mRNA_S-latissima_F_contig1006.73.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1006.73.1
Unique NamemRNA_S-latissima_F_contig1006.73.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.200e-88
Identity = 134/206 (65.05%), Postives = 163/206 (79.13%), Query Frame = 3 
Query:   99 MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYFGDKMTVADLTVARKIKYLKDGTLDGVPTNIADS-YPKVIALYDSIVGEPKIAAFIAKHAK 713
            MAPKL+LTYF + G AE IRWALE SG EWEDKRLT EEFGV+KPSLPNGQ+PVL +DGY LPQ + ILRYVGKLGGL P+DDLEAAKCDA +D + DFY +  P + EK++ ++LEM  D+  N+ P WL N+EK L+ TEG+YF +KM+VAD+ +  ++K L+DG  +GVPT I DS YP + ALYDSIVGEPKIAAFIAKH K
Sbjct:    1 MAPKLVLTYFDIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDGYTLPQSMTILRYVGKLGGLHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFAEKMSVADIMITTRLKTLRDGNYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAFIAKHDK 206
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BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 2.900e-86
Identity = 132/205 (64.39%), Postives = 159/205 (77.56%), Query Frame = 3 
Query:   99 MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYFGDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFIAKHAK 713
            MAPKLIL YF   G AE IRWALE   LEWEDKRLTREEFG LKPSLPNGQVPVL IDG+ L Q +AILRYVGKLGGL P+DDL AAKCDA +D  TD + +  P F EK+E +K+EMR D+  NF P WL N+EK LS T+G +F DKMTVAD+ +A ++  +++G LDG+PT IADSYP + A+ D++V EPK+AAF+AKHAK
Sbjct:    1 MAPKLILKYFDKAGAAEPIRWALEKGSLEWEDKRLTREEFGALKPSLPNGQVPVLSIDGFELAQSMAILRYVGKLGGLNPSDDLAAAKCDAIMDCVTDLHINIRPSFMEKDEAKKMEMRADLAANFIPKWLSNMEKQLSSTDGTFFFDKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFLAKHAK 205
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BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.880e-55
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 3 
Query:   99 MAP--KLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAF 695
            MAP   L LTYF   G AE +R AL ++G  WEDKR++  EF  LKP LPNGQ+P+L + G VLPQ  A LRYVGKL GL+P D LEAA  DA +D   D +    P  ++K++ +++EMR+++V +F PTWL N+EK L+   G YF G K+++ D+ V  ++ +LK+G+LDG+PT+I D YP + AL + +  EP IA +
Sbjct:    1 MAPTTSLTLTYFDFAGPAEPVRMALAMTGQPWEDKRVSFSEFPALKPGLPNGQLPILEVGGKVLPQSGAQLRYVGKLAGLYPEDALEAALADAAVDSVGDNHMKLAPTVQQKDKVQQMEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKY 202
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.760e-54
Identity = 90/201 (44.78%), Postives = 132/201 (65.67%), Query Frame = 3 
Query:   99 MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFI 698
            M PKLIL+YF +  + E +R AL +SG  WEDKR+++EEF  +KPSLP  Q+P L + G ++PQ LA +RY+GK+GGL+  D +EAA  DA ++   D + H  P   E++  +KLEMRK M +N+ PTWL N+E+ L    G YF G K+++ D+ V  ++ +LK G LDG+P  I D +P + AL  S++ E KI  ++
