prot_P-littoralis_Contig165.2.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig165.2.1
Unique Nameprot_P-littoralis_Contig165.2.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length192
Homology
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BLAST of mRNA_P-littoralis_Contig165.2.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.120e-26
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 0 
Query:    2 LPEELVATSKANHITVLDLKHNKLQLLPSELFLCLTQLKVLDVSENRLSYLPETIGSAAGLRKLNLRGNKLRDL 75
            LP +L A+++  HITVLDLKHN LQ+LPSELFLC+TQL+ +D S+NR+SYLPETIG A GLRKLNL+GN LRD+
Sbjct:   37 LPGDLTASNRVTHITVLDLKHNALQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQGNCLRDI 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI5.120e-2670.27Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 82..105
e-value: 1.2
score: 18.1
coord: 36..59
e-value: 0.012
score: 24.8
coord: 14..35
e-value: 32.0
score: 9.1
coord: 106..127
e-value: 54.0
score: 7.2
coord: 128..151
e-value: 33.0
score: 9.0
coord: 60..81
e-value: 37.0
score: 8.6
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 106..124
e-value: 150.0
score: 4.8
coord: 36..55
e-value: 3.5
score: 16.6
coord: 59..78
e-value: 25.0
score: 10.7
coord: 82..101
e-value: 27.0
score: 10.4
NoneNo IPR availablePANTHERPTHR48051FAMILY NOT NAMEDcoord: 3..152
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 14..146
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 13..25
e-value: 1.1
score: 9.5
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 61..118
e-value: 6.7E-12
score: 45.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 107..128
score: 8.997972
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 61..82
score: 7.172906
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 5..168
e-value: 2.5E-38
score: 133.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:15571..19139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.2.1mRNA_P-littoralis_Contig165.2.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig165 15496..19451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig165.2.1 ID=prot_P-littoralis_Contig165.2.1|Name=mRNA_P-littoralis_Contig165.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp
MLPEELVATSKANHITVLDLKHNKLQLLPSELFLCLTQLKVLDVSENRLS
YLPETIGSAAGLRKLNLRGNKLRDLPEGFCRLQALETLNLAQNFLESLPT
AIGGWKNLQWLDLANNRLREFPNEAGLLMELEHVDLSGNPIQRMPLAIER
LQTKGELLRSKARRQMLVRRALHVRGSVREAFVGTCFQDGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf