mRNA_S-latissima_F_contig101.89.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.89.1
Unique NamemRNA_S-latissima_F_contig101.89.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:141..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size209
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.89.1prot_S-latissima_F_contig101.89.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 184..995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.896265-UTR-S-latissima_F_contig101:140..1831622815367.896265-UTR-S-latissima_F_contig101:140..183Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 141..183 -
1693924837.8630989-UTR-S-latissima_F_contig101:140..1831693924837.8630989-UTR-S-latissima_F_contig101:140..183Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 141..183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.9057078-CDS-S-latissima_F_contig101:183..1901622815367.9057078-CDS-S-latissima_F_contig101:183..190Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 184..190 -
1693924837.8729086-CDS-S-latissima_F_contig101:183..1901693924837.8729086-CDS-S-latissima_F_contig101:183..190Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 184..190 -
1622815367.916404-CDS-S-latissima_F_contig101:837..9951622815367.916404-CDS-S-latissima_F_contig101:837..995Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 838..995 -
1693924837.9163275-CDS-S-latissima_F_contig101:837..9951693924837.9163275-CDS-S-latissima_F_contig101:837..995Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 838..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.89.1

>prot_S-latissima_F_contig101.89.1 ID=prot_S-latissima_F_contig101.89.1|Name=mRNA_S-latissima_F_contig101.89.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=55bp
STTATAVNSQTALPGICKGCFTGREPREPLTLVCTASADPSADDELHHAD
ADDP*
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mRNA from alignment at S-latissima_F_contig101:141..995-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.89.1 ID=mRNA_S-latissima_F_contig101.89.1|Name=mRNA_S-latissima_F_contig101.89.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=855bp|location=Sequence derived from alignment at S-latissima_F_contig101:141..995- (Saccharina latissima SLPER63f female)
AGCACGACTGCAACAGCAGTAAACAGTCAGACAGCCCTGCCGGGTATATG
CAAGGGGTGTTTTACAGGACGAGAGCCGAGGGAGCCGCTCACTTTGGTCT
GCACAGCTAGCGCTGACCCTTCGGCAGATGATGAACTTCACCACGCTGAT
GCGGATGAGTGAGTGCATTGCTCCACGTAGGGAGAGAGAGGTAGATGCAG
GTCGTGTGTGGTAGTGCTGCTGCTGCTTGCTGTGTTCCGACGTCTTTTTT
TTGCGGGAAAATGATCTCGTACATCAACCGGTCACTCGAAGTCAAAGTGG
CGAAAAAAAGTTTTTCTTATTTTTTTATTTTTACGAAGTCGTTCGTTTTG
TCCTGTGAAATGTGGATGCTGGTCGAGTGCTTCTTTTGTGCTGCTGTACC
GTGGAGTACTATGTTAGTGCCGACGCTGGCTGGTGCCGTGGCCGCATGCA
AGTGCTTGGCCACCCTTTTCTGCTCGTGCCTCGTCCCTGGTGTCCTTCGG
GGCTTGCTTTCCTCGATCAATACGTACTCACTGCCGCTCCTATCATACGT
GTCTAATATTTTCGGCTGTCTTGTATTACTGACTGAGTTCAACTCGTACT
ATCGATCAAGCAGCAATGATATCAGCAGCAGCGAAAAGCAAGAGCAGCAG
CAGCAAAAGCACCAGCACCAGCACCAGCAGATCAGCTCAGCCAGTGCCAC
TTTACCAACAACCCTCCCTGCCATCTCCCTCCCCTTCCTTTCCCTTCCGC
TCTGCTGCTGGCCCCAACAACAACTACTATCATCATCATTAAAAAAAAAA
AACAGTCCATGAACACAATCACTCCAACCGCGCTCAGTACACCAGTAGCG
ACGAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig101:141..995-

>mRNA_S-latissima_F_contig101.89.1 ID=mRNA_S-latissima_F_contig101.89.1|Name=mRNA_S-latissima_F_contig101.89.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=330bp|location=Sequence derived from alignment at S-latissima_F_contig101:141..995- (Saccharina latissima SLPER63f female)
AGCACGACTGCAACAGCAGTAAACAGTCAGACAGCCCTGCCGGGTATATG
CAAGGGGTGTTTTACAGGACGAGAGCCGAGGGAGCCGCTCACTTTGGTCT
GCACAGCTAGCGCTGACCCTTCGGCAGATGATGAACTTCACCACGCTGAT
GCGGATGAAGCACGACTGCAACAGCAGTAAACAGTCAGACAGCCCTGCCG
GGTATATGCAAGGGGTGTTTTACAGGACGAGAGCCGAGGGAGCCGCTCAC
TTTGGTCTGCACAGCTAGCGCTGACCCTTCGGCAGATGATGAACTTCACC
ACGCTGATGCGGATGATCCATGATCCATGA
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