Sbjct:    1 MGPKLILSYFDIPALGEPLRLALAMSGQAWEDKRVSKEEFMAIKPSLPYNQLPTLEVGGTLIPQSLAQMRYIGKIGGLYSEDPIEAAFADAAMEAVIDMHFHLRPTVHEQDPAKKLEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYL 201
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BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.020e-51
Identity = 91/206 (44.17%), Postives = 132/206 (64.08%), Query Frame = 3 
Query:   99 MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFIAKHAK 713
            MAP + LTYF    + E +R AL  SG+EW D R+  E++  LKP+LP  Q+PVL +DG V+PQ LAILRYVGK+G L+PTD ++AA  D+  D  +D   +      EK+  +K ++RKD+VE   PTWL N+EK L    G YF GDK+++ D+ V  ++ +L DGT +GVP+ + D  P V +L   ++ EP+I A++ +  K
Sbjct:    1 MAP-MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPTLPYQQMPVLEVDGAVIPQSLAILRYVGKIGNLYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPK 205
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.270e-50
Identity = 91/207 (43.96%), Postives = 132/207 (63.77%), Query Frame = 3 
Query:   99 MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLD-GVPTNIADSYPKVIALYDSIVGEPKIAAFIAKHAK 713
            MAP + LTYF +  + E++R AL  SG+EW D R+T EE+  LKP+LP  Q+PVL +DG V+PQ  AILRYVGK+G L+PTD ++AA  D+  D   D + H    F EK+   K ++ KD+VE   P WL N+EK L    G YF GDK+++ D+ V  ++ +L DGT D  VP+ I + +P + +L   ++ EP+I A++ +  K
Sbjct:    1 MAP-MKLTYFDIAALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPTLPYQQMPVLEVDGAVIPQTFAILRYVGKMGDLYPTDPIQAAFADSATDAVNDMHGHMRAIFFEKDADAKTQLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPK 206
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 170 bits (431), Expect = 2.620e-46
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 3 
Query:  117 LTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSK--TEGVYFGDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFIAKHAK 713
            L+YF  +G+AE IR A  + G+++ED R  RE++  LKP  P G VP L I   V  Q  AILRY GKL GL+PTD +EA   D  +D   D + H  P  +E++E +K+EMRK + E   P WL    KH+ +  + G   GD +T+ADL +   I  L  G LDG+P  IA+ +PKV AL + +  + K+ AF AKHAK
Sbjct:    5 LSYFDFKGVAEPIRLAFAVGGIDFEDHRFQREDWPQLKPKTPYGSVPTLTIGDRVYAQSNAILRYAGKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKVKAFEAKHAK 205
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BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: A0A0L6V4E8_9BASI (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V4E8_9BASI)

HSP 1 Score: 160 bits (405), Expect = 1.470e-42
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  105 PKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAF 695
            P   LTYF  +G AE IR AL +SG+ + D+RLTRE+F   K SLP GQVPVL +D  V+PQ +AIL+Y+G+L GL+P+D  EA   D  I+++ DFY   + ++    +  K EM+K ++    P  L  +EK+L K+   +  GDK+T+ADL +   I   K G LDG P  + D YP V  LY ++ G  K+A++
Sbjct:    2 PSYKLTYFDAKGRAESIRLALHISGIPFTDERLTREQFASKKESLPFGQVPVLTVDDKVIPQEVAILQYIGRLSGLYPSDREEALNVDIMINVTNDFYGSMIVFYMPDGQA-KTEMKKMVIGEKIPKLLDYLEKNLGKSGTTFCAGDKLTIADLRLYSIITAFKSGMLDGFPVELVDKYPHVTKLYHAVHGHEKVASW 198
