mRNA_S-latissima_F_contig101.93.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig101.93.1 vs. uniprot
Match: A0A6H5KB32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB32_9PHAE) HSP 1 Score: 533 bits (1374), Expect = 6.370e-168 Identity = 350/733 (47.75%), Postives = 411/733 (56.07%), Query Frame = 2
Query: 635 EGARLHAYQLISSEPRLLLLQAEPTLAGRLRYLLDSFPALRGYWNARLRKAACLLAIPKETLEARQNGLKELFPQDVDVQ---------AIVSQAPLLLRHSTENVAESLAVMEKLVPGIRIDRVLRSAPQLLVQQKGVASRRLAHLRQVLGLNASPEAELGAALLLRIVARSFDLCGFSCRLCTVAGNMLLLYLERSGVN----VGVAHGVCRDPGAEGRGTETRTLARFANVFPQVLVMDPTAVRAKIEGIERLLPGIDSLAVVSTRPHLLGFDIRRNVSLKVSRLRVLFGPQT-------------------------------------DLAVAVTRCPSLLTMSSHTAAGKLEKLQEALPSGLDARSIVAKEPRVMSLDMGSTVPRKIGDLARAFAVHADADAEETAA-----------------MMAQVLRCNPNALRFDTTTLASKLVALRKADLPPSIVRSIVRDAPRCLSAGAKSLGDRVSTLKKAFPTIPLERLLGEAPCLLQKQIVPGDQVALLQELFPSSDPIHLVEGAPMLLALSDNTLRVKSEAWRHILESSVDVPWEQAVADFPQLLCQGMGRAARIAFLLRE---------------------------------------------------SSSPACVGDDSGESSAA--NGDXXXXXXXXXXXXXXXXXGGAVGAGTKLMSAADAYSEVCRRVADFASDNPAYPAFVDLLLSEA 2473
EGARLHAYQL+SSEPRLLLL+AEP L+GRLR+LL+ P+LRG W+ARLR+AA LLAI L++R GL +LFP D D+Q AIV+Q PLLLRH TE V+E+LA +E+LVPG+R+DRVLRSAPQLLVQ V +RLA LR VL L SPE E +RI + S + +G R G + +G G G GR R LARFAN FPQ+L M+P VRAKIEG+E LLPG+D LA+V +RPHLLGFD+RRNVSLKVSRLR L Q+ DL AV RCPSLLT+SS+T+ K+EKLQEALPSGL AR+IVAKEPRVMSLDM STVPRK+ DL+ AFA A MMAQ LR NPNALRFD TLA KL LR A L V +V APRCLSA A +L RVS L++AFP++PL RLLGEAPCLLQK I P + MLLALS+ TLRVK +AWR I+E VDVPWEQ VADFPQLLCQG GRAAR+ FLL + +S GD G ++AA GD GG+ G + MSAA A EVCRRV+DF SD+P YP F+D LL A
Sbjct: 67 EGARLHAYQLVSSEPRLLLLRAEPELSGRLRFLLEMLPSLRGSWSARLRRAAPLLAIESSALQSRLEGLADLFPPDADLQVGAGLFIGGAIVNQTPLLLRHRTEKVSEALANIERLVPGLRMDRVLRSAPQLLVQPLDVVEKRLAQLRAVLCLTPSPEVER-----MRITLEPNNSSDVSIESDSGSG-------RRGGGDRDDDIGSRGG--GRVGGGGRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLAPQQRRGQQETSTMVGGALRLRTFFLLRAKGTDASDDLVAAVARCPSLLTLSSNTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSHAFAELAGGXXXXXXXXXXXXXXXXXXXXXXXXMMAQTLRYNPNALRFDPATLARKLEVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKXXXXXXXXXXXXXXXXXXXXXMLLALSEKTLRVKRDAWRSIVEDRVDVPWEQVVADFPQLLCQGFGRAARVPFLLLDXXXXXXXXXXXXXXXXXXXXXGERVVTTAVAMVAAGGLGDEVLRATHAPGVASDGVAAGDGVGAAAAAAAGGDSWRSGVGKERSAGGGVDGGS-GVAPRTMSAAAACREVCRRVSDFESDHPGYPCFLDSLLVAA 784
BLAST of mRNA_S-latissima_F_contig101.93.1 vs. uniprot
Match: D7G2Q0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q0_ECTSI) HSP 1 Score: 336 bits (861), Expect = 3.400e-99 Identity = 196/347 (56.48%), Postives = 221/347 (63.69%), Query Frame = 2
Query: 1316 MDPTAVRAKIEGIERLLPGIDSLAVVSTRPHLLGFDIRRNVSLKVSRLRVLFGPQT-----------------------------DLAVAVTRCPSLLTMSSHTAAGKLEKLQEALPSGLDARSIVAKEPRVMSLDMGSTVPRKIGDLARAFAVHADADAEETA----------------AMMAQVLRCNPNALRFDTTTLASKLVALRKADLPPSIVRSIVRDAPRCLSAGAKSLGDRVSTLKKAFPTIPLERLLGEAPCLLQKQIVPGDQVALLQELFPSSDPIHLVEGAPMLLALSDNTLRVKSEAWRHILESSVDVPWEQAVADFPQLLCQGMGRAARIAFLL 2221
M+P VRAKIEG+E LLPG+D LA+V +RPHLLGFD+RRNVSLKVSRLR L Q+ DL AV RCPSLLT+SS T+ K+EKLQEALPSGL AR+IVAKEPRVMSLDM STVPRK+ DLARAF HA MMAQ LR NPNALRFD TLA KL LR A L V +V APRCLSA A +L RVS L++AFP++PL RLLGEAPCLLQK I P ++ MLLALS+NTLRVK +AWR ILE+ VDVPWEQ VADFPQLLCQG+GRAAR+ FLL
Sbjct: 1 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLPPQQRRGQQPGRGQQETSNMANGTDASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMTSTVPRKLADLARAFTEHAGGXXXXXXXXXXXXXXXXXXXXXXVMMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXXXXMLLALSENTLRVKRDAWRSILENRVDVPWEQVVADFPQLLCQGLGRAARVPFLL 347 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig101.93.1 >prot_S-latissima_F_contig101.93.1 ID=prot_S-latissima_F_contig101.93.1|Name=mRNA_S-latissima_F_contig101.93.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=946bp MFLLERGLSQWEVRKVLPVIRRDPKLMTDIGVLAAKMQAIADLLESAASWback to top mRNA from alignment at S-latissima_F_contig101:60088..72086- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig101.93.1 ID=mRNA_S-latissima_F_contig101.93.1|Name=mRNA_S-latissima_F_contig101.93.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=11999bp|location=Sequence derived from alignment at S-latissima_F_contig101:60088..72086- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig101:60088..72086- >mRNA_S-latissima_F_contig101.93.1 ID=mRNA_S-latissima_F_contig101.93.1|Name=mRNA_S-latissima_F_contig101.93.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=5676bp|location=Sequence derived from alignment at S-latissima_F_contig101:60088..72086- (Saccharina latissima SLPER63f female)back to top |