mRNA_S-latissima_F_contig1016.155.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1016.155.1
Unique NamemRNA_S-latissima_F_contig1016.155.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1016.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1016contigS-latissima_F_contig1016:3416..11269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size198
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1016.155.1prot_S-latissima_F_contig1016.155.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1016 3416..11263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.9499261-CDS-S-latissima_F_contig1016:3415..34601622815376.9499261-CDS-S-latissima_F_contig1016:3415..3460Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1016 3416..3460 +
1693924846.3738701-CDS-S-latissima_F_contig1016:3415..34601693924846.3738701-CDS-S-latissima_F_contig1016:3415..3460Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1016 3416..3460 +
1622815376.9633179-CDS-S-latissima_F_contig1016:11110..112631622815376.9633179-CDS-S-latissima_F_contig1016:11110..11263Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1016 11111..11263 +
1693924846.3829362-CDS-S-latissima_F_contig1016:11110..112631693924846.3829362-CDS-S-latissima_F_contig1016:11110..11263Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1016 11111..11263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.9758186-UTR-S-latissima_F_contig1016:11263..112691622815376.9758186-UTR-S-latissima_F_contig1016:11263..11269Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1016 11264..11269 +
1693924846.3949745-UTR-S-latissima_F_contig1016:11263..112691693924846.3949745-UTR-S-latissima_F_contig1016:11263..11269Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1016 11264..11269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1016.155.1

>prot_S-latissima_F_contig1016.155.1 ID=prot_S-latissima_F_contig1016.155.1|Name=mRNA_S-latissima_F_contig1016.155.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=66bp
KRPCDLLWFVCIVTQETHQQSTRRTIQTLFLGGVQVAAVRSSLSRRGDDA
TVPRATLQPVRFGFG*
