mRNA_P-littoralis_Contig166.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.9.1
Unique NamemRNA_P-littoralis_Contig166.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.220e-68
Identity = 116/173 (67.05%), Postives = 129/173 (74.57%), Query Frame = 3
Query:    3 QDEPANQRTVFLEGACIPGDSAFAECACMRTPIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTG-AHPAGVGPTSSERAREVAYLSQHFLQREWGVPGSRADRQRRADEMRMRRNNGT 518
            Q +P + R +F  GACI GDSAFAE   MRTPIG    RA+RFFNYKHSSMRFRVEHAFGRLK+KFR+L  GLDC L HC  +V+ACVIL+NFIF  EGESPAD+G D  P  TRNGTG A   G GP  SERAREV YL ++FLQREWG  GSR D+ R  DE R RRNNGT
Sbjct:  161 QAQPVSSRQLFANGACILGDSAFAESPWMRTPIGKPDNRAERFFNYKHSSMRFRVEHAFGRLKKKFRALLNGLDCHLDHCPTIVNACVILHNFIFMCEGESPADHGVDNAP--TRNGTGRALSQGAGPFDSERAREVDYLRRNFLQREWGAAGSRMDQARLQDERRARRNNGT 331          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.500e-13
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    3 QDEPANQRTVFLEGACIPGDSAFAECACMRTPIGACTTRAQRFFNYKHSSMRFRVEHAFG 182
            Q +P ++R +F  GACI GDSAFAE   MRTP    ++R QR+FN+ HSSMR RVEHA G
Sbjct:  188 QSKPVDERRIFANGACILGDSAFAEGPWMRTPYTMPSSREQRYFNFMHSSMRMRVEHALG 247          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A3Q0RQD1_AMPCI (DDE Tnp4 domain-containing protein n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0RQD1_AMPCI)

HSP 1 Score: 60.1 bits (144), Expect = 4.380e-7
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  114 TRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPTSSERAREVAYLSQHF 431
            T  QR+FN +HS  R  VE+AFGRLK ++R LGK LD  +   + ++ AC  L+N    H GE+  + G  V P + R   G   A V PT   R RE   L+Q F
Sbjct:  292 TAEQRYFNERHSRTRMTVEYAFGRLKGRWRCLGKRLDVDVSAVTTVISACCTLHNVCEMH-GEAYEESGVPVPPVE-RWPEGGALADVQPT---RVREA--LTQFF 390          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A672FS63_SALFA (DDE Tnp4 domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672FS63_SALFA)

HSP 1 Score: 59.3 bits (142), Expect = 6.750e-7
Identity = 42/104 (40.38%), Postives = 52/104 (50.00%), Query Frame = 3
Query:  114 TRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPTSSERAREVAYLSQ 425
            T  QR FN +HS  R  VE AFGRLK ++R LGK LD  +     ++ AC  L+N    H GE+  + G  V P   R   GA  A V PT    A    + SQ
Sbjct:  224 TAEQRCFNERHSRARMTVECAFGRLKGRWRCLGKRLDVDISTVPTIISACCTLHNVCEMH-GEAHQESGGAV-PHTERCAEGAASADVQPTRVREALTQLFNSQ 325          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: UPI0019648D8D (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI0019648D8D)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-6
Identity = 49/141 (34.75%), Postives = 67/141 (47.52%), Query Frame = 3
Query:   27 TVFLEGACIP----GDSAFAECACM---RTPIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPTSSERAREVAYLSQH 428
            TV + G  +P    GD A+   + +    T  G  T + QR+FN +HS  R  VE AFGRLK ++R LGK LD  +     ++ AC  L+N   KH GE+  + G  +  D  R   G       PT    A    + SQH
Sbjct:  195 TVEINGVQVPIMLLGDPAYPMRSWLIKGYTDTGNLTVQ-QRYFNKRHSRARVTVECAFGRLKGRWRCLGKRLDVDISTVPTIISACCTLHNVCEKH-GEAYEEPGQAILQDN-RIADGEAQDAAEPTRVREALAEFFYSQH 332          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: UPI000A2A68D6 (putative nuclease HARBI1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A68D6)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-6
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   36 LEGACIP----GDSAFAECACMRTPIG--ACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNF 281
            + G  +P    GDSA+     +  P       TR +  FN+  S  R  VE+AFGRLK +FR LGK LD  L++C ++  AC IL+NF
Sbjct:   97 ISGQAVPPLIIGDSAYGLQDWLMRPFKDHGLLTREETKFNHVLSVTRMVVENAFGRLKGRFRCLGKRLDLCLENCVLVTSACCILHNF 184          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: UPI0014259451 (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259451)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-6
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 3
Query:   27 TVFLEGACIP----GDSAFAECACMRTPIG-ACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNF 281
            T  +EG  +P    GDSA+A    +  P      T AQ+ FN + S  R  VEH+FGRLK ++RS+ K  D +     ++V +C++L+NF
Sbjct:   92 TKTIEGKEVPIVILGDSAYALSTFLMKPYAEGLATAAQKRFNERLSRTRILVEHSFGRLKGRWRSIMKRNDSQADKIHIVVASCIVLHNF 181          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: UPI00106EB0D0 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=1 Tax=Perca flavescens TaxID=8167 RepID=UPI00106EB0D0)

