mRNA_S-latissima_F_contig101.122.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.122.1
Unique NamemRNA_S-latissima_F_contig101.122.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig101.122.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 2 
Query:   44 RSTRDADQQLALGEECLLLLILLATEMPVIPDPLPRNANAPGNSVDFGGGVG 199
            RST D DQQLALGEECL+LLILL TEMP++PDPL      PG     GGG G
Sbjct: 1087 RSTLDPDQQLALGEECLMLLILLVTEMPMVPDPLTPE---PGVDSGDGGGTG 1135
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BLAST of mRNA_S-latissima_F_contig101.122.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.500e-9
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:   44 RSTRDADQQLALGEECLLLLILLATEMPVIPDPLPRNANAPGNSVDFGGG 193
            RST D DQQLALGEECL+LLILL TEMP++PDPL      P   VD G G
Sbjct: 1242 RSTLDPDQQLALGEECLMLLILLVTEMPMVPDPL-----TPEPGVDSGDG 1286
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2M8_ECTSI1.160e-965.38E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JTE4_9PHAE5.500e-966.00E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:553453..555128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.1963062-CDS-S-latissima_F_contig101:553452..5535191622815368.1963062-CDS-S-latissima_F_contig101:553452..553519Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 553453..553519 +
1693924838.2962635-CDS-S-latissima_F_contig101:553452..5535191693924838.2962635-CDS-S-latissima_F_contig101:553452..553519Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 553453..553519 +
1622815368.208557-CDS-S-latissima_F_contig101:554955..5551281622815368.208557-CDS-S-latissima_F_contig101:554955..555128Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 554956..555128 +
1693924838.3112288-CDS-S-latissima_F_contig101:554955..5551281693924838.3112288-CDS-S-latissima_F_contig101:554955..555128Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 554956..555128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.122.1prot_S-latissima_F_contig101.122.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 553453..555128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.122.1

>prot_S-latissima_F_contig101.122.1 ID=prot_S-latissima_F_contig101.122.1|Name=mRNA_S-latissima_F_contig101.122.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=80bp
RRRCGRNVVEAPAEKVDTRRGSATGPRGGVPTAADPARHGDAGHPRSPPP
KRKRPWELRGFRRRSRRDGSGGGCWTGRP*
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mRNA from alignment at S-latissima_F_contig101:553453..555128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.122.1 ID=mRNA_S-latissima_F_contig101.122.1|Name=mRNA_S-latissima_F_contig101.122.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1676bp|location=Sequence derived from alignment at S-latissima_F_contig101:553453..555128+ (Saccharina latissima SLPER63f female)