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mRNA from alignment at S-latissima_F_contig1016:3416..11269+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1016.155.1 ID=mRNA_S-latissima_F_contig1016.155.1|Name=mRNA_S-latissima_F_contig1016.155.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=7854bp|location=Sequence derived from alignment at S-latissima_F_contig1016:3416..11269+ (Saccharina latissima SLPER63f female)
AAACGACCATGCGACCTGCTGTGGTTCGTCTGCATCGTAACTCAGGTGTG
TGATATGCCAAGAGCATTCCCATATATCAAGGACAACAGGAGAAGAAAAG
TCTCACTGAGGCATTCACTATACCATCATACGCGTGGCCAACTGCAGACT
ACCAACCTGCAACCACCCTGAATACCAGCCTGAGTGGACCCGTGACTTGC
CCTACTTACTACATCTTCAGGGAGTTAATACATGTTCATAAAGCAAACTA
CAGCAGAGGATACGATTGAGAGGAGTGATGCCTTCATGAGACACCTACCA
GAGGTACAACATAGTTCATAGATAGCGATATGGTAGAGACGGAACATTTG
ACATGCATACGTGACTCTGTACAACGATTGTACTTTTCCACATATTGACT
GCTATTAATATTTCGTCTCAGAGTATTCATCACCTTGTTGTAGGACCGAC
CATCCTTTGCGAGAAACATAAAAAACACACACAGGTACTGATATTGCCCG
CCACACGAGAACCCTGCGGACCTACTACAGTACATACTGTTGCCCCACTG
GTACTTACCACCACTACCTGCTCACTGCTGTAATATATGTGGGCTCAGAA
ATTGACGGATAAAACTACTACTCATCTCGAAATTCCCCATACGGTATAAA
ACAACTCATCTTACGGACCTCTGTCATTAGTCCTACTTTTTCCTCAAAAA
CAATGCTCACACACACACTTTTCCACACACCATATTATACAGCAATACGT
AGTATCGGCCCGCTCATTTAAAAAAATTGAACGGGATAATTTACCATACA
TACGTATTAATAGGCAACTAAATCATACGACCTACCAGCAAATCATCCAA
ATTCATGTTGCCTTTCCTCGAAAAATCTTCACAACACTCCACACTATCTT
TCCCCGCCTGAACAAAATCACCCCAGGTACTAATAAATACCTGGTAGAAA
TACAAAATACAAACAACTAACCCCAGTAATTCATAGCGATTTGCAGCTAG
AACTCACCGCTATCGTTTACAGTGTACATACGCAGTCAGTACGGTAAGAT
ACCCCTGCCAGCCAAGGGCCATCTAGACAGACATACTGGACCGGTCCTGA
TAGGTGAAGACAATGATCCCTTCCTATGGCTGACCGGAGCCTAAAACGTA
ACCCTATGTATGCAACTCAAATCATAAGCCTACCAGCAAATTATCTACAA
GCCAACCTTTTCCCGAAACAATCTTCAAACAAGTATCACACAACATGTCC
GCATGACACTATTATAGATGCCCCTACCAAATCACCCGATACTAAAAATA
CAAGCAACCTCTATACAGTAGTAATACATATCGATCGACGCTGTAGAACT
CACACTATCATGTTACTTTTTACACATACATACATGCAAATCCACACCCC
CGTAGAATTGCCGGCGTGCTGGTGGCTGTATACTTCACGTACTTTTGCAC
CAATCTTTTACCGCATTGCTCCCACCCGACCTGATCCCACCCACCCGATC
TGATCCCATTTGGCCACCCTGCTCCCACCCACAAGTTGCAGAATATAATC
AGCCCCCCCATGAGCCGCCTGATGCCCACCTTGCACCTCGATCCCATTTG
GTACCCATGTAGGCCATACATATCTACAACAACTCCTGCTATAATATAAC
CGTATTGAATATAGGTGCAGTTCGTTAGACCGCACAGTAGGGCAGTTCTT
CCGGAGCCCGGCATATCCAAAGGCCCATCAATGCAGACATACTGTACTGG
TCACTCGTAAGGAAAAATTAATAAAGTTCTAAACTTAGTCAATGCTAGAC
TAAAGAACTGATCCATCCTATGGTACCTTTGCCTAACCACCATTTCAGTG
TTTACATCCTAGTAACACGGGCTCTCAGGACCGAAACATTTCAGTCGCAA
CATGAGAAAACATGCCTCGATCACACCCGGAATAAGAAAGTCAGCCTGAT
GGCCTGATTCCCAAGTCCCTATGATAGGGCCGGCAACCGTACATTGGTCA
