mRNA_S-latissima_F_contig1009.88.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: A0A6H5JY02_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY02_9PHAE) HSP 1 Score: 509 bits (1312), Expect = 1.080e-173 Identity = 268/487 (55.03%), Postives = 326/487 (66.94%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPK-VSVRGAERTPVRRSSFFRDTYR--TRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFC-SCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGASA---SPSASILNFVTARAMLPGLSIMLASLGSMKV 1443
+QWYPVLSLKDTDP RAH V+LLGK+LVVW+N EG+W+ FDDRCPHRAAPLTEGR+E DGSLLCAYH WRFD+DGKCL+IPQS+RGGKDEAQ AC KV AQ ++WVWGENGPDAGLESA+TPA LIP+LDD EG+ES RV + Q DL Y W+ FMENVVDP+HV VSHHG R T P + ++ + R PV F +R + + F C V + + G + L+LY +PTRPGW R++ +Y+ ++ + R S + KLP W+QHV G LF+HQD+VFLH Q ILASAGYD SNY Q VFVPAAAD VL L++WI GSGGPAW K CD LPPRER R+ LF+VYE HTKSCTSC GALKN+ + L K +A S WAVLRGARAVG +A SPSA ++N VTARAMLP +++ AS+G++K+
Sbjct: 98 KQWYPVLSLKDTDPGRAHPVQLLGKELVVWRNKEGRWSCFDDRCPHRAAPLTEGRIEDDGSLLCAYHAWRFDADGKCLSIPQSDRGGKDEAQPKACAKV-----AQGMVWVWGENGPDAGLESALTPAQLIPDLDDKEGIESGRVMLARVGQNDLAYGWDTFMENVVDPSHVTVSHHGVAG----DRYTGPSPIDLKPSARWPVPTKDGFEFEFRDDSVSSDSTVTFQPPCLVINEAKDSAGKLL-LILYGIPTRPGWVRLLGRS----AYVHTFAPNSKKAKEQAKEDKRNGVKKSRLQATANVVTKLPSWLQHVTGSLFLHQDLVFLHHQEK-------ILASAGYDSSNYGQAVFVPAAADRAVLALRQWITKHGSGGPAWDKNCDRTLPPRERNREDLFNVYENHTKSCTSCQGALKNVKKMLTTAKTAAVISFTWAVLRGARAVGTAAAAGSPSARVINTVTARAMLPAVALTFASVGAIKI 563
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: A0A6H5KG92_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG92_9PHAE) HSP 1 Score: 484 bits (1247), Expect = 4.170e-164 Identity = 247/493 (50.10%), Postives = 323/493 (65.52%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDT----YRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRR-------RRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGAS--ASPSASILNFVTARAMLPGLSIMLASLGSMKV 1443
+QWYPVLS KD+DP +AHAV+LLGKDLVVW+NTEG+W+ FDDRCPHRAAPL+EGRVEKDGSLLCAYH WRFD+DGKCL+IPQS+RGGKDE AC K+YPTQVAQD++WVWG+NGPDA L+S +T AL+ L+D +G++S RV G + QRDL YSWE F ENV+DPAHVVVSHHG R+ + + + + + F D + + GV F V V I ++G LV Y +PTRPGW RM + Q+ + +G + +R S L + R S L +AP++ W+QH+F H+F+HQDM L+ Q I+AS+G+ + ++ G++ P +D G+ TL++WIK GSGGP W KG D +LP R D ++D+YEQHTK CT+CLGALK + +C+ A K S ASL WAVLR A A+ S ASP NFV A+AMLPG+ +MLASL + K+
