mRNA_S-latissima_F_contig101.115.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.115.1
Unique NamemRNA_S-latissima_F_contig101.115.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:501594..502922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.115.1prot_S-latissima_F_contig101.115.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 501628..502922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.1427436-UTR-S-latissima_F_contig101:501593..5016271622815368.1427436-UTR-S-latissima_F_contig101:501593..501627Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 501594..501627 -
1693924838.2689612-UTR-S-latissima_F_contig101:501593..5016271693924838.2689612-UTR-S-latissima_F_contig101:501593..501627Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 501594..501627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.1523197-CDS-S-latissima_F_contig101:501627..5018021622815368.1523197-CDS-S-latissima_F_contig101:501627..501802Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 501628..501802 -
1693924838.2785134-CDS-S-latissima_F_contig101:501627..5018021693924838.2785134-CDS-S-latissima_F_contig101:501627..501802Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 501628..501802 -
1622815368.1612093-CDS-S-latissima_F_contig101:502821..5029221622815368.1612093-CDS-S-latissima_F_contig101:502821..502922Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 502822..502922 -
1693924838.2864244-CDS-S-latissima_F_contig101:502821..5029221693924838.2864244-CDS-S-latissima_F_contig101:502821..502922Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 502822..502922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.115.1

>prot_S-latissima_F_contig101.115.1 ID=prot_S-latissima_F_contig101.115.1|Name=mRNA_S-latissima_F_contig101.115.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=92bp
RLLFVSATAVDARKEPVPTRTPTTPSSVWCVIDSSLRLLSAPWWSSVDQL
GKLTTLSRWTAAAIFWSPPRDAGRGKGQTGQTSAQGCWEQP*
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mRNA from alignment at S-latissima_F_contig101:501594..502922-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.115.1 ID=mRNA_S-latissima_F_contig101.115.1|Name=mRNA_S-latissima_F_contig101.115.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-latissima_F_contig101:501594..502922- (Saccharina latissima SLPER63f female)
CGCTTGCTCTTCGTCTCGGCGACTGCTGTTGACGCGAGGAAGGAGCCGGT
GCCGACGCGGACCCCGACGACACCCTCTTCTGTGTGGTGTGTGATCGACA
GGTGTGTACTCGGGAATGGCGAAAAAATTACCTTTCGGGCCGTGGGTTGG
CTGCAGGTCAGGCCATGTATCCCACCGAACCACGCGTGTGCCGTATATTG
ACGGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAACAGCAGCAGCAGT
ACACAGCAGTAACCGCAGTACCATACCTGACACGGCCGAGTATTTTACAC
GCCTGGACTGCTGCTGCGACGCGTTCATCAGCCGGTTAACGTGACACTCC
ACCTTTTTCAATCTAGATGGGCTGCGGGCTGGGACCGTAGCCGGGCCTGG
CTCCCTCCGAAATCACCGTGCGTACGGTCGACAGTCGACAAGCGTCACGT
GCCATCGTCTGTCGTGCATCGTGCAACTCCGCTCGAAAGAGCAAGCCGGG
ACCGTACTCCTTGAGGGGGGAGGGAGTCTTGAGGGGGGAAGGGATCTTGC
ATGGCTGGTCTTGATTGAATCACTGAAGCGTGGGTAGGCTCAAAAACGCT
TTGGGGGCACTGGGGAAGCGCCGCCGTGCCTCTGCGTTGCTTCCCCTCGA
GCAGAGACGAGAGCGGGCTCGGTAAGAGCAACCAAGCCAAGCTGTAAAAT
AAATCACAAAAAAAGAGGAACAAGAGAGTTTGAAGTTTGAAGTTGAAAAA
TATACATCGACTTGGCCGGGAATGTAATACACATTTGATCTTCACATCAT
TGTCGAAACGCGGCTTATATTTCCGGGCATAGCGGTGTAAAAAGGCATAC
CAGGTACCTGGTTATACATGATGCATAGCGTAGCGGGGGCGATGGCGGCC
TTTCTCCCGCTCCTCCCGCATCACCACAACGCACGACACACCACCGGAGA
GCACTCGCACGGGAAACGACCAACTACACACAAGACCAACGACCTCGAGC
CAACCATCACCCCCCCTGCCCCCCCCCCCCGCCGTCCCCTCTCCTCTTCC
CCTACCCCCCTCCCCCTCTTCCCCCCTTCCCGAATCCCAATCTCCCAAAA
TCCCCGCCCCCCCCCCCCAGCTCCCTCAGGCTGCTCTCTGCCCCGTGGTG
GAGCTCTGTGGATCAACTGGGGAAGCTAACTACACTCTCCAGGTGGACCG
CTGCTGCTATTTTTTGGTCTCCTCCCCGAGACGCAGGCAGAGGGAAAGGA
CAAACAGGACAGACGTCAGCACAGGGGTGTTGGGAGCAGCCTTAACAAGC
AGCAAGTTTTATTGGTGCTGTCTCCGGGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig101:501594..502922-

>mRNA_S-latissima_F_contig101.115.1 ID=mRNA_S-latissima_F_contig101.115.1|Name=mRNA_S-latissima_F_contig101.115.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=552bp|location=Sequence derived from alignment at S-latissima_F_contig101:501594..502922- (Saccharina latissima SLPER63f female)
CGCTTGCTCTTCGTCTCGGCGACTGCTGTTGACGCGAGGAAGGAGCCGGT
GCCGACGCGGACCCCGACGACACCCTCTTCTGTGTGGTGTGTGATCGACA
GCGCTTGCTCTTCGTCTCGGCGACTGCTGTTGACGCGAGGAAGGAGCCGG
TGCCGACGCGGACCCCGACGACACCCTCTTCTGTGTGGTGTGTGATCGAC
AGCTCCCTCAGGCTGCTCTCTGCCCCGTGGTGGAGCTCTGTGGATCAACT
GGGGAAGCTAACTACACTCTCCAGGTGGACCGCTGCTGCTATTTTTTGGT
CTCCTCCCCGAGACGCAGGCAGAGGGAAAGGACAAACAGGACAGACGTCA
GCACAGGGGTGTTGGGAGCAGCCTTAACTCCCTCAGGCTGCTCTCTGCCC
CGTGGTGGAGCTCTGTGGATCAACTGGGGAAGCTAACTACACTCTCCAGG
TGGACCGCTGCTGCTATTTTTTGGTCTCCTCCCCGAGACGCAGGCAGAGG
GAAAGGACAAACAGGACAGACGTCAGCACAGGGGTGTTGGGAGCAGCCTT
AA
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