AGCTATAGACATTATGTACATACTCACATACAAACCAGAGGTTCTGCGAA
TCAAACATTTTCACAAACTACCGACACAACAATTAAATCCTCAAAAAATT
GAAAAATAAGTTGCACTCAACCAGTCAGTCGCAATGCAAGAACATCGCCT
ACCCTTGATCATAAAATTTCATACCAACTAACCGACGCTCTCCTTTTGTT
TTTCCCCCCCCAAAATACCCCCCCCCCCCCCCCCCCTTCCCATTATACGA
AGAGAATCTTATACGAGTATTATAGTCGTATAAAAACCATCGCCATATTA
AATATTCAAAAAACATTGCATAAAGCGGCAACAAACGTGACATATCATCA
TTATCTCTACAACTCATCCACCATCCACTTTTTATAAAATACACAAACTT
AACAAAAAATACACCTTATTTCGGACGCCATGTTCCAAGGAACCCTCAGG
TTTGATTAGGTGCACCTCGGCCCTATCAATATATCCGTGGCACCACACAG
CAGCTGAAAATAAAAACACAGCTCATTCCCCGAGAGCAAAATAACCCGCC
TCCCCCGCCCCCCCCCGGCCTCCCCTACATAGCACACACTATTGGCATCA
CATATTGGCCTTCTGCATTCATCTATGACACTTCTATCCTCCCAAACCAA
CAACTTTCTTCTAACGAGAGAATCTTATATACGAATAGCTAGTCGTACAG
AACCCATCACACTAGTAAATTCGACAACACACCAACATTGCATAAGATCA
CCAACAAAACGGACATATCATGTTATCTCAATTCATACCACCATCCACTC
CATCAAAAAACATAAAAACTTACTAACTACCAAACAATACACCTGAATTC
GGGAACGGCCATGGTTCCAGTAACCCCCAGGTTTGATTAGGTGCCACCAT
CGAGCCCTATCAAATACACCAACCTGTGCATCACAACAGCAGCAGCTGAA
AATGCAAACAGCATCTCATTTCCCTAATAAGGCACTCCAATTTTCTTACT
AAAATACGCATATCACGACTAAACACCAAGACTTAAAACGTTTATAAAAA
CAACAACTACTACGCTCTCCATCCCTACCTCCACCCACAATGTAGTAAGG
ACGTCAGGACCTTGAATACACAACACAACCATACAATAACCCCTCCCCCC
CCCCCCCCCCCCTCCCTGTCCCCCTTCCCCCGCTCCTAGCCCCCCCGTCC
CCCCGGCCCCCCCCCACCCTCCTCTAAAAAACTCTAACAACACAATTACT
TGATGTAGATTTATAACGATTACCTTGCCAAATATCTACCTCTTCCTCTA
CCTAATGAGAATAAACCACGTAATATGTGGTAACGACTTATTCTAAGGAA
TCAAGTAGTAACTACCTCCGTACCCATCCATCACTAATCCCACACGAACT
CTATAAAATAACACCTAGAAACAAACATTCTACACAGCTCACACAAGTTA
ATTATCTATATTAAATCGTAGAACTCACAGCTGACGTATTTATATTCGGG
AACGCTATGGTTTCCAAGGAAACTGCCGGTTTGATTTATGTGCCACCTCG
AGCCATAGCGATACAAACCTGGCAGCACTAACAAGCAGCTGGAACATAAA
AAACAGCAGCTCATTCCCCGAAAAAACTTCCAACTTCATAAATAATACCT
CATAAAAATCCAGCATATCACCGACCAAGCAGACCAAAATTAAACACCTT
TCATATAAACCAAAAACATTACGTAACGACGACGCCCCCCCACCCACAAT
GTTGTACGGACGTACGGACCTGTGAATTACACTAACACGACCATAACATA
TGGAGGCCACCCCCCCCCGCCCCCCCCCCCCCCCCCTCCTAAAAACCCCC
TACCCCCATCCCCCCCTGTCCCCCTGTTCCCCGCCACCCACCCTCGTCTA
ACACACATTTTGTGATATAGAATGTACTCGATTTACTTTACCAAAGACAT
ATCATACTGTCTCCTCTATTCGGGTATATAGTTCAGTGTCTCGAATGACA
TGGGATACCCTTGTTCCTTGTCCTGCTGACCCGGGTAGTATCCAGGGGAG
TCACTGAACTATATCCTTAACGAGGAATACACACATAACACGCGCGAACG
GCTTATTATAAAATTGAGTAGTAACTACCAGGTTCCTAGTACATCACGAA
GCCTACACCAATACCACAAATAACACATAGAACAAAAATTCTACGCAGCT
