mRNA_P-littoralis_Contig165.77.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.77.2
Unique NamemRNA_P-littoralis_Contig165.77.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig165.77.2 vs. uniprot
Match: D7G5A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.060e-50
Identity = 149/308 (48.38%), Postives = 171/308 (55.52%), Query Frame = 1 
Query:    1 MRSANYPRVSRAVFCSALLLSQHVVVDANNWATGR--SRRSSTLAVMQPGGRDRPIRDWKAIKRESEEKLERKAQEKTGKAEELVEGVEGEAKEVVTERINQVETSDSNLLGLEEGTPQSLGVMLAKVVAITTVGVYGARKVVAFARAFIKARKEA-SEDSAGEGV---VSAVATNDDSXXXXXXXXXXXXXXEVVPPLQAADGGKSEEGDADAEEGEKEDEEVTDGFVTADEEEDASKAASEMLGSVVDAAKDMKKKAKSNLEDLKTGLGDAANRGDGDVDAEEXXXXXXXHLSNGVEGAKVDVSYV 906
            MRS +YPRV RA+FCSALLLSQH VVDANNWATGR  S RSSTLAVMQPGGR+RPIRDWKAIKRE+EEK  RK                             +ET  +  L +EE T + +G+MLAKVV I T GVYG +KVVAFA+AF KARK+  S    G GV   +SAVA   D+    XXXXXXXXXX                                              +ASEML  +  AAKDMKK+AK +LE+LK+GLG+A  RGD DV            L  GV G KVDVSYV
Sbjct:    1 MRSTSYPRVPRALFCSALLLSQHAVVDANNWATGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEK--RKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETVSAEALDMEEDTAEDIGIMLAKVVVIATAGVYGIKKVVAFAKAFTKARKDRKSSGEEGGGVADGLSAVAATKDAKDKDXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXSASEMLAGMGKAAKDMKKRAKDSLENLKSGLGEATGRGDEDVQG-AGEGDSPPSLPKGVAGGKVDVSYV 293
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.77.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A1_ECTSI6.060e-5048.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:329819..335476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1308
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006760.1
Cds size909
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.77.2prot_P-littoralis_Contig165.77.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 329819..335077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789799.4473042-CDS-P-littoralis_Contig165:329818..3300031680789799.4473042-CDS-P-littoralis_Contig165:329818..330003Pylaiella littoralis U1_48CDSP-littoralis_Contig165 329819..330003 +
1680789799.4630682-CDS-P-littoralis_Contig165:330372..3305711680789799.4630682-CDS-P-littoralis_Contig165:330372..330571Pylaiella littoralis U1_48CDSP-littoralis_Contig165 330373..330571 +