HSP 1 Score: 57.0 bits (136), Expect = 4.260e-6
Identity = 52/144 (36.11%), Postives = 71/144 (49.31%), Query Frame = 3
Query:   27 TVFLEGACIP----GDSAFAECACM---RTPIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPTSSERAREVAYLSQHFLQ 437
            TV + G  +P    GD A+   + +    T  G  T + QR+FN +HS  R  VE AFGRLK ++R LGK LD  +     ++ AC  L+N   KH GE+  + G  +  D  R   G       PT   R RE   L++ FLQ
Sbjct:  189 TVEINGVQVPIMLLGDPAYPMRSWLIKGYTDTGNLTVQ-QRYFNERHSRARVTVECAFGRLKGRWRCLGKRLDVDIATVPTIISACCTLHNVCEKH-GEAYEEPGQAILQDN-RIADGEAQDAAEPT---RVREA--LAEFFLQ 324          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A2A4IXI2_HELVI (DDE Tnp4 domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IXI2_HELVI)

HSP 1 Score: 56.2 bits (134), Expect = 4.270e-6
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3
Query:   24 RTVFLE---GACIPGDSAFAECACMRTPIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYN 278
            RT +++      + GDS +     + TPI   TT A+R +N  H   R  VE  FGR KR+F  L KGL  +L   S ++ AC +L+N
Sbjct:   90 RTKYIQRQHSGYLIGDSGYPCLRFLLTPISTPTTNAERIYNKVHVKTRNVVERTFGRWKRRFPCLSKGLGNKLVTVSNIIVACAVLFN 177          
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Match: A0A6S7GL22_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GL22_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 4.940e-6
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 3
Query:   96 PIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLKHCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPTSSERAREVAYLSQHFLQREWGV 452
            P     T+A+++FN     MRF VEHAFGRLK ++R L K  D  +++      AC +L+N     E E   D+  + D D           G    + E   +V  + +  LQR+WG+
Sbjct:  308 PDDGMLTQAEKYFNRCLCKMRFVVEHAFGRLKGRWRCLLKRNDTTMQYIIQQTAACCVLHNLCEMQEEEFEEDWRVEPDVD-----------GHNINNPEGDEDVRDVLKGMLQRQWGL 415          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JSG7_9PHAE4.220e-6867.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA50_9PHAE9.500e-1358.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A3Q0RQD1_AMPCI4.380e-741.51DDE Tnp4 domain-containing protein n=1 Tax=Amphilo... [more]
A0A672FS63_SALFA6.750e-740.38DDE Tnp4 domain-containing protein n=1 Tax=Salaria... [more]
UPI0019648D8D1.270e-634.75protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]
UPI000A2A68D61.750e-640.91putative nuclease HARBI1 n=1 Tax=Exaiptasia diapha... [more]
UPI00142594513.250e-637.78protein ALP1-like n=1 Tax=Anneissia japonica TaxID... [more]
UPI00106EB0D04.260e-636.11protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN... [more]
A0A2A4IXI2_HELVI4.270e-637.50DDE Tnp4 domain-containing protein n=1 Tax=Helioth... [more]
A0A6S7GL22_PARCT4.940e-631.93DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:65962..66610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7213.XP_004536649.1
PFAMsDDE_Tnp_4
Model size649
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-09
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,38NKY@33154|Opisthokonta,3BK0T@33208|Metazoa,3D11T@33213|Bilateria,422Z3@6656|Arthropoda,3SSXG@50557|Insecta,4562R@7147|Diptera
DescriptionPlant transposon protein
Cds size435
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.7123637-UTR-P-littoralis_Contig166:65961..660891680789801.7123637-UTR-P-littoralis_Contig166:65961..66089Pylaiella littoralis U1_48UTRP-littoralis_Contig166 65962..66089 -
1680789801.7344863-UTR-P-littoralis_Contig166:66524..666101680789801.7344863-UTR-P-littoralis_Contig166:66524..66610Pylaiella littoralis U1_48UTRP-littoralis_Contig166 66525..66610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789801.7259753-CDS-P-littoralis_Contig166:66089..665241680789801.7259753-CDS-P-littoralis_Contig166:66089..66524Pylaiella littoralis U1_48CDSP-littoralis_Contig166 66090..66524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.9.1prot_P-littoralis_Contig166.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 66090..66524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.9.1