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.350e-40
Identity = 78/193 (40.41%), Postives = 120/193 (62.18%), Query Frame = 3 
Query:  111 LILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF-GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKI 686
            + LTYF + G AE IR A  + G+ ++D+R++R+EF  +K  LP  Q+P+L +D  V PQ  AILRY GK+GGL+P+D + AAK DA ID   D  A   P   E N  RKL MRK++ E   P WL+ +E+ L +    +F G+++T+ DL +  ++K+L+ G L G+P  I  ++ +V A  +++   PK+
Sbjct:    4 ITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKV 196
[Close]
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Match: A0A2N5TJU4_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TJU4_9BASI)

HSP 1 Score: 152 bits (385), Expect = 1.140e-39
Identity = 85/205 (41.46%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:  105 PKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNGQVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFYAHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYF--GDKMTVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFIAKHAK 713
            P   +TYF ++G AE IR AL  SG+ + D+RLTRE+F   K SLP GQVPVL +D  V+PQ +AIL+Y+G+  GL+P++  EA K D  +++S D YA  L ++   +   K  M+K +VE   P      E+HL+K  G  F  GDK+++AD+ +   +  +K G   G+PTN+AD YP +  LY +I    K+A++    AK
Sbjct:    2 PSYKVTYFDIKGRAETIRLALHCSGIPFTDERLTREQFAERKESLPFGQVPVLTVDDQVIPQEVAILKYIGRQSGLYPSNREEALKVDIMMNVSDDIYAAMLAFYMPADNPGKEIMKKMVVEEKLPKIFGYFERHLAKY-GTSFCAGDKISIADIRLYCILYTIKSGIHAGLPTNLADKYPHISKLYQAIDTHEKVASWNKSQAK 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1006.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E8_9PHAE1.200e-8865.05Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A6H5KRV2_9PHAE2.900e-8664.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1N8E7_9PHAE2.880e-5548.02Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
B1N8E6_9PHAE1.760e-5444.78Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
D8LHF0_ECTSI3.020e-5144.17Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI3.270e-5043.96Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A061SAH2_9CHLO2.620e-4643.78Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
A0A0L6V4E8_9BASI1.470e-4242.93Uncharacterized protein n=1 Tax=Puccinia sorghi Ta... [more]
D7FPV3_ECTSI1.350e-4040.41Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A2N5TJU4_9BASI1.140e-3941.46Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1006contigS-latissima_F_contig1006:153829..158979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue9.5e-35
Seed eggNOG ortholog157072.XP_008864522.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons6
Model size1626
