCGGGGGCGGGGTCTGTAACGGACAA
AAGTAGAGGGGATGGGAAAGAGGAGGGGGGTGGTGATCGCCGCTAG
back to top