mRNA_P-littoralis_Contig1023.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1023.20.1
Unique NamemRNA_P-littoralis_Contig1023.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1023.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1023contigP-littoralis_Contig1023:73431..74001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789362.2819078-CDS-P-littoralis_Contig1023:73430..735111680789362.2819078-CDS-P-littoralis_Contig1023:73430..73511Pylaiella littoralis U1_48CDSP-littoralis_Contig1023 73431..73511 -
1680789362.2908976-CDS-P-littoralis_Contig1023:73917..739921680789362.2908976-CDS-P-littoralis_Contig1023:73917..73992Pylaiella littoralis U1_48CDSP-littoralis_Contig1023 73918..73992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789362.3014336-UTR-P-littoralis_Contig1023:73992..740011680789362.3014336-UTR-P-littoralis_Contig1023:73992..74001Pylaiella littoralis U1_48UTRP-littoralis_Contig1023 73993..74001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1023.20.1prot_P-littoralis_Contig1023.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1023 73431..73992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1023.20.1

>prot_P-littoralis_Contig1023.20.1 ID=prot_P-littoralis_Contig1023.20.1|Name=mRNA_P-littoralis_Contig1023.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MNGPERGTRTTDSLVKFAIPNFLLLNPGACWTKFGTLKTEYTKGTQAQFD
M*
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mRNA from alignment at P-littoralis_Contig1023:73431..74001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1023.20.1 ID=mRNA_P-littoralis_Contig1023.20.1|Name=mRNA_P-littoralis_Contig1023.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=571bp|location=Sequence derived from alignment at P-littoralis_Contig1023:73431..74001- (Pylaiella littoralis U1_48)
GCAAAGCAGATGAACGGGCCAGAGCGGGGGACAAGAACGACGGACTCCCT
CGTCAAGTTCGCGATCCCGAACTTCCTCTTGTTGGTGAAGGAGGTGGCGC
ATGATCTCGATTTGCCCCTACCGTTGGACCTCGACGAGAAGATCAACTAC
ACTACCTTGGGCACAGGTACATAGGATGAAAGGATTGGGGTTGTGGCGAC
AGGGCGTGTGACAGTTTTACCGCGGGAGAGTGTTGTCCGGGCGCCCGAGC
ACCTTCCGCTGATGTTGCTCAGTTCACATAATAGCGCGGTGATGCCACAT
ATCCTATCTATGTGCTACTGCTGTAGAATGAAACATGCGTAAGTTAAACG
TGTCGGACTTGTCCTGAAATTGTGAATCGATCCCACCATGTTGTTTAAAA
AAGTCCTTCGGCGCGTCGATAACCCGTTCCCCTCTACGATTCCTTTCGTC
TATCTGTACACGGGCAAAACCCATACTCACTTTCACCCAGAATCCAGGTG
CATGCTGGACGAAATTTGGGACTCTCAAGACCGAGTACACCAAAGGGACT
CAGGCGCAGTTCGATATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1023:73431..74001-

>mRNA_P-littoralis_Contig1023.20.1 ID=mRNA_P-littoralis_Contig1023.20.1|Name=mRNA_P-littoralis_Contig1023.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig1023:73431..74001- (Pylaiella littoralis U1_48)
ATGAACGGGCCAGAGCGGGGGACAAGAACGACGGACTCCCTCGTCAAGTT
CGCGATCCCGAACTTCCTCTTGTTGAATCCAGGTGCATGCTGGACGAAAT
TTGGGACTCTCAAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGAT
ATGTGA
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