mRNA_S-latissima_F_contig1011.139.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1011.139.1
Unique NamemRNA_S-latissima_F_contig1011.139.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1011.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1011contigS-latissima_F_contig1011:165666..165975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.1472538-CDS-S-latissima_F_contig1011:165665..1659741622815373.1472538-CDS-S-latissima_F_contig1011:165665..165974Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1011 165666..165974 +
1693924844.087005-CDS-S-latissima_F_contig1011:165665..1659741693924844.087005-CDS-S-latissima_F_contig1011:165665..165974Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1011 165666..165974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1011.139.1prot_S-latissima_F_contig1011.139.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1011 165666..165974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1011.139.1

>prot_S-latissima_F_contig1011.139.1 ID=prot_S-latissima_F_contig1011.139.1|Name=mRNA_S-latissima_F_contig1011.139.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=103bp
LCGRGACPSARHPPSGATDPALAEAEHSSSSGSSSSSGCSTSFKKERRIR
VLFRSFPRCPSRGKRGLPRPVTTILRAGSPGRVHTLRMQRPFFLVCTVCC
PCP
back to top

mRNA from alignment at S-latissima_F_contig1011:165666..165975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1011.139.1 ID=mRNA_S-latissima_F_contig1011.139.1|Name=mRNA_S-latissima_F_contig1011.139.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=310bp|location=Sequence derived from alignment at S-latissima_F_contig1011:165666..165975+ (Saccharina latissima SLPER63f female)
CTGTGCGGCCGGGGCGCTTGCCCCTCTGCACGGCATCCGCCAAGTGGTGC
TACCGATCCCGCCCTAGCAGAGGCGGAACACAGCAGCAGCAGTGGCAGCA
GCAGCAGCAGCGGTTGTAGTACGAGCTTCAAGAAGGAACGACGCATTCGT
GTTCTGTTTCGAAGTTTTCCAAGATGTCCGTCAAGGGGGAAACGAGGGCT
TCCTCGTCCAGTGACCACGATTCTAAGGGCGGGAAGTCCTGGGCGCGTCC
ACACTCTACGGATGCAACGACCTTTCTTCCTGGTGTGCACGGTGTGCTGC
CCCTGTCCGA
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1011:165666..165975+

>mRNA_S-latissima_F_contig1011.139.1 ID=mRNA_S-latissima_F_contig1011.139.1|Name=mRNA_S-latissima_F_contig1011.139.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=618bp|location=Sequence derived from alignment at S-latissima_F_contig1011:165666..165975+ (Saccharina latissima SLPER63f female)
CTGTGCGGCCGGGGCGCTTGCCCCTCTGCACGGCATCCGCCAAGTGGTGC
TACCGATCCCGCCCTAGCAGAGGCGGAACACAGCAGCAGCAGTGGCAGCA
GCAGCAGCAGCGGTTGTAGTACGAGCTTCAAGAAGGAACGACGCATTCGT
GTTCTGTTTCGAAGTTTTCCAAGATGTCCGTCAAGGGGGAAACGAGGGCT
TCCTCGTCCAGTGACCACGATTCTAAGGGCGGGAAGTCCTGGGCGCGTCC
ACACTCTACGGATGCAACGACCTTTCTTCCTGGTGTGCACGGTGTGCTGC
CCCTGTCCGCTGTGCGGCCGGGGCGCTTGCCCCTCTGCACGGCATCCGCC
AAGTGGTGCTACCGATCCCGCCCTAGCAGAGGCGGAACACAGCAGCAGCA
GTGGCAGCAGCAGCAGCAGCGGTTGTAGTACGAGCTTCAAGAAGGAACGA
CGCATTCGTGTTCTGTTTCGAAGTTTTCCAAGATGTCCGTCAAGGGGGAA
ACGAGGGCTTCCTCGTCCAGTGACCACGATTCTAAGGGCGGGAAGTCCTG
GGCGCGTCCACACTCTACGGATGCAACGACCTTTCTTCCTGGTGTGCACG
GTGTGCTGCCCCTGTCCG
back to top