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1006.73.1prot_S-latissima_F_contig1006.73.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1006 154739..158881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.9659114-UTR-S-latissima_F_contig1006:153828..1547381622815365.9659114-UTR-S-latissima_F_contig1006:153828..154738Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1006 153829..154738 -
1693924834.569343-UTR-S-latissima_F_contig1006:153828..1547381693924834.569343-UTR-S-latissima_F_contig1006:153828..154738Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1006 153829..154738 -
1622815366.0507627-UTR-S-latissima_F_contig1006:158881..1589791622815366.0507627-UTR-S-latissima_F_contig1006:158881..158979Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1006 158882..158979 -
1693924834.65749-UTR-S-latissima_F_contig1006:158881..1589791693924834.65749-UTR-S-latissima_F_contig1006:158881..158979Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1006 158882..158979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.978692-CDS-S-latissima_F_contig1006:154738..1549091622815365.978692-CDS-S-latissima_F_contig1006:154738..154909Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 154739..154909 -
1693924834.5846107-CDS-S-latissima_F_contig1006:154738..1549091693924834.5846107-CDS-S-latissima_F_contig1006:154738..154909Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 154739..154909 -
1622815366.0002887-CDS-S-latissima_F_contig1006:155280..1553411622815366.0002887-CDS-S-latissima_F_contig1006:155280..155341Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 155281..155341 -
1693924834.5974786-CDS-S-latissima_F_contig1006:155280..1553411693924834.5974786-CDS-S-latissima_F_contig1006:155280..155341Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 155281..155341 -
1622815366.0112069-CDS-S-latissima_F_contig1006:155836..1558771622815366.0112069-CDS-S-latissima_F_contig1006:155836..155877Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 155837..155877 -
1693924834.6051476-CDS-S-latissima_F_contig1006:155836..1558771693924834.6051476-CDS-S-latissima_F_contig1006:155836..155877Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 155837..155877 -
1622815366.0221097-CDS-S-latissima_F_contig1006:156614..1567301622815366.0221097-CDS-S-latissima_F_contig1006:156614..156730Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 156615..156730 -
1693924834.623409-CDS-S-latissima_F_contig1006:156614..1567301693924834.623409-CDS-S-latissima_F_contig1006:156614..156730Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 156615..156730 -
1622815366.032047-CDS-S-latissima_F_contig1006:157786..1578791622815366.032047-CDS-S-latissima_F_contig1006:157786..157879Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 157787..157879 -