Sbjct: 73 KQWYPVLSEKDSDPGKAHAVQLLGKDLVVWRNTEGRWSAFDDRCPHRAAPLSEGRVEKDGSLLCAYHAWRFDTDGKCLSIPQSDRGGKDETNPRACAKLYPTQVAQDMVWVWGKNGPDAVLDSVLTKPALVSALEDKKGIKSGRVVPGVVTQRDLAYSWETFWENVMDPAHVVVSHHGLMGK----RSMAKPLDLEATPQPAMTKEGFVVDNNSPQFGAKQGVATF--VPPALVEIATELEDGKTISLVQYNIPTRPGWSRMFNRQLTITPEV--VGENKGDDNKDKKRAPSLLQLVARISPVK----LKLAPNEQRAWIQHIFSHMFVHQDMPLLYHQEK-------IMASSGHTGAKWSDGIYTPTTSDKGIHTLRKWIKKFGSGGPPWPKGYDTSLPSRHDNPDVMWDIYEQHTKHCTACLGALKRVEQCITAAKVSTVASLTWAVLRAASAISTSILASPGTPPSNFVAAKAMLPGVLLMLASLKTTKM 546
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: A0A6H5KEF5_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEF5_9PHAE) HSP 1 Score: 474 bits (1221), Expect = 3.430e-160 Identity = 251/496 (50.60%), Postives = 313/496 (63.10%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLF--FFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSY---------IWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYD---ISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGASA---SPSASILNFVTARAMLPGLSIMLASLGSMK 1440
+QWYP+L+ DP RAH V+LLGK+LVVW+N EG+W+ FDDRCPHRAAPLTEGR+E DGSLLCAYH WRFD+DGKCL+IPQS+RGGKDEA AC KVYPTQVAQ IIWVW ENGPDAGLESA+TP LIPELDD EG+ S RV + DL Y W+ +EN VDPAHV +HHG Y+ RP + + E PV +S FR + FV C V ++ + +G++ KL+LY +PT+PGW R+V Q Y + +R + S LL R + K P W+ H LF++QDMVFLH Q LAS GYD S+Y + V+ PA AD V+ +++WI GSGGPAW K CDP LP RE+ R+ LFD YE HTK+C++CL ALKN+NR L A K + W +LRGARAV A S SA ++N VTARAMLP +++MLASLG++K
Sbjct: 72 KQWYPLLAADHVDPGRAHPVQLLGKNLVVWRNKEGRWSCFDDRCPHRAAPLTEGRIEDDGSLLCAYHAWRFDADGKCLSIPQSDRGGKDEANPKACAKVYPTQVAQGIIWVWAENGPDAGLESALTPPHLIPELDDEEGLASGRVVPQGVQHTDLAYGWDTMIENFVDPAHVPSAHHGVA--GDRYKDVRP-IDLEPDEEWPVTATSGFRFKFDDEVAGTHNKITFVPPCLVLVENADNSGTL-KLMLYGIPTKPGWSRLVGRQAYVHKYAPKSKEAKALHKKNKRLGKKTSGLLVAARIT------------SKFPQWLIHATSGLFLYQDMVFLHHQEKT-------LASVGYDGTRSSSYGRAVYTPAPADRAVMAVRKWIATHGSGGPAWDKDCDPTLPEREQNREVLFDYYEGHTKTCSTCLRALKNVNRLLAASKTATVVFFTWGLLRGARAVSTPAAVGSRSAGVINAVTARAMLPAVALMLASLGAVK 544
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: D8LGA1_ECTSI (Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA1_ECTSI) HSP 1 Score: 469 bits (1206), Expect = 3.410e-159 Identity = 247/489 (50.51%), Postives = 312/489 (63.80%), Query Frame = 1
Query: 1 FRQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGR--TSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYD---ISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVG---ASASPSASILNFVTARAMLPGLSIMLASLGSMKV 1443