1680789799.4813523-CDS-P-littoralis_Contig165:333290..3334701680789799.4813523-CDS-P-littoralis_Contig165:333290..333470Pylaiella littoralis U1_48CDSP-littoralis_Contig165 333291..333470 +
1680789799.492978-CDS-P-littoralis_Contig165:334218..3343051680789799.492978-CDS-P-littoralis_Contig165:334218..334305Pylaiella littoralis U1_48CDSP-littoralis_Contig165 334219..334305 +
1680789799.5090113-CDS-P-littoralis_Contig165:334819..3350771680789799.5090113-CDS-P-littoralis_Contig165:334819..335077Pylaiella littoralis U1_48CDSP-littoralis_Contig165 334820..335077 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789799.523029-UTR-P-littoralis_Contig165:335077..3354761680789799.523029-UTR-P-littoralis_Contig165:335077..335476Pylaiella littoralis U1_48UTRP-littoralis_Contig165 335078..335476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.77.2

>prot_P-littoralis_Contig165.77.2 ID=prot_P-littoralis_Contig165.77.2|Name=mRNA_P-littoralis_Contig165.77.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=303bp
MRSANYPRVSRAVFCSALLLSQHVVVDANNWATGRSRRSSTLAVMQPGGR
DRPIRDWKAIKRESEEKLERKAQEKTGKAEELVEGVEGEAKEVVTERINQ
VETSDSNLLGLEEGTPQSLGVMLAKVVAITTVGVYGARKVVAFARAFIKA
RKEASEDSAGEGVVSAVATNDDSDDEDQEGDEAEEATEVVPPLQAADGGK
SEEGDADAEEGEKEDEEVTDGFVTADEEEDASKAASEMLGSVVDAAKDMK
KKAKSNLEDLKTGLGDAANRGDGDVDAEEGEGDVGAHLSNGVEGAKVDVS
YV*
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mRNA from alignment at P-littoralis_Contig165:329819..335476+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.77.2 ID=mRNA_P-littoralis_Contig165.77.2|Name=mRNA_P-littoralis_Contig165.77.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5658bp|location=Sequence derived from alignment at P-littoralis_Contig165:329819..335476+ (Pylaiella littoralis U1_48)
ATGCGCTCCGCCAACTACCCACGAGTATCACGGGCAGTCTTCTGTTCCGC
CCTGCTTCTGAGTCAACATGTCGTTGTTGACGCCAACAACTGGGCCACCG
GGCGGTCGAGGCGATCATCCACCTTGGCTGTGATGCAACCTGGGGGGAGG
GACAGGCCCATCCGCGACTGGAAGGCCATCAAGAGGTATAAATGCGCTGC
ACAAACAGGACACGTCATCCTCTGGTGGCAGCCACGAGGGTTAGACAAAC
ACAGATAGTGCATATACTGCAGGTCGAAATAGGTGGTTCCTTTCTCTTTC
TTTCTGATATTCATTCATATGGTGAGGGTCTTGATTGACGTTGACATGCG
ATACATGCAGCGACGCGTGTTGTTGGTACAACGCTTCCTACCGGCATCAT
