mRNA_S-latissima_F_contig1007.75.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1007.75.1
Unique NamemRNA_S-latissima_F_contig1007.75.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1007.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1007contigS-latissima_F_contig1007:24455..24998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size513
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.2810502-UTR-S-latissima_F_contig1007:24454..244851622815366.2810502-UTR-S-latissima_F_contig1007:24454..24485Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1007 24455..24485 +
1693924834.8074188-UTR-S-latissima_F_contig1007:24454..244851693924834.8074188-UTR-S-latissima_F_contig1007:24454..24485Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1007 24455..24485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.2967687-CDS-S-latissima_F_contig1007:24485..249981622815366.2967687-CDS-S-latissima_F_contig1007:24485..24998Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1007 24486..24998 +
1693924834.8162413-CDS-S-latissima_F_contig1007:24485..249981693924834.8162413-CDS-S-latissima_F_contig1007:24485..24998Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1007 24486..24998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1007.75.1prot_S-latissima_F_contig1007.75.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1007 24486..24998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1007.75.1

>prot_S-latissima_F_contig1007.75.1 ID=prot_S-latissima_F_contig1007.75.1|Name=mRNA_S-latissima_F_contig1007.75.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=171bp
MTQQCTYPSDPPCHIPVVQGGTSTLLCPLHAPYGLDVQPEGRAEDREERL
RRAGLVPPRRAHEGGGSGSAASAAPVSNSRLADKQFKCMRRGGCMEGKDF
QFHERRGPYHEAGVVRVAYFNPSREKFDGFCPTHAAEAAQSLARAMTTWN
KSDKKKRQRDRGGKTGGQGRR
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mRNA from alignment at S-latissima_F_contig1007:24455..24998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1007.75.1 ID=mRNA_S-latissima_F_contig1007.75.1|Name=mRNA_S-latissima_F_contig1007.75.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=544bp|location=Sequence derived from alignment at S-latissima_F_contig1007:24455..24998+ (Saccharina latissima SLPER63f female)
AACTGTGGACATATGCAGGCTCACCAGAGACATGACCCAGCAGTGCACCT
ACCCGAGCGACCCACCTTGCCACATACCGGTGGTACAAGGTGGTACATCG
ACACTCCTGTGCCCTCTGCACGCTCCCTATGGACTCGATGTACAGCCAGA
AGGTCGAGCAGAAGACCGAGAGGAACGGCTACGCCGGGCGGGACTCGTTC
CACCGCGCCGTGCGCATGAAGGCGGGGGCAGTGGGTCGGCGGCGTCTGCG
GCGCCCGTTTCGAACTCACGCTTGGCGGATAAACAGTTCAAGTGCATGCG
TCGCGGTGGCTGCATGGAAGGCAAGGATTTCCAGTTCCACGAGAGGCGAG
GACCGTACCACGAGGCAGGCGTAGTGCGTGTTGCGTACTTCAACCCGAGC
CGCGAGAAGTTCGATGGTTTCTGCCCAACCCACGCCGCAGAGGCCGCGCA
GTCACTCGCGAGAGCCATGACGACGTGGAACAAGAGTGACAAGAAGAAGA
GGCAGAGGGATAGGGGAGGGAAGACTGGCGGGCAAGGCAGACGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1007:24455..24998+

>mRNA_S-latissima_F_contig1007.75.1 ID=mRNA_S-latissima_F_contig1007.75.1|Name=mRNA_S-latissima_F_contig1007.75.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1026bp|location=Sequence derived from alignment at S-latissima_F_contig1007:24455..24998+ (Saccharina latissima SLPER63f female)
ATGACCCAGCAGTGCACCTACCCGAGCGACCCACCTTGCCACATACCGGT
GGTACAAGGTGGTACATCGACACTCCTGTGCCCTCTGCACGCTCCCTATG
GACTCGATGTACAGCCAGAAGGTCGAGCAGAAGACCGAGAGGAACGGCTA
CGCCGGGCGGGACTCGTTCCACCGCGCCGTGCGCATGAAGGCGGGGGCAG
TGGGTCGGCGGCGTCTGCGGCGCCCGTTTCGAACTCACGCTTGGCGGATA
AACAGTTCAAGTGCATGCGTCGCGGTGGCTGCATGGAAGGCAAGGATTTC
CAGTTCCACGAGAGGCGAGGACCGTACCACGAGGCAGGCGTAGTGCGTGT
TGCGTACTTCAACCCGAGCCGCGAGAAGTTCGATGGTTTCTGCCCAACCC
ACGCCGCAGAGGCCGCGCAGTCACTCGCGAGAGCCATGACGACGTGGAAC
AAGAGTGACAAGAAGAAGAGGCAGAGGGATAGGGGAGGGAAGACTGGCGG
GCAAGGCAGACGGATGACCCAGCAGTGCACCTACCCGAGCGACCCACCTT
GCCACATACCGGTGGTACAAGGTGGTACATCGACACTCCTGTGCCCTCTG
CACGCTCCCTATGGACTCGATGTACAGCCAGAAGGTCGAGCAGAAGACCG
AGAGGAACGGCTACGCCGGGCGGGACTCGTTCCACCGCGCCGTGCGCATG
AAGGCGGGGGCAGTGGGTCGGCGGCGTCTGCGGCGCCCGTTTCGAACTCA
CGCTTGGCGGATAAACAGTTCAAGTGCATGCGTCGCGGTGGCTGCATGGA
AGGCAAGGATTTCCAGTTCCACGAGAGGCGAGGACCGTACCACGAGGCAG
GCGTAGTGCGTGTTGCGTACTTCAACCCGAGCCGCGAGAAGTTCGATGGT
TTCTGCCCAACCCACGCCGCAGAGGCCGCGCAGTCACTCGCGAGAGCCAT
GACGACGTGGAACAAGAGTGACAAGAAGAAGAGGCAGAGGGATAGGGGAG
GGAAGACTGGCGGGCAAGGCAGACGG
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