F QWYPVL +K DP RAH V+LLGK+LVVW+N EG+W+ FDDRCPHRAAPLTEGR+E DGSLLCAYH WRFD+DGKCL+IPQS+RGGKDEAQ AC KVYPTQVAQDIIWVW ENGPDAGLESA+TP L+PELDD EG+ S RV + DL Y W+ +EN+VDP+HV +HHG Y+ RP + + + PV + V ++ + G + K+ LY VPT+PGWCR+V Q Y + + +R LG+ + S +S K+P W+ H +F++QDMV LH Q LAS G+D S+Y + V+ PA AD V+ +++WI GSGGPAW K CDP LP RE R+ LFD YE HTK+C++CL ALKNIN+ L A K + A S W +LRGARAV A S SAS++N VTARA+LP +++ LASLG++KV
Sbjct: 8 FVQWYPVLGVKHVDPGRAHPVQLLGKNLVVWRNKEGRWSCFDDRCPHRAAPLTEGRIEDDGSLLCAYHAWRFDADGKCLSIPQSDRGGKDEAQPKACAKVYPTQVAQDIIWVWAENGPDAGLESALTPPHLLPELDDEEGLASGRVVPQGVQHTDLAYGWDTMIENLVDPSHVPCAHHGVA--GDRYKDVRP-IDLEPDKEWPVTAT-----------------------VLVENADDAGEL-KMTLYGVPTKPGWCRLVGRQAYVHKYA-PKSKEAKALRKENKRLGKKPSELMVAASIMS----KIPQWLMHASAGIFLYQDMVLLHHQDKT-------LASVGHDGNSTSSYGKAVYTPAPADRAVMAVRKWIATHGSGGPAWDKDCDPTLPEREHKREVLFDYYEGHTKTCSTCLRALKNINKLLAASKTATAVSCTWGLLRGARAVSTPTAVGSRSASVVNAVTARAILPAVALTLASLGAVKV 457
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: Q3MEA6_TRIV2 (Rieske (2Fe-2S) region n=6 Tax=Nostocaceae TaxID=1162 RepID=Q3MEA6_TRIV2) HSP 1 Score: 315 bits (807), Expect = 8.690e-99 Identity = 192/498 (38.55%), Postives = 258/498 (51.81%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQAA-------ACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVR----RSSFFRDTYRTRAGVL--FFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASL--GKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGASASPSASILNFVTARAMLP-GLSIMLASLGSMKVRY 1449
+QWYP+ ++ DP R HA++LLGKD+V+W++ +W F+D CPHR APL+EGRVE DG+LLCAYH WRFD+ G C++IPQS KDE AA +C VYPTQ Q ++WVW E G A +ES + ++PEL+D S +V RDLPY W+ FMENV DPAHV VSHHG + Y+ + + PVR + F + T+ + F C + I +++G L LY PTRPGWCR + QV + + + L F G LPVW+ HV LF+HQDMVFLH Q + K G + V+ P D V+TL++W+K+ GG W++G +PP E+ + LFDV+ HT+ CT C ALKNINR SAA L AV+ AR V A+ ASI L G +I+LA +G R+
Sbjct: 36 KQWYPLAVVEFLDPSRPHAMQLLGKDIVLWRDGSSQWRCFEDFCPHRLAPLSEGRVEADGTLLCAYHAWRFDAQGNCVSIPQS----KDEKTAAKNCESQKSCAVVYPTQERQGLLWVWAEAGEQAKVESQLQTPRIVPELED----NSGKVIKSPWNFRDLPYGWDYFMENVSDPAHVPVSHHGI--IGDRYK------DAKFYDMIPVRPISTQDGFAFEIQPTQGKTVQGIHDFQPPCHMRIVSTSEDGGQLILALYATPTRPGWCRHIGCQV-------FVKNPQGKKPQGLSFFGL---------------PLPVWLVHVLASLFLHQDMVFLHYQEKIIAQKKNG-----------KWLNAVYTPNPQDKMVITLRQWLKNRAGGGIPWAEGYSSDIPPAEKDKQKLFDVWTTHTQHCTVCQDALKNINRLTVLAYISAAICLFLAVILDARTVAMQAALGASIFTLPPVGFWLALGGAILLAVVGYQLKRF 484
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: A0A846FN29_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FN29_9CYAN) HSP 1 Score: 313 bits (802), Expect = 6.660e-98 Identity = 182/471 (38.64%), Postives = 240/471 (50.96%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQS---ERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHG---TRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGA-----SASPSASILNFVT 1383
