mRNA_S-latissima_F_contig1018.173.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1018.173.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI) HSP 1 Score: 284 bits (727), Expect = 3.220e-83 Identity = 154/243 (63.37%), Postives = 179/243 (73.66%), Query Frame = 1
Query: 148 MRAFYFFGAFGLLTAASVARAECDDLLN-LSLPLSGDTTLKLSSAAVDCTILADNELEEFVIEGGTLTLTGASTTKFTNLRFTVMDGAGLIFDFDTTEFGPNLGFERQDNFNGFMMQVMSGGSVEFTGELAATGLENMRSVFWNDVGGSIEFGSNVVFNECDSNVFRDNFGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFVTNGRSFDGHSGGAFSNTNGGTAIFRGTAVFSDNSCDES 873
MR+F F A GL +SV RA CDDL LS PL+GDTTL+LS A DC IL DNELEEF +EGGTLTLTG STTKFTNL+FT+MD AGLIFD+DTTEFGPNLG+E++D+F G+M+QV+SGGSVEF GE+AATGL NMRSVF+N+ GG+IEF N VF++ +NVFR N GR XXXX V NGRSFDGHSGG FSNT+GGTAIFRG A+FS N+CDES
Sbjct: 1 MRSFLFISALGLWATSSV-RASCDDLRTALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYEQEDSFGGYMVQVLSGGSVEFLGEMAATGLANMRSVFYNEAGGNIEFADNAVFDDIGTNVFRSNLGRLRFYGDATFTNNIYLAIDNEGGSVRIXXXXXXVENGRSFDGHSGGGFSNTDGGTAIFRGPALFSSNACDES 241
BLAST of mRNA_S-latissima_F_contig1018.173.1 vs. uniprot
Match: A0A6H5J6U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 6.490e-32 Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 205 RAECDDLLN-LSLPLSGDTTLKLSSAAVDCTILADNELEEFVIEGGTLTLTGASTTKFTNLRFTVMDGAGLIFDFDTTEFGPNLGFER 465
RA CDDL + LS PL+GDTTL+LS A DC IL DNELEEF +EGGTLTLTG STTKFTNL+FT+MD AGLIFD+DTTEFGPNLG+ R
Sbjct: 5 RASCDDLRSALSSPLTGDTTLELSGDA-DCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYVR 91
BLAST of mRNA_S-latissima_F_contig1018.173.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI) HSP 1 Score: 108 bits (270), Expect = 2.280e-21 Identity = 107/235 (45.53%), Postives = 130/235 (55.32%), Query Frame = 1
Query: 184 LTAASVARAECDDLLNLSLPLSGDTTLKLSSAA-VDCTILAD-NELEEFVIEGG-TLTLTGA-STTKFTNLRFTVMDGAGLIFDFDTTEFGPNLGFERQDNFNGFMMQVMSGGSVEFTGELAATGLENMRSVFWNDVGGSIEFGSNVVFNECDSNVFRDNFGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--FVTNGRSFDGHSGGAFSNTNGGTAIFRGTAVFSDNSCDE 870
L A++V ECDD+ +S T + L + VDC D EL IE G TLT+ S +F NLRF V +GA LIFD T GPN G + + F+ V GGS+ F G+ A+ + N+RSVF+N GSIEF + +FN + NVFR N XXXXXXXXXXXXXXXXXX F+ N FDG G A N GGTAIFR AVFSD+ CDE
Sbjct: 16 LMASTVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSG--QSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNR--GSIEFKDDSLFNN-NGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDN--GGTAIFRDDAVFSDHDCDE 243
BLAST of mRNA_S-latissima_F_contig1018.173.1 vs. uniprot
Match: A0A6H5JB77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB77_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.510e-21 Identity = 65/132 (49.24%), Postives = 78/132 (59.09%), Query Frame = 1
Query: 487 MMQVMSGGSVEFTGELAATGLENMRSVFWNDVGGSIE--FGSNVVFNECDSNVFR--DNFGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFVTNGRSFDGHSGGAFSNTNGGTAIFRGTAVFSDNSCDE 870
M+QV++GGSVEF GE+AATGL NMRSVF+N+ GGSIE F + F +N++ DN G FV NGRSFDGHSGG FSNT+GG AIFRG A+FS N+CDE
Sbjct: 1 MVQVLTGGSVEFLGEMAATGLANMRSVFYNEAGGSIELRFYGDATFT---NNIYLAIDNDG----------------------GSVRINGEATFVENGRSFDGHSGGGFSNTDGGIAIFRGPALFSSNTCDE 107 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1018.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1018.173.1 >prot_S-latissima_F_contig1018.173.1 ID=prot_S-latissima_F_contig1018.173.1|Name=mRNA_S-latissima_F_contig1018.173.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=384bp MRAFYFFGAFGLLTAASVARAECDDLLNLSLPLSGDTTLKLSSAAVDCTIback to top mRNA from alignment at S-latissima_F_contig1018:68402..82171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1018.173.1 ID=mRNA_S-latissima_F_contig1018.173.1|Name=mRNA_S-latissima_F_contig1018.173.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=13770bp|location=Sequence derived from alignment at S-latissima_F_contig1018:68402..82171+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1018:68402..82171+ >mRNA_S-latissima_F_contig1018.173.1 ID=mRNA_S-latissima_F_contig1018.173.1|Name=mRNA_S-latissima_F_contig1018.173.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2304bp|location=Sequence derived from alignment at S-latissima_F_contig1018:68402..82171+ (Saccharina latissima SLPER63f female)back to top |