CGCTGTCGGTCTGGTTTGATGAGGGGGTGCCGGTGTCAGGCAGCAGGGCA
CACCACCGCCGGATCAGCCTGGTGAGAGGTTGATGAACCCTGCGGACCCA
GCTGTTGTGAGCGTTTTCCTCTGGGTGTTGTCGTCTCTCGTTCTGCTGGT
GCAGGGAGTCTGAGGAGAAATTGGAGCGTAAGGCACAGGAGAAGACCGGG
AAGGCGGAGGAGTTGGTTGAAGGCGTCGAGGGCGAGGCGAAAGAGGTTGT
GACCGAGAGGATCAACCAGGTGGAGACTTCCGATTCAAACTTGCTTGGTC
TTGAGGAGGGCACGCCACAGTCTCTTGGCGTAATGTTGGCCAAGGTTGTT
GCGGTGAGTTCTGGTGTCTTCACGAGGACACTATTGTGTGAATCATCCCT
GCACTGCGGTTTGTGCATTTGTATGATTTGATACTGCTGTATCGTAACGC
CGGTCAACACCGTCCGTTTCCGGGCATCGGTTCATGACCGCAGCTGTGAC
AGCAACCAATCCACCGCAGTTGCAAGGCTCCCATTACGGCACCCTGTGGT
CGAGCGATCGCATCCATCGTCAGTGTTGTAACACGATCTGGGGATGTCAC
TACGTGGGACACAGCTTCAGTAGGCTATCTTTCTCTGTCTCCAAGATAAT
GTCTTTCCTGCTCACAGGCTGTATTCCTACAGCGGGAGGGAATAGGTATT
AATTCACTGCTGTTTCAATCTAAGTCGCCTCCGGCCCCCCTGTGAGATCC
TGCTTAACCAAGTCCAGCAGAGTGATGTAGTGCGTGACTTTAGATGGCGC
ATTTTGCCCCTCTCCCCCCCCCCCCCCCCCCCTTCAGTCTGTGGCAATAG
CTCCCGTATGCATATTTTCAGGGGGTTCCTCGGTACCGGTTTTTTTACAT
TGGCGACAACTACAGCAGTAATTCACAGTCTTTTTTGGACGGTAATCGGC
CATCTCGGTACATGTACGGGACTCAGCCTCCACGGTATTGCACAGTATTT
TTTCAACGGTAATCGGTCATCACGATACATCTACCGCGGTATTCATCCAC
CACGGTAGTTGTACTGTACGGTATTCTCGGCCACCACTGTACTACCCATA
CGATTTTTTTTTTTAGACCTTTTTTTTTTAGTTCTGCGTGTTGCTCCTGC
GCGTAGTGTAGCAACGGGAGTACTTCGAAGTACTTCGAAGTACAAAATAT
AACAGCAGTTTAAGCAAACACATATCGATCCACCACGCAAAAGTACAGAG
CATTTCATAGGTCTAAGACGACAGCCGTGTTCGCCGTTGTCGCCTGCACT
TGAGCAACTTCCTTTTTTGCTTGCCCTCGGTAGTGGTGTGTTTAGGTCGT
TGGTGGGAATGTTCCGTACGTCCCATTGGCTGACACGAACCATGAACTAT
CCAGCTGGCAGCGGGTAGTGCCCCGTCTGCTGAGCTCGGCGCCTACCGCG
GCTTCTCAGCGAACGCAAGGGAATACGTGCGGGTGAATGCCATTTACAGA
CAGCAGCACAACCGGTTGTTTAAGTCGGCACTGACGTTCAACCGCCTGTC
AACTGCGAGCGGCAGTTGCGTCCTTGGGGGTTTGCATGCTTATCGCATAT
TTGAACGCTGACCAGCTACAAATACCGAACCGATTCCACCGGCCTGTTTG
AACGTTCAAACAACGTGAGTCATTGTTGGCAAAAAGCTAATTGGACTGTC
GAATTTGGGCCTCCAATCCAGGTGTCACAATTTTCGTTAAAAGAGGCCCT
ACATATTCCTGTACGTACATACGATACAAATAAGAAATTCATCTGCAAAC
GCTTTTTGCGGAAACAACGACCTAGCACCTTCCCACAGCAGTACACCGAT
CAAGCTATCCACCTCTCCTAATGTCGAGTCGGCTTGGGTCGTGTTACATC
GGTCGTGGTGCATGAGGAAAAAGGGGTGCTGCGCAGCATGCAGAGTAGGG
AATTGACCAGCGTCTCCACCACAGATGACAAAATAAAAAAAATCAACTCG
TAGCTTTTGAGAAAAATAAAAAACACCCGCCCGAGACGGGCCTCCGTGGG
ATTTTTTTAGTTCTTCACGAAAGGTTCGGTACGTTGGCCGGGAAATAAAT
GCATTTCTTTCCTTGTTTGTTCCAAAACAGAAACATATTCGAGTGCCGTG
GGGTTTGTACGTGTGTGTACGTCATTTATCCAGGGCGCCAGTCTACACGT