+QWYP+ + DP R HA++LLG+DLV+W++ G W F+D CPHR APL+EGRVE DG+L+CAYH WRF +DGKC+ IPQS + K+ + + VYPTQ Q ++WVW E+G A LES + +IPEL+D S R Y RDLPY W+ FMENV DPAHV VSHHG R + Y P + E SF F C + I N K+G L LY PTRPGWCR + QV ++ + L F G +P W+ HV LF+HQD+VFLH Q + R + + V+ P D ++TL++W+K GG AW+ GC LP ER + LFDV+ HT+ C C ALKNINR +A A L V+ ARA+ SA + + L+F+T
Sbjct: 38 KQWYPIAVVDFLDPARPHAIQLLGQDLVLWRDGAGIWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRFGADGKCVNIPQSKDPQTEAKNCSNHKSAAVVYPTQERQGLLWVWPESGSQAALESQLQTPRIIPELED----NSGRTVKLYWYVRDLPYGWDFFMENVADPAHVPVSHHGIIGNRYRDANYYDMIPVKQISTQEGF-----SFAITPAGENIEQAVHDFQPPCHMRIASNFKDGGKFILALYASPTRPGWCRQIGCQV-------LVKNEAGKTPPGLAFFGL---------------PMPTWLGHVLSSLFLHQDLVFLHYQEKILAKRNQ---------GEWLKAVYTPNPQDKMIITLRQWLKYRAGGGIAWASGCSSELPMAERDKQKLFDVWSTHTQDCRVCQQALKNINRVKILAYVAAIACLCLGVVVDARAIAVQAALMSADQTVTSLSFLT 468
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: UPI00047934FE (Rieske 2Fe-2S domain-containing protein n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047934FE) HSP 1 Score: 312 bits (799), Expect = 1.400e-97 Identity = 173/448 (38.62%), Postives = 238/448 (53.12%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQS---ERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAV 1338
+QWYPV + D R HA++LLGK+LV+W++ GKW F+D CPHR APL+EGRVE DG+L+CAYH WRFDS+GKC++IPQS + K+ + +C YPTQ Q ++WVW E GP A +ES + ++PEL+D +S + + RDLPY W+ FMENV DPAHV VSHHG + Y+ + +R E + SF F C + I +K+G LVLY PTRPGWCR + QV ++ G++ + L F G +P W+ H+ G LF+HQD+VFLH Q + R + V+ P D V+T ++W++ G W+ GC+ LP ER + LFDV+ HT++C C ALKNINR +AA L V+ AR V
Sbjct: 30 KQWYPVAVVGFLDSSRPHAMQLLGKNLVLWRDGSGKWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRFDSEGKCVSIPQSKDQQTEAKNCSNPKSCAVAYPTQERQGLLWVWAEAGPQAQVESQLRTPRIVPELED----DSGKAVQLSWNVRDLPYGWDFFMENVSDPAHVPVSHHGI--IGNRYKDAKYYDMIRVREMSTQEGFSFEITPVDPSIEQAVHDFQPPCHMRIVSTSKDGGKLILVLYATPTRPGWCRHIGCQVLVKNEA---GKKPK----GLGFFGL---------------PMPTWLGHILGSLFLHQDLVFLHYQEKIIAQRSK---------GKWLDAVYTPNPQDKMVITFRQWLEKRAGGSIPWASGCNSELPHVERDKQKLFDVWTTHTQNCKVCQDALKNINRLTVLTYVTAALCLCLGVIVDARTV 440