1693924834.6332014-CDS-S-latissima_F_contig1006:157786..1578791693924834.6332014-CDS-S-latissima_F_contig1006:157786..157879Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 157787..157879 -
1622815366.0414274-CDS-S-latissima_F_contig1006:158745..1588811622815366.0414274-CDS-S-latissima_F_contig1006:158745..158881Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 158746..158881 -
1693924834.64134-CDS-S-latissima_F_contig1006:158745..1588811693924834.64134-CDS-S-latissima_F_contig1006:158745..158881Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1006 158746..158881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1006.73.1

>prot_S-latissima_F_contig1006.73.1 ID=prot_S-latissima_F_contig1006.73.1|Name=mRNA_S-latissima_F_contig1006.73.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=206bp
MAPKLILTYFGVEGIAEEIRWALELSGLEWEDKRLTREEFGVLKPSLPNG
QVPVLVIDGYVLPQRLAILRYVGKLGGLFPTDDLEAAKCDAGIDLSTDFY
AHGLPYFKEKNETRKLEMRKDMVENFFPTWLKNIEKHLSKTEGVYFGDKM
TVADLTVARKIKYLKDGTLDGVPTNIADSYPKVIALYDSIVGEPKIAAFI
AKHAK*
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mRNA from alignment at S-latissima_F_contig1006:153829..158979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1006.73.1 ID=mRNA_S-latissima_F_contig1006.73.1|Name=mRNA_S-latissima_F_contig1006.73.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=5151bp|location=Sequence derived from alignment at S-latissima_F_contig1006:153829..158979- (Saccharina latissima SLPER63f female)
CCAGCAAACAACACGCAACTAACGACATAAACTACCCAGACACAGACAAC
ACGACCAACAACCGAAGACACGACCACCGACCGACGTCACCCAGCAGCAT
GGCTCCCAAGCTGATCCTCACGTACTTTGGCGTCGAGGGCATCGCTGAGG
AGATACGCTGGGCGTTGGAGCTGTCAGGTCTCGAGTGGGAGGATAAGAGG
CTCACGCGGGAAGAGTTTGGCGTTCTCAAGCCCAGTGAGTATCCCATATA
TTTGGATGCAAGGTTCCCTCTTACTTGCACGTTAATCAAGCGCGAGAACC
GGCACTTTTATAGCGCTAGCGTCTTGGACCTCCCGGCCGCTGTTTAGGTG
CTCTAGCGTCTGATACCGGTGGCTGCTATTTGGTGTGCTTGCAAGGCTTT
TGATGGGATGAAAAGCGTTCGGCCTACACACGTTAACGACGCCCCCTTCG
CTTCCAGGCGTAACGATTACTCAAAAGTCCTCAAGCAAGTTGCCGACACT
TTTCCTCAAAGCATTACTTTAGCCGCTCGCAGAGTAACCTAGTGGCACTT
CAATGCCAGCGCAAGTGCGTACTACTCTGTGTAGCGGGCTGTGGGCTCGG
TTTTTATGCGTACGTACAAATCCGATGTTTCCCCGACGGGGGAAAGATCC
CGAACTTGGAATCCCCAGGGATGTATCTGCTATTTGTTACACCTCCTCCA
ACAAGTAAATGTTGCCAACAATAATGGCCGGGCAGGTTTGAGGATTGATG
TGGCATGCCATGATGAATGAAGAGCATATCGTTTATGAAAAGGTACTATA
TTACCAGTACTACTGTAGTATGGTACTCTACGTAGTACCACAGTATGTAC
ACTGCGGCGCTTGGGCTGTTTTCCTGTGGCGCGTCCCAGCAATGTTTTGA
AACGTCAGAGGGGGCTCCACTGCATACGGATTCGTTTGTGAGCTACGTAC
ATATAGACTCTTCTATTGATTTTCCCCCGGGGAATATTTACCAGCAACTA
CCGTCAGGTCAAATAATCCGTTCTCTTTCCACGCATAGATGGAGACGACT
CCCTAATATCCTGGTCAACTTTACCGCCACGACATGTCGTGTCTTGGCAG
GCCTACCGAACGGGCAGGTGCCTGTGCTCGTGATTGATGGCTACGTTCTC
CCGCAGAGGTTGGCTATCCTTCGCTATGTGGGAAAACTTGGCGGTGAGAC
GTTAGATTACTGTGTATAGTAGTGGTAAAACAATAATAGTAGTAGAAGCA
GTCGTAGCAGTAGCGTAATAGCTTACAAAGTTGTATCCAAGTACTCTACT
TCGGATTACCACGTTATGTATATACGTGTGAAAATTACGATGTCATGATA
TAGGGTGCTGGTACTGCACAAACACGGGTATACTCTACTGTAACTATCCG