CGCAAAGTTGAGTATCTACTATTCAATCGGTTGAACCCACAGCTGACGTA
TTTATAATAATTTTATTTAATAATGCCGAGGAACGTTCGGTGTATTTGAT
GTAGACACGTAGTCCAGAGTTTAGGGGGCGTGGTGGCGAGTGGGATAGAC
ACAGCGTGTCCTCTGCCAATGGCCTACTGTAGATCTGTGGTCCAGAGTTT
AGAGGGCGTGGCGGCGAATGGGGTATTTTCTAAGGGTGATCGCTTTTTCT
GGTGCTGACCGGCGCATTTCTCTCCGCATTCCTCGCCAGTGGATCTTGCC
ACTTTGTTGTTGTTTTCTTCGCATTGCTTGACAGATTTAACCTCCGAGCT
GCCACCCGTGAGTTTCGGTATCTGCATTCCGACCGAAAAGACGTGGGGTT
TTCAGCGAAGCTGAGGCTGGACCGGATAAATAACTCGCTCCGTATTCTTG
GACCTCACCTAAAGAAATTATCTGTGTTTCTTGCCTGGAGGCGCCAACTG
TACATGTACTTTAGGGCTCGTTCGTACCACAAGGCCGCCGAACATATACA
GACAATTCCACGATGGGAGAAGTCAGGTCATTTCACCACGTTGGTGGTGA
ACGACTGGTCCACGTGGATAAGCGGCCTTATGATCAACTTTCAGTTTGTT
GCCGCCGAGCGGGTGCTATCCAATCCTCTGCCAGACGCCGGCGAAACGCT
CTTGGCAGAGCTGAAGAGCGCCTTGGTTTCGCGTGTACACGCTTCGCTGG
TCCTACAACGTTTGCTACGAAAGTCCCTACTTTACATCCGCTGGACAAGG
CGGAAAAGGCGAATGTATGGCGTCCACCGCATGTACCGCAAGTATCAAAG
CTGGATCACCCCTGGCCCGATTGCTACCGCGTGGCCCGAACCCCCTAAAA
AGCGTATTGCTGGCAGTCGTAAAATCACGGACTTTTTCTCCAAGCCAAAG
CGCGCCAAGGCTGTATAGCCCCCCCATCTTTTTGCCGACCCGCACACTAA
AAGTAGGTTTTTGTTTCCTCCATTTCGGAAGATGGTACTTGTTTTATCTC
GAGTCCGGCCACGGTTCCGTCAACCCCATCTCAATCTCATCATAAATATC
ACTTTGCATTTTCGCACCCGCCGGGTGGCTCTCGTACCACACGCCAAACT
TGCGAAACACTTCCTCTTGCGAGACACCGACAAATCGTTGTCTAGCATTG
ACGCGGGACGTGTCTGCCCCACAGATGTCTCCCAACTCTATCAAGTGAGA
GGATACGTGATCGTAAACGAGACCATTCGAGTCTTCGAGCCACGTGTGGA
AGCTCTCGCTGCCGTCGGTCCACGGTTTCCCCTCTAAAATCCTGTGTCCG
TAAACAATGTGTATGTCGGTGTAATCTCTCCAAAAGTGACGGTTACGTGT
TCCGGTTGGGAGTTTAGGTAGTCTGTTCGACTACCGAGTACAGAGTACGT
CTTGTGTTCTACTTGCGAGGACGTGTGCTGCTTAGCTCAGTCGTCTCTCT
GTCTCTCTCTCTTGTATCTCTTGATCCATACACACCACGCGGGTGTGCGA
CAACCGATAATACACGTATAAACTTATCGAGCCATTCGGCTGCTTTGTGC
AAGTCGACGTTAACAGACGCGGTTGTACCAACACTCTAGAGAAAGGTACC
TACGTACAGCCATGGCTGCGGATGACATGGAGAAGCAACTCGCCGAATTG
AGACAGCAATTCGCGGATGCGAGACGAGAAGACGCTGAGGAAAGAGAGTC
CCGTGCAGCTGAGGAAGCGGCACGCGCAGAAGTTGCCGAGAGGGCATCTG
CGGAGCAGCAACGGCAACTCCATGAAATGATGGAGAAGCTGACTCAATTT
ATGAGTGGCGGATTGGCGCAAGCGGCGCCAGTCGGAGGACCAGGGCAGGC
GCAAGCGGCGCCAGCCGGAGCCCCAGGACAGGCGCAAGCGGCGCCGGTCA
GAGGCCACGGACAGGCGCAAGCGGCGCCAGTCAGTGGGAGGACGCAAGCG
GCGTCTGCGGAAGGTGGCGAGGTAGTAAATCCTGCGTCATCATCCCCACA
ACACCTCCACGCCGAAGCTGAGAGCTTTACTCTCGATAGACTGACCCCCT
CTACTCCCGACACAGAGCGCCTGTCGTCAGCCTTGTCGGCATAGTTGGAA
TCCGTGTACACCGACAGATCAAAAGTCGGACTCCGTTCGAACGTAAGGCT
CAGATCCTTCGTGCCGAGCAGATACTTGATGATCTGAAGTAACGCCTGCC