GTTCGGTGTGGGCGGGCGCAGCAGCCGGGTCACACGGGCGGGAAGGTCAC
ACGGAAGTTTTTTTTGTTCTTCTCCACCCTTCTTCCAAGGAAAGGGGTGG
TCGAGCCCTTCTCGCGATAACCATCAATAATTAACGACAATATGACGCAG
AAAAGGTCGGGGATATAGAAAGCTCCCGTGTTGATCTCCTTCCTGTCTGC
CGTGACCCTGGCTGGTGCGCCGAACTTATACTGCAAGAAAGGTGTAGACT
GCCGTCCAGAATACATTGATGATAACACACAAAGTCACCCTCCTTCTGTG
GTGGTTGTTCTGGTTTTTATCGCCGCACGGGGGTTCGGTCGTCCCTTCTT
CCTCGTATCATACTGTGAAGTATGGTACTGACAAACGCAGAAAATAAAAA
AAAATTATCAGGGAAACACACGAATGGCAGGATTCCTCACCCCGAAGCCC
CCTCCACTTTGTTCACGGGGTGCTCGCAATATTCCACCTCTGTTTTTCTT
TGTTCGTTGTCGCGTGTCGAGATTTATGTGTGTAATTGTAAGCACGGAGT
GCTTTCAAATCTGGTTCTTCGTAGTGTGGTAGATGACGCGTTAACTTCGT
CACCGGCGGCTGTTACGAACCGTGACACCGTAAGCGTCGGCGGACCCAAA
GTGTTGCACAACACAAGTGGAACAAGAAAATATCATGATGATCCTCTCGG
CGCGTGGTTGTTTCGTTCGTCCTCTCTCGATTGATCGATCGATGCATCCA
TTCATGATCGATTCTCGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTTGTG
TTGTGTCGTGCGCTCACTGCTGCGGCTGCGTGCTGGATGCACCCCATCCG
TCCTCTTGCCGAATACCATCAGATCACTACCGTGGGGGTGTACGGTGCGA
GGAAGGTGGTGGCATTCGCAAGGGCGTTCATCAAGGCCCGCAAAGAAGCC
TCCGAGGACTCGGCTGGCGAGGGCGTGGTGTCGGCTGTGGCCACGAACGA
CGACAGCGACGACGAGGACCAAGAGGGCGATGAGGCCGAGGAGGCGACAG
AGGCGAGGAAAAATCCAGAGTGAAATCCTTGCGTTTGGGAGGCCTTGCTC
TCTCGTGTACCGTACTACGAGGCAATGTCATTGTTGGGCTGGCGGAATGT
TTTGTGGGGTTGTGTATGCATGACTAGTACGAGTACATGTCGTTGTGTCC
ATGGTCGGGTAGGGTTGGTTGTGATGCTTTTAGACAGGACGAAATTAGAC
TTTTACCCTGGAGCGGCTTCCGGGTTTGTTTTGCTGTGCTGGTTGTCCTT
TGTGCGCTGTTGTCATCCAAGGCTTGACCGAATATATCCATCTTTGCCAC
GATCGCTAGAGGCATGGCTCCTTGCTGCCTGCGACTTGAGGTAGAAGGGT
GCAGTTTGCAAGCGAATCGCTCGTGGCAGGAGTAGTAGTAGCGGATGTGC
TGCAGTTGTGCTGCGCCTACCTACGATGGTGTGTTGCCTCCGGGACGTTG
TTTGATGCCGGGCCCATGTGTGCTTCCCACGATTTGCAAGCGACCGTAGC
GATGTTAGATACAGCAGATGTTGTGTTGTCGCAGAGCGTCCGGCTCGCGC
TTGCGAAAAGACGAAACCAAGGAGGCTCCTTGATGATTCGTCGGGGACAG
AAGAATGTTGGAAAAGTTGCCGACAAGAGTTGAACTCATGGCTATGGGAG
GAGCCCTCTCGCTCCAAAGCTAGTGGTTGCTTCGTTTTCGCTGACCTGTC
GTCGACCTTGTTCCTACGCTCCGTATTGTCTTGTTTGTTGTTCCACGCAG
GTTGTGCCTCCCTTGCAGGCGGCGGATGGTGGAAAGAGCGAAGAGGGAGA
CGCTGATGCGGAAGAGGGGGAAAAGGAGGATGAAGAGGTGAATGTCAAGT
GGTTTTCAGTGCGGTGTCGTGTAGATGCCGTTGTGGACGATCGTCTTATC
AGCAGTACTGCTGTGTCGTGAATCTGTCGCTTCAACTTTTTTATTAATTG
TTTCGTCACAAGATCAAAAACAGGAACACCAAGCGAACTTTCCGTTTCAC
AGTTTGGATCATGGAAGCGCGGATTTTCGTAGTCTACGGCTCGTGCTTGG
CGTTCTCGAGGTGTCGTTGAGAGCACTCATTAAGAACTTCGTGAGCAAAC
