mRNA_S-latissima_F_contig1010.131.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1010.131.1
Unique NamemRNA_S-latissima_F_contig1010.131.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1010.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1010contigS-latissima_F_contig1010:169743..170452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size359
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1010.131.1prot_S-latissima_F_contig1010.131.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1010 169743..170441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.58765-CDS-S-latissima_F_contig1010:169742..1698741622815372.58765-CDS-S-latissima_F_contig1010:169742..169874Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1010 169743..169874 -
1693924843.6911716-CDS-S-latissima_F_contig1010:169742..1698741693924843.6911716-CDS-S-latissima_F_contig1010:169742..169874Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1010 169743..169874 -
1622815372.5981202-CDS-S-latissima_F_contig1010:170225..1704411622815372.5981202-CDS-S-latissima_F_contig1010:170225..170441Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1010 170226..170441 -
1693924843.7358928-CDS-S-latissima_F_contig1010:170225..1704411693924843.7358928-CDS-S-latissima_F_contig1010:170225..170441Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1010 170226..170441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.61131-UTR-S-latissima_F_contig1010:170441..1704521622815372.61131-UTR-S-latissima_F_contig1010:170441..170452Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1010 170442..170452 -
1693924843.765141-UTR-S-latissima_F_contig1010:170441..1704521693924843.765141-UTR-S-latissima_F_contig1010:170441..170452Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1010 170442..170452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1010.131.1

>prot_S-latissima_F_contig1010.131.1 ID=prot_S-latissima_F_contig1010.131.1|Name=mRNA_S-latissima_F_contig1010.131.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=116bp
MAQALSASLPKAGEAAGMPADDAVRPGRGLGLVVGVVVAALTPDSVRPTE
GTIGHATHDELRQEIDRRLKLEDYTEYYCGLTNDPRVPGLALVKGGTPHY
DVLAAGGTRLAKVLAS
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mRNA from alignment at S-latissima_F_contig1010:169743..170452-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1010.131.1 ID=mRNA_S-latissima_F_contig1010.131.1|Name=mRNA_S-latissima_F_contig1010.131.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=710bp|location=Sequence derived from alignment at S-latissima_F_contig1010:169743..170452- (Saccharina latissima SLPER63f female)
TCAATATCGGAATGGCGCAAGCTCTCTCCGCTAGCTTGCCGAAGGCTGGG
GAAGCGGCTGGCATGCCAGCGGATGACGCCGTGCGGCCGGGGCGGGGGCT
GGGCCTTGTCGTCGGTGTGGTGGTGGCGGCTTTAACACCCGACAGCGTTC
GCCCCACTGAGGGGACGATTGGACACGCCACACACGACGAATTGCGCCAG
GAGATCGACCGCCGTCTGAAGTTGGAGGCGAGAAACCAAGCTCAAGCGCT
CAGCGCTATTCCTTATTCCTGCTCCCAGTAAACAGAAACGGCCGTCCACC
TAATGGAACCTATCGTACTCGGTACCTGGCATCTCTCTTGGTGTGTTTTC
TTTCGTGGGAAATTGTTTTGGGACATTTGTCGCCGGCAAGGTATACCGCG
CGACGCCCCCAGCATTTGTTCGCGCTATACCTATCAATAGCAACGAGAAA
GGCATTCCGTGTCCGCAGTTTTCTGAAAGCGCAAATATGTATTCATGCGA
TAGCATTTACCAGTTTATTATTCCAGCCCTGCTCCTTCGGCCTGCCCTCC
GATATCGCTCCCCTGATGCCCGGCGCAGGACTATACGGAGTATTACTGTG
GCCTCACCAATGATCCGCGCGTTCCTGGGCTGGCCCTGGTGAAGGGGGGT
ACGCCGCATTACGATGTTCTTGCGGCGGGCGGAACCCGCCTTGCGAAAGT
GCTGGCGAGC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1010:169743..170452-

>mRNA_S-latissima_F_contig1010.131.1 ID=mRNA_S-latissima_F_contig1010.131.1|Name=mRNA_S-latissima_F_contig1010.131.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=696bp|location=Sequence derived from alignment at S-latissima_F_contig1010:169743..170452- (Saccharina latissima SLPER63f female)
ATGGCGCAAGCTCTCTCCGCTAGCTTGCCGAAGGCTGGGGAAGCGGCTGG
CATGCCAGCGGATGACGCCGTGCGGCCGGGGCGGGGGCTGGGCCTTGTCG
TCGGTGTGGTGGTGGCGGCTTTAACACCCGACAGCGTTCGCCCCACTGAG
GGGACGATTGGACACGCCACACACGACGAATTGCGCCAGGAGATCGACCG
CCGTCTGAAGTTGGAGATGGCGCAAGCTCTCTCCGCTAGCTTGCCGAAGG
CTGGGGAAGCGGCTGGCATGCCAGCGGATGACGCCGTGCGGCCGGGGCGG
GGGCTGGGCCTTGTCGTCGGTGTGGTGGTGGCGGCTTTAACACCCGACAG
CGTTCGCCCCACTGAGGGGACGATTGGACACGCCACACACGACGAATTGC
GCCAGGAGATCGACCGCCGTCTGAAGTTGGAGGACTATACGGAGTATTAC
TGTGGCCTCACCAATGATCCGCGCGTTCCTGGGCTGGCCCTGGTGAAGGG
GGGTACGCCGCATTACGATGTTCTTGCGGCGGGCGGAACCCGCCTTGCGA
AAGTGCTGGCGAGCGACTATACGGAGTATTACTGTGGCCTCACCAATGAT
CCGCGCGTTCCTGGGCTGGCCCTGGTGAAGGGGGGTACGCCGCATTACGA
TGTTCTTGCGGCGGGCGGAACCCGCCTTGCGAAAGTGCTGGCGAGC
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