AGTGCCTCTCGGTCGGGTCGTGGGAGTGGCGCGTGAGGACACGCGTCGGG
TTCGCGATCTCCGGCCTAGACCAGACGACCAGCCACAACAACGCGCCCAC
GGCCTCCTTGTAAGGCCACGTACCACCAGGCTCGCCCTCCTCGGTCCTAA
GTTTGCACCGGGGGTAGCAGGGTAGCGAGCGGTCGTTGTCACATCAAAAC
GTCTCGCGAGTGTTTCGATGAATGTCTTTTGGTTGATCTTCGTTACACCC
TTAGCGACGTCCTGGGTAACGGCACACCCCGTGAAGAACGACAATTCTCC
CAGGTCAACCGTGGTGAAATTCTCGTTGAGCGTCACAAGTAACTTGTCAA
CCTCAACCCGAGGACCTGCGACAGCCATGTCATCCACATGGACCGCCAGG
ATCAGCATTACCACGCCCTTCACGATCTTACGAAATACGCAAGGGTCGGT
CTTGCACTGCTCCATGCCGTGTCTCTTAACCAGCTTTTCAACAAGCAAGT
TATTCCACAGCAAACCACTCTGCTTAAGGCCATACAGCGCCTTCAGGAGC
TCCACGTACTTGCCAGACAGTTCACCACATCCACCCGGAAGCTTCATAAC
TATCTTGCAGTCTAGCGGGGCTTGAGTGTATGCCTGTTTGCTATCGAAGT
GGTGAACCTTGTACCCCAACTGGTTGGCTGCTGCGAACGTTGTCTTGATA
GACGTTGCTGTGGGTGTAGGCGCGGCAGTCTGGTTGTAATTCACACCTTC
TCGTTGCATGAATCCTTTGGCTACCAGTCTAGCCTTGGGAGTAATGATAT
TCCCATCCTTATCCGTCTTCAGTGAAAGCACCGATCGAGAGTTGATTGCC
TTGACCCCCTTGGGTAAACCGGCCAATACCTTAAACGTTCCCGAATCTTT
GAGGCCCTCTAGTTCTTTGTTCATGGCCCATTGGTATGCCCCCCTGTAGC
TAGACTTCTCAACGCCCGCTACCGACACCGGAGGTATTTCCGCCTCAGAC
ACTGGGCCAGAAGGCATTTCGAAATTTGATTCCAACTCATACTTCCCAGA
GGGTTCCATGGCGGCCAGGGCGTAATCGTCGGTGCCGACCATGTTGCTCA
ATAGCGATAGGACGTTGTTGGCGGACTCGTGTGCGTCAGGAACCGGCAGA
CTCGCGCCAAGCTCTTCCACTAACTCGTCGCAGTCGTATCCTCCAAGCAC
ATTCTGAGGTCCCAACTTGTCCGCCGCTCCCGTTTCTTCGTCCAGGAAAC
GCACCAGCAAAGCACGCGCCGCACCATCCAGACCCTGTTCCTCGGCGGCG
TCCAGGTAGCGGCTGTTCGGTCGTCGCTGTCTAGGCGAGGTGACGATGCC
ACCGTGCCGCGCGCAACTCTTCAACCTGTTCGCTTCGGCTTTGGGTAGCT
CGGC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1016:3416..11269+

>mRNA_S-latissima_F_contig1016.155.1 ID=mRNA_S-latissima_F_contig1016.155.1|Name=mRNA_S-latissima_F_contig1016.155.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=396bp|location=Sequence derived from alignment at S-latissima_F_contig1016:3416..11269+ (Saccharina latissima SLPER63f female)
AAACGACCATGCGACCTGCTGTGGTTCGTCTGCATCGTAACTCAGAAACG
ACCATGCGACCTGCTGTGGTTCGTCTGCATCGTAACTCAGGAAACGCACC
AGCAAAGCACGCGCCGCACCATCCAGACCCTGTTCCTCGGCGGCGTCCAG
GTAGCGGCTGTTCGGTCGTCGCTGTCTAGGCGAGGTGACGATGCCACCGT
GCCGCGCGCAACTCTTCAACCTGTTCGCTTCGGCTTTGGGTAGGAAACGC
ACCAGCAAAGCACGCGCCGCACCATCCAGACCCTGTTCCTCGGCGGCGTC
CAGGTAGCGGCTGTTCGGTCGTCGCTGTCTAGGCGAGGTGACGATGCCAC
CGTGCCGCGCGCAACTCTTCAACCTGTTCGCTTCGGCTTTGGGTAG
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