GTCGATGACTTATCACCACAGTTTTTTGCGCGTCCCTCGTCCCTCCGACG
GTGCGCTATGTCGAAATCTGGCACGTGACCTGTGCCGCTTCACTGCCTCC
AGCTTCAAATGATCGGAACGCCCCCCTCCGAAGCTTGCCCCCACTTCAGC
GCTATCATACATATGGTTTTGGTAAACACACTGCTGTGACTTGCCAGGCT
GAAGAACACTGTTTCCCGCGTCTCCAATCCCCTGTATTCCATTTAGCCCA
GGTAACGGATGGCTTTGTCACAGCGGACGAAGAAGAGGACGCATCGAAAG
CAGCTTCGGAGATGCTAGGAAGTGTGGTCGATGCGGCCAAGGACATGAAA
AAGAAGGCCAAAAGCAACCTTGAAGACTTGAAGACCGGTCTCGGAGACGC
TGCTAATAGAGGAGATGGGGATGTAGATGCAGAGGAGGGGGAAGGCGACG
TGGGTGCACACCTTTCCAATGGCGTTGAAGGCGCAAAAGTTGACGTTTCC
TACGTGTGAAGCCTTGGGAGTAAAAAAATGTTGTCGAGTGTAGGTGAATC
GTCCCCGACATTTCAGGCATTGTGACGTGTTTGGACTACGGTCGTGGTTG
AAATTTGGTTAGATATATGTTATTTTTCATTCATAGACGAGAGGAGCAGC
CGCCGCGAGAATTTGTGGGTTGAACCGCTTAGTAGCTCGGCGGTGATGCG
GCAGCTTTGATATACAGACCTTTTTCGAGCAATCCGTGCGAAATCCCTTT
CCCGTGCGGTGGCCGACCGTCCCATTTGCTGCACAGACTTGCTTGTAGCA
TCGTTGCTGATACTGTTATATTCATCACTCCATAACCGTTTATAACGAGA
CGGAGCAAAGGGAACCAGAAAAAAACAATCTTCCGAGGTTTGAAAAGATT
CTGGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:329819..335476+

>mRNA_P-littoralis_Contig165.77.2 ID=mRNA_P-littoralis_Contig165.77.2|Name=mRNA_P-littoralis_Contig165.77.2|organism=Pylaiella littoralis U1_48|type=CDS|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig165:329819..335476+ (Pylaiella littoralis U1_48)
ATGCGCTCCGCCAACTACCCACGAGTATCACGGGCAGTCTTCTGTTCCGC
CCTGCTTCTGAGTCAACATGTCGTTGTTGACGCCAACAACTGGGCCACCG
GGCGGTCGAGGCGATCATCCACCTTGGCTGTGATGCAACCTGGGGGGAGG
GACAGGCCCATCCGCGACTGGAAGGCCATCAAGAGGGAGTCTGAGGAGAA
ATTGGAGCGTAAGGCACAGGAGAAGACCGGGAAGGCGGAGGAGTTGGTTG
AAGGCGTCGAGGGCGAGGCGAAAGAGGTTGTGACCGAGAGGATCAACCAG
GTGGAGACTTCCGATTCAAACTTGCTTGGTCTTGAGGAGGGCACGCCACA
GTCTCTTGGCGTAATGTTGGCCAAGGTTGTTGCGATCACTACCGTGGGGG
TGTACGGTGCGAGGAAGGTGGTGGCATTCGCAAGGGCGTTCATCAAGGCC
CGCAAAGAAGCCTCCGAGGACTCGGCTGGCGAGGGCGTGGTGTCGGCTGT
GGCCACGAACGACGACAGCGACGACGAGGACCAAGAGGGCGATGAGGCCG
AGGAGGCGACAGAGGTTGTGCCTCCCTTGCAGGCGGCGGATGGTGGAAAG
AGCGAAGAGGGAGACGCTGATGCGGAAGAGGGGGAAAAGGAGGATGAAGA
GGTAACGGATGGCTTTGTCACAGCGGACGAAGAAGAGGACGCATCGAAAG
CAGCTTCGGAGATGCTAGGAAGTGTGGTCGATGCGGCCAAGGACATGAAA
AAGAAGGCCAAAAGCAACCTTGAAGACTTGAAGACCGGTCTCGGAGACGC
TGCTAATAGAGGAGATGGGGATGTAGATGCAGAGGAGGGGGAAGGCGACG
TGGGTGCACACCTTTCCAATGGCGTTGAAGGCGCAAAAGTTGACGTTTCC
TACGTGTGA
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