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: A0A8J6SPF2_9CYAN (Rieske 2Fe-2S domain-containing protein n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SPF2_9CYAN) HSP 1 Score: 311 bits (797), Expect = 2.790e-97 Identity = 176/448 (39.29%), Postives = 235/448 (52.46%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQS---ERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAV 1338
+QWYPV + DP R HA++LLGKD+V+W++ G+W F+D CPHR APL+EGRVE DG+LLCAYH WRFDS+G C++IPQS + K + +C VYPTQ Q ++WVW E+G +A +ES +IPEL++ +S RV RDLPY W+ FMENV DPAHV VSHHG + Y+ + R E + SF + F C + I K+G L LY PTRPGWCR + QV ++ G+R + L + +P+W+ HV G LF+HQD VFLH Q ILA G D + V+ P + D V+ ++W+ GG W GC+ LP +R + LFDV+ HT+ C C ALKNINR +A V+ ARAV
Sbjct: 30 KQWYPVAVVDFLDPSRPHAIQLLGKDIVLWRDGSGQWRCFEDFCPHRLAPLSEGRVESDGTLLCAYHAWRFDSEGNCVSIPQSIDKQTEAKHCSNKKSCAVVYPTQERQGLLWVWAESGQEAQVESQSRAPRIIPELEE----DSDRVVQLFWNVRDLPYGWDFFMENVADPAHVPVSHHGI--VGSRYKDAKYYDMPRIREMSTQEGFSFAITPTAPTIEQVVHDFQPPCHMRIVSTFKDGGKLILALYASPTRPGWCRHIGGQVFVKNEA---GKRPKG-------------------LGVFGLPMPIWLGHVLGSLFLHQDAVFLHYQEK-------ILAKRGKD--RWLDAVYTPNSQDKMVIAFRQWLSKRAGGGIPWDSGCNSELPSAQRDKQKLFDVWATHTQHCQVCQDALKNINRLSVLAYVAAVVCFGLGVMVDARAV 440
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: UPI001880A753 (Rieske 2Fe-2S domain-containing protein n=2 Tax=Phormidium sp. LEGE 05292 TaxID=2777964 RepID=UPI001880A753) HSP 1 Score: 310 bits (794), Expect = 5.860e-97 Identity = 179/462 (38.74%), Postives = 236/462 (51.08%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQS---ERGGKDEAQAAACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAVGASASPSASILNFV 1380
+QWYPV ++ DP R HA++LLGKD+V+W++ GKW F D CPHR APL+EGRVE DG+LLCAYH WRFD+ G C++IPQS E K +C YPTQ Q ++WVW E+G A LES +I EL++ S R RDLPY W+ F+ENV DPAHV VSHHG + Y+ + +R E + ++ F C + I N +G L LY PTRPGWCR + QV ++ + +V L F G +P+W+ HV LF+HQDMVFLH Q L A + VF P D V+ ++W + G W+ GC+ LPP E+ + LFDV+ HT++C C ALKNINR AA SL AV+ AR++ S + S LNFV
Sbjct: 26 KQWYPVAVVEFLDPTRPHAMQLLGKDVVLWRDGAGKWRCFADACPHRLAPLSEGRVESDGTLLCAYHAWRFDAQGNCVSIPQSKDKETEAKHCTNPKSCAIAYPTQELQGLLWVWAESGSQAELESKEKTPRIILELEE----NSDRAKQLFWNIRDLPYGWDFFIENVSDPAHVPVSHHGI--VGNRYKDAKYYDMIRVREMSTQEGFAYEITPTAPNVAQAIHDFQPPCHMKIVTTNTDGGQLILALYATPTRPGWCRHIGCQV-------LVKNQEGKVSKGLGFFGL---------------PMPIWLGHVLASLFLHQDMVFLHYQEKL---------LAKQQKERWLDAVFTPNPQDKMVIAFRQWWEKRAGGAIPWATGCNAELPPAEQDKQKLFDVWTTHTQNCRVCQDALKNINRLKLLAYILAAISLFLAVIIDARSLAISGQTATSFLNFV 450
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Match: B7JYI1_RIPO1 (Rieske (2Fe-2S) domain protein n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=B7JYI1_RIPO1) HSP 1 Score: 310 bits (794), Expect = 7.180e-97 Identity = 169/448 (37.72%), Postives = 235/448 (52.46%), Query Frame = 1