>prot_P-littoralis_Contig166.9.1 ID=prot_P-littoralis_Contig166.9.1|Name=mRNA_P-littoralis_Contig166.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MRTPIGACTTRAQRFFNYKHSSMRFRVEHAFGRLKRKFRSLGKGLDCRLK
HCSVMVDACVILYNFIFKHEGESPADYGADVDPDQTRNGTGAHPAGVGPT
SSERAREVAYLSQHFLQREWGVPGSRADRQRRADEMRMRRNNGT*
back to top

mRNA from alignment at P-littoralis_Contig166:65962..66610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.9.1 ID=mRNA_P-littoralis_Contig166.9.1|Name=mRNA_P-littoralis_Contig166.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=649bp|location=Sequence derived from alignment at P-littoralis_Contig166:65962..66610- (Pylaiella littoralis U1_48)
AGCAAGATGAGCCGGCGAATCAGCGCACCGTGTTCCTAGAAGGGGCCTGC ATACCCGGTGATTCCGCTTTCGCCGAATGCGCATGCATGCGCACCCCTAT CGGGGCGTGCACGACGAGAGCACAACGGTTCTTCAACTACAAACACTCGA GCATGCGATTCCGTGTTGAACACGCCTTCGGTAGGCTGAAGAGGAAGTTC CGGTCGCTGGGCAAGGGTCTAGACTGTAGGCTCAAGCACTGCTCGGTTAT GGTCGACGCCTGCGTCATCCTGTACAACTTCATCTTCAAGCATGAAGGCG AGTCACCGGCAGACTACGGCGCGGACGTCGACCCTGACCAGACAAGGAAC GGCACCGGCGCACACCCCGCTGGAGTCGGGCCCACGTCATCAGAGAGGGC TCGTGAGGTCGCGTACCTTAGCCAACACTTCCTGCAGCGAGAATGGGGAG TCCCGGGCTCGCGCGCAGACCGTCAGCGGCGGGCTGACGAGATGCGCATG AGGAGGAACAATGGCACTTAAGCCTGAAAGTGACTGTGGCGTACAACCTG CACGTGTTTTTTTGGTGTGTGTATTAGTGGTAGGATGTGGTGGGGTGGCC TTATGCACCCACCTGTGTTGTGTGTGTTTTTTGTGGGATTGGCGGGGTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig166:65962..66610-

>mRNA_P-littoralis_Contig166.9.1 ID=mRNA_P-littoralis_Contig166.9.1|Name=mRNA_P-littoralis_Contig166.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig166:65962..66610- (Pylaiella littoralis U1_48)
ATGCGCACCCCTATCGGGGCGTGCACGACGAGAGCACAACGGTTCTTCAA
CTACAAACACTCGAGCATGCGATTCCGTGTTGAACACGCCTTCGGTAGGC
TGAAGAGGAAGTTCCGGTCGCTGGGCAAGGGTCTAGACTGTAGGCTCAAG
CACTGCTCGGTTATGGTCGACGCCTGCGTCATCCTGTACAACTTCATCTT
CAAGCATGAAGGCGAGTCACCGGCAGACTACGGCGCGGACGTCGACCCTG
ACCAGACAAGGAACGGCACCGGCGCACACCCCGCTGGAGTCGGGCCCACG
TCATCAGAGAGGGCTCGTGAGGTCGCGTACCTTAGCCAACACTTCCTGCA
GCGAGAATGGGGAGTCCCGGGCTCGCGCGCAGACCGTCAGCGGCGGGCTG
ACGAGATGCGCATGAGGAGGAACAATGGCACTTAA
back to top