mRNA_S-latissima_F_contig1011.136.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1011.136.1
Unique NamemRNA_S-latissima_F_contig1011.136.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1011.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1011contigS-latissima_F_contig1011:141588..142201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.073803-CDS-S-latissima_F_contig1011:141587..1420881622815373.073803-CDS-S-latissima_F_contig1011:141587..142088Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1011 141588..142088 +
1693924844.0542517-CDS-S-latissima_F_contig1011:141587..1420881693924844.0542517-CDS-S-latissima_F_contig1011:141587..142088Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1011 141588..142088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.0857046-UTR-S-latissima_F_contig1011:142088..1422011622815373.0857046-UTR-S-latissima_F_contig1011:142088..142201Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1011 142089..142201 +
1693924844.0679958-UTR-S-latissima_F_contig1011:142088..1422011693924844.0679958-UTR-S-latissima_F_contig1011:142088..142201Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1011 142089..142201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1011.136.1prot_S-latissima_F_contig1011.136.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1011 141588..142088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1011.136.1

>prot_S-latissima_F_contig1011.136.1 ID=prot_S-latissima_F_contig1011.136.1|Name=mRNA_S-latissima_F_contig1011.136.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=167bp
AVPPTLPQPHAWQRKQTRPVTHTAFICCCLCHHSISSLPPSSPTRGHKNA
QKRSYSLTQAATVGKTSQIQNSGGGKGVPRGQPVWNYPSPSYISFTTYRH
LSYYDQKTRFSQLKLTPPCARPIGTSHRHPSYYPTIISAQSVKTKTCLSQ
WRRGKPSQRQGKDKAG*
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mRNA from alignment at S-latissima_F_contig1011:141588..142201+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1011.136.1 ID=mRNA_S-latissima_F_contig1011.136.1|Name=mRNA_S-latissima_F_contig1011.136.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=614bp|location=Sequence derived from alignment at S-latissima_F_contig1011:141588..142201+ (Saccharina latissima SLPER63f female)
GCCGTCCCACCGACCCTCCCTCAACCGCACGCCTGGCAACGAAAGCAAAC
ACGCCCAGTCACCCACACAGCATTTATTTGTTGCTGTTTATGTCATCACA
GTATTTCCTCGCTGCCACCATCTAGTCCGACCCGTGGTCACAAAAACGCA
CAAAAAAGGAGTTATAGTCTTACGCAGGCCGCTACCGTAGGAAAGACGAG
CCAAATACAAAACTCGGGCGGAGGGAAGGGCGTTCCACGAGGACAGCCAG
TATGGAACTACCCTTCACCTTCGTATATATCGTTCACGACGTACCGGCAT
CTATCGTACTACGACCAAAAAACGCGGTTCAGTCAATTAAAACTGACACC
CCCGTGCGCCAGACCTATCGGTACGAGTCACCGGCACCCATCATACTACC
CGACAATAATCTCGGCCCAATCAGTCAAGACGAAAACGTGCCTCAGTCAG
TGGAGGCGAGGCAAGCCGAGCCAAAGACAGGGAAAGGACAAGGCGGGATG
AACACCAAAGCTACCGTGGCTCGATCCCGAAAGACTTTTCCCCTACCTGG
TCCTCCGTCTCGAAAGGGATGCGTGGGCAATGGTCAAATGACTAAGGCAA
GCAACAAATGAGTA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1011:141588..142201+

>mRNA_S-latissima_F_contig1011.136.1 ID=mRNA_S-latissima_F_contig1011.136.1|Name=mRNA_S-latissima_F_contig1011.136.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-latissima_F_contig1011:141588..142201+ (Saccharina latissima SLPER63f female)
GCCGTCCCACCGACCCTCCCTCAACCGCACGCCTGGCAACGAAAGCAAAC
ACGCCCAGTCACCCACACAGCATTTATTTGTTGCTGTTTATGTCATCACA
GTATTTCCTCGCTGCCACCATCTAGTCCGACCCGTGGTCACAAAAACGCA
CAAAAAAGGAGTTATAGTCTTACGCAGGCCGCTACCGTAGGAAAGACGAG
CCAAATACAAAACTCGGGCGGAGGGAAGGGCGTTCCACGAGGACAGCCAG
TATGGAACTACCCTTCACCTTCGTATATATCGTTCACGACGTACCGGCAT
CTATCGTACTACGACCAAAAAACGCGGTTCAGTCAATTAAAACTGACACC
CCCGTGCGCCAGACCTATCGGTACGAGTCACCGGCACCCATCATACTACC
CGACAATAATCTCGGCCCAATCAGTCAAGACGAAAACGTGCCTCAGTCAG
TGGAGGCGAGGCAAGCCGAGCCAAAGACAGGGAAAGGACAAGGCGGGATG
AGCCGTCCCACCGACCCTCCCTCAACCGCACGCCTGGCAACGAAAGCAAA
CACGCCCAGTCACCCACACAGCATTTATTTGTTGCTGTTTATGTCATCAC
AGTATTTCCTCGCTGCCACCATCTAGTCCGACCCGTGGTCACAAAAACGC
ACAAAAAAGGAGTTATAGTCTTACGCAGGCCGCTACCGTAGGAAAGACGA
GCCAAATACAAAACTCGGGCGGAGGGAAGGGCGTTCCACGAGGACAGCCA
GTATGGAACTACCCTTCACCTTCGTATATATCGTTCACGACGTACCGGCA
TCTATCGTACTACGACCAAAAAACGCGGTTCAGTCAATTAAAACTGACAC
CCCCGTGCGCCAGACCTATCGGTACGAGTCACCGGCACCCATCATACTAC
CCGACAATAATCTCGGCCCAATCAGTCAAGACGAAAACGTGCCTCAGTCA
GTGGAGGCGAGGCAAGCCGAGCCAAAGACAGGGAAAGGACAAGGCGGGAT
GA
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