Query: 4 RQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAPLTEGRVEKDGSLLCAYHGWRFDSDGKCLTIPQSERGGKDEAQA---AACTKVYPTQVAQDIIWVWGENGPDAGLESAVTPAALIPELDDVEGVESSRVTAGAIYQRDLPYSWEIFMENVVDPAHVVVSHHGTRCLEPLYRTTRPKVSVRGAERTPVRRSSFFRDTYRTRAGVLFFFFVCRCFVTIDGNNKNGSMTKLVLYCVPTRPGWCRMVSSQVRFRSYIWMLGRRRRRVRSSLLFLGRTSFCSCFSCLSIAPHKLPVWVQHVFGHLFMHQDMVFLHGQASLGKSRGLILASAGYDISNYAQGVFVPAAADNGVLTLKRWIKDIGSGGPAWSKGCDPALPPRERARDALFDVYEQHTKSCTSCLGALKNINRCLPAVKASAAASLAWAVLRGARAV 1338
+QWYP+ ++ DP R H V+LLGK+LV+W++ +W F+DRCPHR PL+EGRVE DG+LLCAYH WRFD GKC++IPQS+ + +C YPTQ Q ++WVW E+G A ES LIPEL++ +S +V Y RD+P+ W+ FMENV DPAHV VSHHG + Y+ + +R E + +F + F C + I + K+G+ L LY PTRPGWCR + Q+ +S G+T F L +P W+ H+ F+HQD+VFLH Q + +G N+ V+ P D V+TL++W++ GG W++G +P LPP +R + LFDV+ HT+ C C ALKNINR A L +AV+ AR V
Sbjct: 28 KQWYPIAVIEFLDPSRPHPVQLLGKELVLWRDRNNQWRCFEDRCPHRLVPLSEGRVEADGTLLCAYHAWRFDETGKCVSIPQSKDKDTENQHLNNPRSCAIAYPTQEQQGLLWVWPESGDQAEQESQSRKPRLIPELEE----KSDKVVKLFWYVRDMPFGWDYFMENVCDPAHVPVSHHGM--MGSRYKDAKYYNMIREREISTQNGFAFSLEPVAPTIEKAVHDFQPPCLMKISSSFKDGAKFILALYVSPTRPGWCRHIGCQILVKSNE-----------------GKTPKGLAFFAL-----PMPTWLGHILASSFLHQDLVFLHYQEKIIARQGT---------QNWLSAVYTPNPQDKMVITLRKWLEKRAGGGIPWAEGTNPELPPPQRDKQQLFDVWSTHTQHCRVCQDALKNINRTRLFAYIGAGVCLLFAVILDARMV 438 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1009.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1009.88.1 >prot_S-latissima_F_contig1009.88.1 ID=prot_S-latissima_F_contig1009.88.1|Name=mRNA_S-latissima_F_contig1009.88.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=486bp FRQWYPVLSLKDTDPERAHAVELLGKDLVVWKNTEGKWATFDDRCPHRAAback to top mRNA from alignment at S-latissima_F_contig1009:140894..161740- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1009.88.1 ID=mRNA_S-latissima_F_contig1009.88.1|Name=mRNA_S-latissima_F_contig1009.88.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=20847bp|location=Sequence derived from alignment at S-latissima_F_contig1009:140894..161740- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1009:140894..161740- >mRNA_S-latissima_F_contig1009.88.1 ID=mRNA_S-latissima_F_contig1009.88.1|Name=mRNA_S-latissima_F_contig1009.88.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2916bp|location=Sequence derived from alignment at S-latissima_F_contig1009:140894..161740- (Saccharina latissima SLPER63f female)back to top |