mRNA_S-latissima_F_contig101.108.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig101.108.1
Unique NamemRNA_S-latissima_F_contig101.108.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig101.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig101contigS-latissima_F_contig101:422250..422679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig101.108.1prot_S-latissima_F_contig101.108.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig101 422274..422573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.5067537-UTR-S-latissima_F_contig101:422249..4222731622815368.5067537-UTR-S-latissima_F_contig101:422249..422273Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 422250..422273 +
1693924838.4345767-UTR-S-latissima_F_contig101:422249..4222731693924838.4345767-UTR-S-latissima_F_contig101:422249..422273Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 422250..422273 +
1622815368.5332193-UTR-S-latissima_F_contig101:422573..4226791622815368.5332193-UTR-S-latissima_F_contig101:422573..422679Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 422574..422679 +
1693924838.5198057-UTR-S-latissima_F_contig101:422573..4226791693924838.5198057-UTR-S-latissima_F_contig101:422573..422679Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig101 422574..422679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.5203874-CDS-S-latissima_F_contig101:422273..4225731622815368.5203874-CDS-S-latissima_F_contig101:422273..422573Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 422274..422573 +
1693924838.4751306-CDS-S-latissima_F_contig101:422273..4225731693924838.4751306-CDS-S-latissima_F_contig101:422273..422573Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig101 422274..422573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig101.108.1

>prot_S-latissima_F_contig101.108.1 ID=prot_S-latissima_F_contig101.108.1|Name=mRNA_S-latissima_F_contig101.108.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=100bp
MEVQARGKNKNERIGTRFGIRFGIRFGIRFGIRFRTRFPIWNQIWNLIWN
RMWNRIWNQIWNPFHPILVGRSTAPRTDIHMILCHHTDGGTRAFSIKIG*
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mRNA from alignment at S-latissima_F_contig101:422250..422679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig101.108.1 ID=mRNA_S-latissima_F_contig101.108.1|Name=mRNA_S-latissima_F_contig101.108.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=430bp|location=Sequence derived from alignment at S-latissima_F_contig101:422250..422679+ (Saccharina latissima SLPER63f female)
CCCCCATCTCTGAAACGCAAAATAATGGAAGTGCAAGCAAGAGGGAAAAA
CAAAAACGAACGCATTGGGACCCGATTCGGAATCCGATTTGGAATCCGAT
TTGGAATCCGATTTGGAATCCGATTTAGGACCCGGTTTCCGATTTGGAAC
CAGATTTGGAATCTGATTTGGAATCGGATGTGGAATCGGATTTGGAATCA
GATTTGGAATCCATTCCATCCCATCCTGGTGGGTAGATCGACCGCCCCAC
GCACAGACATACATATGATACTCTGCCATCATACCGACGGCGGTACAAGG
GCATTTTCCATCAAGATTGGTTGAAACCCAAAAATACCAACGCCACGCCT
CCGGTGGCAGTAGGTCATGCGTGGCCGTTTGCTCATTCGGACCTCAAACG
AACAAAATCACCCCCCCCCCCTGGTCATAC
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Coding sequence (CDS) from alignment at S-latissima_F_contig101:422250..422679+

>mRNA_S-latissima_F_contig101.108.1 ID=mRNA_S-latissima_F_contig101.108.1|Name=mRNA_S-latissima_F_contig101.108.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=600bp|location=Sequence derived from alignment at S-latissima_F_contig101:422250..422679+ (Saccharina latissima SLPER63f female)
ATGGAAGTGCAAGCAAGAGGGAAAAACAAAAACGAACGCATTGGGACCCG
ATTCGGAATCCGATTTGGAATCCGATTTGGAATCCGATTTGGAATCCGAT
TTAGGACCCGGTTTCCGATTTGGAACCAGATTTGGAATCTGATTTGGAAT
CGGATGTGGAATCGGATTTGGAATCAGATTTGGAATCCATTCCATCCCAT
CCTGGTGGGTAGATCGACCGCCCCACGCACAGACATACATATGATACTCT
GCCATCATACCGACGGCGGTACAAGGGCATTTTCCATCAAGATTGGTTGA
ATGGAAGTGCAAGCAAGAGGGAAAAACAAAAACGAACGCATTGGGACCCG
ATTCGGAATCCGATTTGGAATCCGATTTGGAATCCGATTTGGAATCCGAT
TTAGGACCCGGTTTCCGATTTGGAACCAGATTTGGAATCTGATTTGGAAT
CGGATGTGGAATCGGATTTGGAATCAGATTTGGAATCCATTCCATCCCAT
CCTGGTGGGTAGATCGACCGCCCCACGCACAGACATACATATGATACTCT
GCCATCATACCGACGGCGGTACAAGGGCATTTTCCATCAAGATTGGTTGA
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