ATACCAGGTAATAGAGGACCTTTTAGTAGCCGTGCAGTGTACTTGGCATA
CCCTACGTACTCAGATCGGGAAAACATGTTCTACTGATACAATATGACTA
CGTACATAGGAAAAAAAATGAGCCCTTCAGAGAGTAGAATATGTAGTGGT
CCGAACCAGACAAGGACAGGTGGCGACTTGTTTACCATGATGCACGTCTC
ACTCTACCTCCCGGCATGTTTGGAGCGTGCGCTATTTGGGGAAACTCGCC
AGGCGCCGATGAAAACTCGGCTAGCACAAATTATGTTGCTCTTGAGCAAG
AGCGTTGTCCGGTAGAGGCTGACAAGTTTGGCATATTATCTCCTCAACGT
CGTGTGCATTCACATCTGACCGCCTGCTTGCCTTGAAAGTATAGAGGCGT
GGGCGTGCGCTGTGAAGCGTCGCATCTTCGATCCATTTTCGGAGTTCTCC
GGGCGGACTTGCTTCCCTGCTGAAGTGTGTTGAATCCATATGTCTGCATA
CCATGCATCATGCAGCCGTTTAGATGGGCTAGCGTTATGGTACCCGCATT
AGTGCCCCCTTGGGGAAGGGTTGTCTCGGTCCTTCTGCCAGAAGACACGC
TATTGTCCCTTATGAAGGAGTATTGCCCCGATGAATTCTGCCAGAAGACA
CAGTGTGAGAAAAGAAGCTACCGTATAACACCAAACACATGAGAGTGATT
CACACGATTCGCCAGAGACACCCTGCAGAACAATGTTCGAGCTCCACAGT
ACGTCGACACTGCCTCGTCTGCCTCGCATCCTAGCAACTCCCCCCATCGT
TCGTGTATGCGCCGCACGCGGGATAATATGGGTTCCTTCGATTGTTCAGG
ACTGTTCCCTACCGATGACCTCGAGGCGGCCAAGTGCGACGCCGGGATCG
ATCTATCCACCGACTTTTATGCGCACGGCCTGCCATATTTCAAAGAGAAG
AACGAGACCAGGAAGGTACCGAAAAGTGTATAACCACACACGGCGGTGGT
ACTTTAGTGAGAATGCCTGTAGTATCATACTCGAAGTATGTGTCTACAGT
ATATGCGCACCACACTCGTGTATAGATCTGGCTGAAACTATCGGGCGAAA
CGGACGAAGAGTGCGCGCCACCAGCGAACGCTATTGGCCGTTCTGTTACG
TGTGGCGTGCTCCGGTCCTCACCGCGTTGGTGTTCTCCTCGCCTAAGGTG
GATTCGCGTCACTCATCCTGTACTATACTTCGTGCTCTACTGTAACTTAT
AACGCAGCCGACGGGCAGACCCTCCCTCCCTCCCTCCCTCCCTCCCACCC
TCCCTCCCTCCCTCCCGCCCTCTCTCGACACCAAATCCGACGTCGATATC
GGTACCCATTCCATAAGATAAGGACACGCTGTCAAGCTTTAAATTATAAC
AGCGTCGGCTCGACCCTAGGTTTTACGTGCGGTGACGACTCGTTCAGAAA
TAATGTTTTGGTTTCTTAACGCGTCTTTGATGTATGGTACGGGCTTCGTT
GATGGGTTTGAACCACGAGGGTGAAGAGGGGGTCTGTCCGTTCGTGTCCC
ACTAACCTCGCGATTCAGTGGATTTCCCCAAACCCTAACTCGGGCGTTTC
GATAACTACTACCTCATTGCTTGTGTCTCGGCGGCGGACCCCCCCCCTGA
AATAATATGTATCCGTCGCCATTCCTGTGACCACGACCTGGTGGGGACTC
AGCTGGAAATGCGCAAGGATATGGTGGAGAACTTTTTTCCCACGTGAGTC
TCTCGACGTTGTGTTTTCGTTTGAGTACGACCTCCGAACTGTTGGTATTG
CCGTTCCGTTAGGTTTCGCGTGTATGCTCCATGCCCCGAAAATATCGTTG
GCGACGAACAGGCAGTGGCGCATCACAAAGTTAAACGTAGCCGAAGGTAG
CGTATTGGCATATTCTCGTGGTGAGATGGGCTACCGTCGGTCGTCACACG
GTCGGCACAAGAAGGCACGATCCAACCCTAGCCCAACCATTGTATTTCGG
CCCGTGCTACGATTCGGGTGGTCTTTCCATTTTTAAACCTCACCACCTCT
GTGCCTTACCTGACGTTGTGTTTGTTGCGAGATCTTGAGTCCCCCGACAA
CTACTACTACTCTACGACTACAACTACTGCTGAAATGTACTTGATGATGG
TTGATTCCAGTAAGCGTAAACCTATAACGCGGGGGCGAATGTTCTACTGT
TGCTTGCCGCCCGCTTCAATAAACCGGTGGTATGTCAGGTGGCTCAAGAA
TATCGAGAAGCACCTTTCCAAAACCGAAGGCGTCTACTTCGGCGACAAGG
TGAAACACCAATACGCCAACCTACATCGCCATGCAGCGGGTACCGGGGAA
TACCCACGGTTTGGTGTCGGGCCCTAACATTTCCCGTGGTCTACGAGCTG
ACCTTGGAAAACGGGAAGTGTTCGTGTTGAAATGTTGATGTTCCGAACCT
CTGTTTGGTTTCCTCTGCTCTTAGAAGGAACTGATTGTTCGGCAGTCAGT
GCCTTCTAACACGTATACTCTGTCTGGAAGTTGGTTCTCGTTTCCCTGCT
TGCATTGTGTGACGATTTTGTTTCTTCTGCCCGCACTCCCTCCCGCTACG
CCTTTTAGAGCCATCTTCCTCCTCGTCCCTCCGCTGTTACATTCGCTCTT
CAACCCGCTTTCTCGGGCAGATGACTGTGGCTGACCTCACGGTCGCTCGC
