mRNA_S-latissima_F_contig1005.62.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1005.62.1
Unique NamemRNA_S-latissima_F_contig1005.62.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1005.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1005contigS-latissima_F_contig1005:120067..120979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.556376-CDS-S-latissima_F_contig1005:120067..1201131622815364.556376-CDS-S-latissima_F_contig1005:120067..120113Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 120068..120113 -
1693924833.2167163-CDS-S-latissima_F_contig1005:120067..1201131693924833.2167163-CDS-S-latissima_F_contig1005:120067..120113Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 120068..120113 -
1622815364.5661356-CDS-S-latissima_F_contig1005:120737..1209791622815364.5661356-CDS-S-latissima_F_contig1005:120737..120979Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 120738..120979 -
1693924833.2662125-CDS-S-latissima_F_contig1005:120737..1209791693924833.2662125-CDS-S-latissima_F_contig1005:120737..120979Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1005 120738..120979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1005.62.1prot_S-latissima_F_contig1005.62.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1005 120068..120979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1005.62.1

>prot_S-latissima_F_contig1005.62.1 ID=prot_S-latissima_F_contig1005.62.1|Name=mRNA_S-latissima_F_contig1005.62.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=96bp
QEEPLSSCLCNMLTHRSRKGLAIIVVACVVSIASRYLHVADAFCSSILTH
GRTVRNNQLQVVQGLGGRRSTSSCCASAPTRRRQPTGLRPSASQDG
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mRNA from alignment at S-latissima_F_contig1005:120067..120979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1005.62.1 ID=mRNA_S-latissima_F_contig1005.62.1|Name=mRNA_S-latissima_F_contig1005.62.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=913bp|location=Sequence derived from alignment at S-latissima_F_contig1005:120067..120979- (Saccharina latissima SLPER63f female)
CAAGAAGAGCCTCTCAGCTCTTGCCTCTGCAACATGCTGACCCATAGAAG
CCGGAAAGGGCTGGCCATCATTGTGGTGGCTTGCGTGGTGTCGATAGCGT
CGCGATATCTTCACGTCGCGGATGCATTTTGCTCTTCGATTTTGACCCAC
GGCAGGACTGTCAGAAATAACCAACTGCAAGTCGTACAAGGGCTTGGTGG
GAGAAGGTCAACAAGCTCCTGCTGTGCGTCTGCTCCTACTCGGTGAGGAC
TGAGAGCCCCTTGCCACGAGTGCGCCGGTAATGGCACACCAACTCTCGCC
CTCGATGCGTTGGGAAATGAGAACACACGCCTGTACAGTAGTACCTTGCT
TGCGTGCGTATCATACAGCTACGAGTAGCTGCTGCTGACTGTACTACAAC
TGTAAGGTTTCTGCCGCTTACAATGTCCCGCTCAAAAAGCGCTTCCAAAA
TTAATGACACGGGCAACAATTGAAACGAATGAACTGGTTGGTATTAATAG
TGCGATAATGTTATACCAGTATATTTCTTCCCGTGGTGAGTAATACATAC
GTGTACGACTGCTACTGCTGTAGAACGCTTATACTGCTACTCTACTGCTG
CCACAGCTTACTGTAGACACCTACGGCACTTACATACGCGGCGGTACGTA
GTGGCAGCGTAATTGAACTGACCTGCCGGGTACTTACTTAAGTACCGCTG
TGCTACTATGTTATCTCTGTGCTCAGCTATGTTACCCCAGCAGCGACATT
GTTCTTCTACTGCACAGCAGCTGTGGAGAAGTACTAATCACTGACACCCT
CGACCGACCACTGCTCGCTACCTGGTATACTATATGAACATGCATCATGT
AATGGCTTGTAAATAGGAGACGGCAACCGACGGGCTTGCGACCGAGCGCT
TCCCAGGATGGCG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1005:120067..120979-

>mRNA_S-latissima_F_contig1005.62.1 ID=mRNA_S-latissima_F_contig1005.62.1|Name=mRNA_S-latissima_F_contig1005.62.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=576bp|location=Sequence derived from alignment at S-latissima_F_contig1005:120067..120979- (Saccharina latissima SLPER63f female)
CAAGAAGAGCCTCTCAGCTCTTGCCTCTGCAACATGCTGACCCATAGAAG
CCGGAAAGGGCTGGCCATCATTGTGGTGGCTTGCGTGGTGTCGATAGCGT
CGCGATATCTTCACGTCGCGGATGCATTTTGCTCTTCGATTTTGACCCAC
GGCAGGACTGTCAGAAATAACCAACTGCAAGTCGTACAAGGGCTTGGTGG
GAGAAGGTCAACAAGCTCCTGCTGTGCGTCTGCTCCTACTCGCAAGAAGA
GCCTCTCAGCTCTTGCCTCTGCAACATGCTGACCCATAGAAGCCGGAAAG
GGCTGGCCATCATTGTGGTGGCTTGCGTGGTGTCGATAGCGTCGCGATAT
CTTCACGTCGCGGATGCATTTTGCTCTTCGATTTTGACCCACGGCAGGAC
TGTCAGAAATAACCAACTGCAAGTCGTACAAGGGCTTGGTGGGAGAAGGT
CAACAAGCTCCTGCTGTGCGTCTGCTCCTACTCGGAGACGGCAACCGACG
GGCTTGCGACCGAGCGCTTCCCAGGATGGCGAGACGGCAACCGACGGGCT
TGCGACCGAGCGCTTCCCAGGATGGC
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