mRNA_S-latissima_F_contig1021.199.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1021.199.1 vs. uniprot
Match: D8LJ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ16_ECTSI) HSP 1 Score: 218 bits (556), Expect = 7.080e-57 Identity = 149/409 (36.43%), Postives = 211/409 (51.59%), Query Frame = 2
Query: 158 VLNIFLNFFRKMFGGMFEVDRENSIVSMTGQGKGNMPLKTARCLEHALRVCRENEFQPCDFSLVRARQALPGEDARGPNKHLILGGNVPAGATLGHLSNNYGIVVDKVEPEVLNFPAQHANCVGSRSSRSGSWEEKVAPGAEGRHHLLPPPKFSVPPWSG----PGERVKVVQLWGLTHCVNPAYERLVAVKSNQW-KQCLRLGACDVLSLGKSVRMR-QNSATVKLNEVLGVLSVEGNPVDVDGLFSRMVGFLSSNLPNSLATVDMANAGVMRHLATPCALPAIAEEAKVHMNLISLVPWWQKTQMLVLVPGGGSDPEVLRRVCGALHRMVKQWCDRNVGILLWPALIANAEQATERKR-EGNSKDLRHAFATSISEAAGIDLWLDGFHLRGMVVDATDHEAAQARLE 1363
VL FL FFR FG D ENS+VS+ +G AR LEH LRVCRE +PC+FSL+RAR AL GE L + +L +S+ +GI D V P VLNF A ++ G GS E+ +P P++S PPW+ + VKV QLWGL+ V PA++ LV+ ++N+ +CL LG+ L ++ ATVKL + V+ V G D +F + LS +P+ + VDM + G MR +AT A+ +A ++ I + W + ++V + GG L+ +C L V+QW +NV + L P L++ A Q R G KD+R+ F ++SEA G+DLWLDG LRG VVD +AQA+LE
Sbjct: 300 VLESFLAFFRACFGEDIVRDSENSLVSVVERGDCRTTESVARYLEHGLRVCREEGVKPCEFSLLRARSALTGETEDADLHVLCRTKGMATARSLCKISDCHGICADLVPPTVLNFSAP-SSVDGGGGGGCGSDGERRSPDL---------PEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRSVNRCLELGS-GAGDLSNAIPDNLAKGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDVIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEIKMFLVWLENSLVVQITGGNEGK--LQAMCQVLRHAVRQWRAQNVSVELSPMLVSKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDPCGQASAQAKLE 695
BLAST of mRNA_S-latissima_F_contig1021.199.1 vs. uniprot
Match: A0A6H5LC29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC29_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.380e-52 Identity = 157/475 (33.05%), Postives = 225/475 (47.37%), Query Frame = 2
Query: 116 MVAVRVQYEPEEEDVLNIFLNFFRKMFGGMFEVDRENSIVSMTGQGKGNMPLKTARCLEHALRVCRENEFQPCDFSLVRARQALPGEDARGPNKHLILGGNVPAGATLGHLSNNYGIVVDKVEPEVLNFPAQHANCVGSRSSRSGSWEEKVAPGAEGRHHLLPPPKFSVPPWSG----PGERVKVVQLWGLTHCVNPAYERLVAVKSNQ-WKQCLRLGAC---------DVLS------------------------LGKSVRMRQNSAT--------VKLNEVLGVLSVEGNPVDVDGLFSRMVGFLSSNLPNSLATVDMANAGVMRHLATPCALPAIAEEAKVHMNLISLVPWWQKTQMLVLVPGGGSDPEVLRRVCGALHRMVKQWCDRNVGILLWPALIANAEQATERKR-EGNSKDLRHAFATSISEAAGIDLWLDGFHLRGMVVDATDHEAAQARLEEQKAKLLSRLGM 1399
+VA V Y+ + VL FL FFR FG D E S+VS+ +G AR LEH LRVCRE +PCDFSL+RAR AL GE + +L +S+ +GI D V P VL F A + G GS E+ + G P++S PPW+ + VKV QLWGL+ V PA++ LV+ ++N+ +CL LG+ D L+ LG +V +R N VKL + V+ V G D +F + LS +P+ + VDM + G MR +AT A+ +A ++ + + W + +++V + GG L+ +C L V+QW +NV + L P L + A Q R G KD+R+ F ++SEA G+DLWLDG LRG VVD +AQA+LE + K+ LG+
Sbjct: 416 LVAFGVHYQERDLPVLEGFLAFFRACFGEDIVRDSEKSMVSVVERGDYRTTESVARYLEHGLRVCREEGVKPCDFSLLRARSALTGETEDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLKFSAPSSIDGGGDDGDCGSDGEQRSSGL---------PEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSSAGDLSNAFPDNLARGATVLFSCLRAAVEAATNARHVLLGPTVSLRLNLVAAPLNFGPKVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDIIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEVKMFLVWLEKRLVVQMTGGNEGK--LQAMCRVLRHAVRQWRAQNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGMELRGQVVDPCGQASAQAKLETEMGKMSQDLGV 879 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1021.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1021.199.1 >prot_S-latissima_F_contig1021.199.1 ID=prot_S-latissima_F_contig1021.199.1|Name=mRNA_S-latissima_F_contig1021.199.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=766bp MAPAQQLGEPSEEDEAQPTGEFDGMVAVRVQYEPEEEDVLNIFLNFFRKMback to top mRNA from alignment at S-latissima_F_contig1021:152542..162587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1021.199.1 ID=mRNA_S-latissima_F_contig1021.199.1|Name=mRNA_S-latissima_F_contig1021.199.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=10046bp|location=Sequence derived from alignment at S-latissima_F_contig1021:152542..162587+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1021:152542..162587+ >mRNA_S-latissima_F_contig1021.199.1 ID=mRNA_S-latissima_F_contig1021.199.1|Name=mRNA_S-latissima_F_contig1021.199.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=4596bp|location=Sequence derived from alignment at S-latissima_F_contig1021:152542..162587+ (Saccharina latissima SLPER63f female)back to top |