AGGAGGCGGTGCGGAAGAAATGTGGTGGAGGCGCCTGCGGAGAAGGTCGA
CACGAGACGCGGATCAGGTACAGTACTGCCCTTGGGTTTATGGTATGGTT
GTGTTTAGGGTGGGATGGTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTG
CTGCTGCTGCGGTTGCTGCTACTGCTACTACTGGTGGGAGTGTGACCGGC
CCCGTTTGCTGTCGTTGTTGTTGGTGATGGTGGTGGCGTTGTTGTTGTTT
CATGGGTTGTTTTTGGTGGATAGTTTTGGCTTTGGTAGGTGGTACGTCGT
GGATTGTTTTGGCGGATGACTTTGATTTGGTGGGTAGGTAGATAAAAGGT
GCCATGGATGGTTCCATGGATCATTCGATGGGTTGCTCGGTTAATGATTT
GATGGATGCTTCGATGGGTAACAAGCCCACAGCGGTTTCGATGGATTAGT
TTATGGTTGTTTCCGTGGATGATTCCAGGTACTTGCATGGATGACGCCAC
GGTTGGTATGGTACGTTCGACGACTCGGTGGGTAATTCGATGAGCAATCC
CATGTCTCATTCGATGGATTATTCGATGGACGATTCCGCGTGCACGCCCA
CATATATATAGTGCCATGGATAATATTCCGCGGATGGTTACGTGAACGGT
TGGATAGATGGTTCCGTGGGCGATTCCACGAAACGTGCCGTGGACGGTCT
CATATATGTTTCCGCGGGTTGTACTATAGAGAGAGGAAAACGTGACAGGA
GACGGAGGGCTAGAGTTTCAGCGCGCTAACCGACACAAATAGTTTATCGG
CCGCTCTCTCCCTATCCCTGCCACCCCCCCCCCCCCCCACTTCCTCCCGC
CCTAGGGTGGCATATGCGAGACGAACACTGCATTTCCGGCTATTTAACCC
TTTTAGGACGGCAGACCCGTTTTGGGGACAAGCCACTCTAACTCTAAGTA
ATTTGTCCCCAAAGCGGGACTCCAGTCCTATAAGGGTTAAGACACCTCCG
TCGCATCTCCGCCCTCCCTTTCGCCTCCTCCGCTCTCCCGACCCCTCCAT
CCCGCCCTACGTTTTCCCTCCCTTCGACCCCCTCCACGCGCCCGCTCCGC
CCCTCCCCCCTCCCCTCCTCCTCCTCGACCGCCCCTTTTTGCCTTATGCC
TCCGCCTCCCCATTGCGTTCCCCGCCCCTACCCCCCCCCCCCCCCCCCCC
GGTCCTCGCACATTGTCTTTTTGTGGAAACCTCATGATGGGAACGAACAC
GCAACGGCGACGATTATGACAACGCCGCCTACGACGAAAACGTCAACAAC
AACAACAACAACAACAAAAATCAACGACGGCGACATAACCAACGATAACG
TCGACAATAACATCAACGAACAACAATGGCAACAACAACAACAACAACAA
CACTGGGAACAACGACAACGACAACAACATCGGCCAACAACAACAACACC
ATTGTCGTCCAATAACAACATTGGCCCACAACAACATTGTCCCACGACAA
CAGCAACTGGCCCTCGGGGAGGAGTGCCTACTGCTGCTGATCCTGCTCGC
CACGGAGATGCCGGTCATCCCCGATCCCCTCCCCCGAAACGCAAACGCCC
CTGGGAACTCCGTGGATTTCGGAGGAGGAGTAGGAGGGATGGGAGTGGGG
GTGGGTGTTGGACTGGGAGGCCCTAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig101:553453..555128+

>mRNA_S-latissima_F_contig101.122.1 ID=mRNA_S-latissima_F_contig101.122.1|Name=mRNA_S-latissima_F_contig101.122.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=480bp|location=Sequence derived from alignment at S-latissima_F_contig101:553453..555128+ (Saccharina latissima SLPER63f female)
AGGAGGCGGTGCGGAAGAAATGTGGTGGAGGCGCCTGCGGAGAAGGTCGA
CACGAGACGCGGATCAGAGGAGGCGGTGCGGAAGAAATGTGGTGGAGGCG
CCTGCGGAGAAGGTCGACACGAGACGCGGATCAGCAACTGGCCCTCGGGG
AGGAGTGCCTACTGCTGCTGATCCTGCTCGCCACGGAGATGCCGGTCATC
CCCGATCCCCTCCCCCGAAACGCAAACGCCCCTGGGAACTCCGTGGATTT
CGGAGGAGGAGTAGGAGGGATGGGAGTGGGGGTGGGTGTTGGACTGGGAG
GCCCTAACAACTGGCCCTCGGGGAGGAGTGCCTACTGCTGCTGATCCTGC
TCGCCACGGAGATGCCGGTCATCCCCGATCCCCTCCCCCGAAACGCAAAC
GCCCCTGGGAACTCCGTGGATTTCGGAGGAGGAGTAGGAGGGATGGGAGT
GGGGGTGGGTGTTGGACTGGGAGGCCCTAA
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