AAGATCAAGTATCTCAAAGACGGCACTCTGGACGGCGTTCCCACCAACAT
CGCTGACTCCTACCCTAAGGTCATCGCTCTCTACGACAGCATTGTCGGAG
AGCCGAAGATCGCAGCGTTCATAGCCAAGCACGCCAAGTAGAAGCACTGC
ATTTTGGGTCTGAGAGCATCCGAGTGGGCCCGTGTGTCCTCCGGTCAATG
TTTCAATTTTGCTTCAGAGGGACATAGTAAAGTACAAACATGGGGGATTT
TGCGTTTCCTCTTCAACCCTGAGTTCCAAAGAACGCTGGGTTCTGCGAGA
ACGTGCTCACTACTGCCCACTCAATCGTGTTTTCGTTGTTGGAAAGTCGT
CTTACGTCAATCATTCGCGAAATGCTTTACGCTCTTTTACCATGTTACGA
TGCACACGGCTTGTTCCATGTTGTTGTGGGGTGCGTACGTAGCTCTGTAG
GGCATGCCATATGTTTGTAACTTGTACCATAAATTTTGAGCACGTACTGT
ACCTCTACCCTCGGGTATGGTTGCATTTATTTGTTTGAGGGTAAACGTCC
AAACGCTTTGTGGCTCGGGGAAGGAAGAGCCAAGGCCAATGTTCGACTGA
TATCTTACGTTTTGGGGAGAAAGCCGCTGAAGAATGTAGGCCTGTCGCGA
GCTGCATACCTGCCTGGTTCCACCGCCGCGGAAGTAACGACGAAAAAAAT
GTGGGACGCGCCAATATATGACGTTCTCATGTGCCCAAAACAGCACCCGA
CATACGGAGGGTTTCGTTTTGCGACCCTCCTGTGGTGATGTATGGGGCAA
TGTATTCCATGAAAGCGAAAACAACACAGCTAGAACACGTCTTGTGTTTC
AAATTAAACACTTGGCGAGCCTTCCCGCCCACCCTGGTCATAATAGTTTC
ACGAGCTCGGAAGGAAGTATGCATTATAAATAAACTGATTTCGACGCTCA
AGACGTAAAAGAAGAGAGCCAGCATGATAATGTTGGTCCATGAGCTGGAC
ATATCGTAGGACTGGTCGTGCAAAGAACAACCTTGTCCCCTCGGGAGTCG
G
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Coding sequence (CDS) from alignment at S-latissima_F_contig1006:153829..158979-

>mRNA_S-latissima_F_contig1006.73.1 ID=mRNA_S-latissima_F_contig1006.73.1|Name=mRNA_S-latissima_F_contig1006.73.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1236bp|location=Sequence derived from alignment at S-latissima_F_contig1006:153829..158979- (Saccharina latissima SLPER63f female)
ATGGCTCCCAAGCTGATCCTCACGTACTTTGGCGTCGAGGGCATCGCTGA
GGAGATACGCTGGGCGTTGGAGCTGTCAGGTCTCGAGTGGGAGGATAAGA
GGCTCACGCGGGAAGAGTTTGGCGTTCTCAAGCCCAATGGCTCCCAAGCT
GATCCTCACGTACTTTGGCGTCGAGGGCATCGCTGAGGAGATACGCTGGG
CGTTGGAGCTGTCAGGTCTCGAGTGGGAGGATAAGAGGCTCACGCGGGAA
GAGTTTGGCGTTCTCAAGCCCAGCCTACCGAACGGGCAGGTGCCTGTGCT
CGTGATTGATGGCTACGTTCTCCCGCAGAGGTTGGCTATCCTTCGCTATG
TGGGAAAACTTGGCGGCCTACCGAACGGGCAGGTGCCTGTGCTCGTGATT
GATGGCTACGTTCTCCCGCAGAGGTTGGCTATCCTTCGCTATGTGGGAAA
ACTTGGCGGACTGTTCCCTACCGATGACCTCGAGGCGGCCAAGTGCGACG
CCGGGATCGATCTATCCACCGACTTTTATGCGCACGGCCTGCCATATTTC
AAAGAGAAGAACGAGACCAGGAAGGACTGTTCCCTACCGATGACCTCGAG
GCGGCCAAGTGCGACGCCGGGATCGATCTATCCACCGACTTTTATGCGCA
CGGCCTGCCATATTTCAAAGAGAAGAACGAGACCAGGAAGCTGGAAATGC
GCAAGGATATGGTGGAGAACTTTTTTCCCACCTGGAAATGCGCAAGGATA
TGGTGGAGAACTTTTTTCCCACGTGGCTCAAGAATATCGAGAAGCACCTT
TCCAAAACCGAAGGCGTCTACTTCGGCGACAAGGTGGCTCAAGAATATCG
AGAAGCACCTTTCCAAAACCGAAGGCGTCTACTTCGGCGACAAGATGACT
GTGGCTGACCTCACGGTCGCTCGCAAGATCAAGTATCTCAAAGACGGCAC
TCTGGACGGCGTTCCCACCAACATCGCTGACTCCTACCCTAAGGTCATCG
CTCTCTACGACAGCATTGTCGGAGAGCCGAAGATCGCAGCGTTCATAGCC
AAGCACGCCAAGTAGATGACTGTGGCTGACCTCACGGTCGCTCGCAAGAT
CAAGTATCTCAAAGACGGCACTCTGGACGGCGTTCCCACCAACATCGCTG
ACTCCTACCCTAAGGTCATCGCTCTCTACGACAGCATTGTCGGAGAGCCG
AAGATCGCAGCGTTCATAGCCAAGCACGCCAAGTAG
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