mRNA_S-latissima_F_contig1017.169.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: D8LBM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM9_ECTSI) HSP 1 Score: 401 bits (1030), Expect = 8.580e-128 Identity = 293/691 (42.40%), Postives = 345/691 (49.93%), Query Frame = 1
Query: 73 ICAYEDGNEQPRLLVVNETRLFSLRAGLGAAGDRYGLEHLPAESVPAGAELVSCKVVPTRRGDVGGSGGSLHRDDPLSPPMRYGTRGMVCLAMLTPSSAGLPQLDRATKPPGDAGCVPGLRPPAPSSTTPTATEPHPACTALLNVYILGGERRFEVERALQRQPQQLPLSYSPAGVAHATVWRNVAPPSVDDAATPSFADS-------------------------YRRRVERGDAVLVWDQDGVVHGYTRWGGFQEGDALRGGD----------------------GSSGVVCGGAVLAAESRESLEALIPELRGINGPVLSLSVETVIGGGG--ARRRQVMAGCADGVRRVSL-DVSGGRTEATVGFANGPVSAVALNTRPRLLPFDRHADDSWGGDVVAGFACTRLGMVAWLVEGGTDAVASEEPRWATDSPQLSDA-----DKLICIGCDDFCRDGSTSVAVGTYLGKVKVYSAAAGPDTAAA-ADTREDLEEPGGADQGDQVLGATWV-----------DDDECFADGHP-----RQGDSTSPRLSG-----TDRHY---RANERPGARASTGSR------LLERWQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPEDTDS---VASRSDDD---------AVGVPVLGVEIHNVGAA 1851
IC Y RLLVVNET L LRAGLG AG+R+GL LP ES+P A++V+C VV TRRGD GS LLNVY L GER EV+RAL+R+PQQL L Y P G+AH TVWR+VA A P+F R RVERGDAVLVWDQ G+VHGYTRW G GGD ++G V ++L AESRESLE L+PELRGI+ PV L+ + V G G RRR+V+AGC + R VSL D + GR E V GPV AVALN RPR +P+DRH DD WGG+V AGFACT L M+AWLVEGG A A RW T S L +A D++ C+ C DF RDGST+VA+GT LGKV VYSA P+ LEE G D G + G V ++DE +P R+GDS SPR SG DR + R +R G L RWQRD+PH V I GDFNHDGV E+VV TQYGVHVFRPDYR EASR AKT+HALK LQP++ D ++S SD+D G G+E H VGAA
Sbjct: 21 ICRYS------RLLVVNETGLLKLRAGLGPAGNRFGLGQLPVESLPEVAKVVACTVVRTRRGD-----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXLLNVYPLDGERGSEVDRALRREPQQLVLPYMPVGMAHTTVWRSVA-------ALPNFVGGGXXXXXXXXXXXXXXXXXXXXXXXXXRVRVERGDAVLVWDQSGMVHGYTRWEG--------GGDRRTXXXXXXXXXXXXXXTXXXXXATGHV---SILTAESRESLETLMPELRGIDSPVSCLAFDAVEEGDGWARRRRRVLAGCMESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRWGGNV-AGFACTELDMLAWLVEGGNAAGAGVGGRWYTGSLPLVEAGGGGGDQVTCMECADFFRDGSTAVAIGTNLGKVIVYSAE--PNNGGGEGGLAGGLEEVGRVDAGGRSGGEGLVFGLEVDGDDSSEEDEAGCSSNPVQPPSRRGDSVSPRPSGLASSSADRQFHSRRVADRQGXXXXXXXXXXXRPLLTARWQRDLPHGVLRIAFGDFNHDGVRELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPKEDDGGDFMSSASDNDHDGRHEGSRPRGADASGMETHGVGAA 675
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: UPI001C1CE0F7 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1CE0F7) HSP 1 Score: 62.4 bits (150), Expect = 1.900e-7 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPE 1764
WQR HP++ I S D N DG+ E++V TQYGVH+ +P+ + +L K L + L E
Sbjct: 128 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNLNKE 187
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A2P4PDC6_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=A0A2P4PDC6_RHIID) HSP 1 Score: 62.4 bits (150), Expect = 8.240e-7 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPE 1764
WQR HP++ I S D N DG+ E++V TQYGVH+ +P+ + +L K L + L E
Sbjct: 256 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNLNKE 315
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A015LUU7_RHIIW (Uncharacterized protein n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0A015LUU7_RHIIW) HSP 1 Score: 62.4 bits (150), Expect = 1.490e-6 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPE 1764
WQR HP++ I S D N DG+ E++V TQYGVH+ +P+ + +L K L + L E
Sbjct: 391 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNLNKE 450
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A397VLN0_9GLOM (Uncharacterized protein n=7 Tax=Gigaspora TaxID=4873 RepID=A0A397VLN0_9GLOM) HSP 1 Score: 61.6 bits (148), Expect = 2.500e-6 Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPE 1764
WQR HP++ I + D N DG+ E++V TQ+G+H+ +P+ + L K L LK+L+ E
Sbjct: 375 WQRSFSHPIYKIANLDLNQDGIEELIVATQHGIHILQPNLEKAKVELLKILEELKSLKNE 434
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A2Z6RY76_9GLOM (KICSTOR complex protein kaptin n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RY76_9GLOM) HSP 1 Score: 61.6 bits (148), Expect = 2.590e-6 Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTLQPE 1764
WQR HP++ I S D N DG+ E+++ TQYGVH+ +P+ + +L K L + L E
Sbjct: 388 WQRSFTHPIYRIASLDLNEDGIEELIIATQYGVHILQPNLSKAKEQLLKILDEIDNLNKE 447
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A397SVU6_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SVU6_9GLOM) HSP 1 Score: 60.8 bits (146), Expect = 3.710e-6 Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKTL 1755
WQR HP++ I D N DG+ E++V TQYGVH+ +P+ + RL K L+ + L
Sbjct: 323 WQRSFTHPIYRITGLDLNEDGIEELIVATQYGVHILQPNLYKAKERLLKVLNEIDIL 379
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Match: A0A367J5U2_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J5U2_RHIST) HSP 1 Score: 56.6 bits (135), Expect = 9.760e-5 Identity = 20/56 (35.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1585 WQRDVPHPVFGIISGDFNHDGVNEMVVVTQYGVHVFRPDYREEASRLAKTLHALKT 1752
W+R +P++ I+ D N DG++E++V T YGVH+F+P+ ++ RL + L +++
Sbjct: 370 WKRQFAYPIYRIVHLDLNRDGLDELIVTTMYGVHIFQPNSKKSRDRLLEVLQYVES 425 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1017.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1017.169.1 >prot_S-latissima_F_contig1017.169.1 ID=prot_S-latissima_F_contig1017.169.1|Name=mRNA_S-latissima_F_contig1017.169.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=621bp MFTEEEYFALPSCNAKHCICAYEDGNEQPRLLVVNETRLFSLRAGLGAAGback to top mRNA from alignment at S-latissima_F_contig1017:136719..139510- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1017.169.1 ID=mRNA_S-latissima_F_contig1017.169.1|Name=mRNA_S-latissima_F_contig1017.169.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=2792bp|location=Sequence derived from alignment at S-latissima_F_contig1017:136719..139510- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1017:136719..139510- >mRNA_S-latissima_F_contig1017.169.1 ID=mRNA_S-latissima_F_contig1017.169.1|Name=mRNA_S-latissima_F_contig1017.169.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=3726bp|location=Sequence derived from alignment at S-latissima_F_contig1017:136719..139510- (Saccharina latissima SLPER63f female)back to top |