mRNA_S-latissima_F_contig1009.87.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1009.87.1
Unique NamemRNA_S-latissima_F_contig1009.87.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1009.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1009contigS-latissima_F_contig1009:122896..123268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.67389-UTR-S-latissima_F_contig1009:122895..1228991622815367.67389-UTR-S-latissima_F_contig1009:122895..122899Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1009 122896..122899 +
1693924837.246316-UTR-S-latissima_F_contig1009:122895..1228991693924837.246316-UTR-S-latissima_F_contig1009:122895..122899Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1009 122896..122899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.6890414-CDS-S-latissima_F_contig1009:122899..1232681622815367.6890414-CDS-S-latissima_F_contig1009:122899..123268Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1009 122900..123268 +
1693924837.261237-CDS-S-latissima_F_contig1009:122899..1232681693924837.261237-CDS-S-latissima_F_contig1009:122899..123268Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1009 122900..123268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1009.87.1prot_S-latissima_F_contig1009.87.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1009 122900..123268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1009.87.1

>prot_S-latissima_F_contig1009.87.1 ID=prot_S-latissima_F_contig1009.87.1|Name=mRNA_S-latissima_F_contig1009.87.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=123bp
MYVDSWTILLFPFSSTFPPRINPETSHYQLQSHRHQDGALRPDIDRRVLP
HLGRVSSGAAMAPMPQLAPWDTSRPTSNRTLTLAICSNSVNWYILLCSPK
PRVTRLTSVYGANNPPPNSHTTF
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mRNA from alignment at S-latissima_F_contig1009:122896..123268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1009.87.1 ID=mRNA_S-latissima_F_contig1009.87.1|Name=mRNA_S-latissima_F_contig1009.87.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=373bp|location=Sequence derived from alignment at S-latissima_F_contig1009:122896..123268+ (Saccharina latissima SLPER63f female)
TCCGATGTACGTCGATTCGTGGACTATCCTGCTCTTCCCTTTCTCATCTA
CATTCCCCCCCCGGATTAATCCGGAAACGTCGCACTATCAGCTCCAATCT
CACCGTCATCAAGATGGCGCTCTCCGTCCTGATATCGACCGCCGCGTTCT
CCCACACCTCGGTCGCGTGTCTTCCGGCGCTGCTATGGCTCCCATGCCCC
AGCTCGCGCCCTGGGATACCTCCAGACCTACATCAAACCGAACGCTTACC
CTCGCAATATGTTCCAACAGCGTGAACTGGTATATATTGTTGTGCTCACC
GAAACCTCGCGTCACCCGTCTCACATCAGTATATGGTGCTAACAACCCCC
CTCCCAACTCCCACACCACCTTC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1009:122896..123268+

>mRNA_S-latissima_F_contig1009.87.1 ID=mRNA_S-latissima_F_contig1009.87.1|Name=mRNA_S-latissima_F_contig1009.87.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=738bp|location=Sequence derived from alignment at S-latissima_F_contig1009:122896..123268+ (Saccharina latissima SLPER63f female)
ATGTACGTCGATTCGTGGACTATCCTGCTCTTCCCTTTCTCATCTACATT
CCCCCCCCGGATTAATCCGGAAACGTCGCACTATCAGCTCCAATCTCACC
GTCATCAAGATGGCGCTCTCCGTCCTGATATCGACCGCCGCGTTCTCCCA
CACCTCGGTCGCGTGTCTTCCGGCGCTGCTATGGCTCCCATGCCCCAGCT
CGCGCCCTGGGATACCTCCAGACCTACATCAAACCGAACGCTTACCCTCG
CAATATGTTCCAACAGCGTGAACTGGTATATATTGTTGTGCTCACCGAAA
CCTCGCGTCACCCGTCTCACATCAGTATATGGTGCTAACAACCCCCCTCC
CAACTCCCACACCACCTTCATGTACGTCGATTCGTGGACTATCCTGCTCT
TCCCTTTCTCATCTACATTCCCCCCCCGGATTAATCCGGAAACGTCGCAC
TATCAGCTCCAATCTCACCGTCATCAAGATGGCGCTCTCCGTCCTGATAT
CGACCGCCGCGTTCTCCCACACCTCGGTCGCGTGTCTTCCGGCGCTGCTA
TGGCTCCCATGCCCCAGCTCGCGCCCTGGGATACCTCCAGACCTACATCA
AACCGAACGCTTACCCTCGCAATATGTTCCAACAGCGTGAACTGGTATAT
ATTGTTGTGCTCACCGAAACCTCGCGTCACCCGTCTCACATCAGTATATG
GTGCTAACAACCCCCCTCCCAACTCCCACACCACCTTC
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