mRNA_P-littoralis_Contig165.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.2.1
Unique NamemRNA_P-littoralis_Contig165.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig165.2.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.020e-32
Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 VTSDRVEEIIAQGNPILSLARLGIDMLPEELVATSKANHITVLDLKHNKLQLLPSELFLCLTQLKVLDVSENRLSYLPETIGSAAGLRKLNLRGNKLRDL 300
            V S+RV + +A  +  LSLAR+GID LP +L A+++  HITVLDLKHN LQ+LPSELFLC+TQL+ +D S+NR+SYLPETIG A GLRKLNL+GN LRD+
Sbjct:   11 VASNRVADALAAESSRLSLARIGIDALPGDLTASNRVTHITVLDLKHNALQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQGNCLRDI 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI1.020e-3265.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:15496..19451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5C9
Preferred nameLRRC59
PFAMsLRR_8
Model size963
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005789,GO:0009295,GO:0012505,GO:0016020,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0042175,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0098827
Exons5
Evalue8.4e-27
EggNOG OGsCOG4886@1|root,KOG0473@2759|Eukaryota
DescriptionLeucine rich repeat
Cds size576
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.2.1prot_P-littoralis_Contig165.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 15571..19139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.3129776-UTR-P-littoralis_Contig165:15495..155701680789794.3129776-UTR-P-littoralis_Contig165:15495..15570Pylaiella littoralis U1_48UTRP-littoralis_Contig165 15496..15570 +
1680789794.3838868-UTR-P-littoralis_Contig165:19139..194511680789794.3838868-UTR-P-littoralis_Contig165:19139..19451Pylaiella littoralis U1_48UTRP-littoralis_Contig165 19140..19451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789794.3315926-CDS-P-littoralis_Contig165:15570..157081680789794.3315926-CDS-P-littoralis_Contig165:15570..15708Pylaiella littoralis U1_48CDSP-littoralis_Contig165 15571..15708 +
1680789794.343123-CDS-P-littoralis_Contig165:16695..168421680789794.343123-CDS-P-littoralis_Contig165:16695..16842Pylaiella littoralis U1_48CDSP-littoralis_Contig165 16696..16842 +
1680789794.352766-CDS-P-littoralis_Contig165:17088..171751680789794.352766-CDS-P-littoralis_Contig165:17088..17175Pylaiella littoralis U1_48CDSP-littoralis_Contig165 17089..17175 +
1680789794.3608341-CDS-P-littoralis_Contig165:18579..186691680789794.3608341-CDS-P-littoralis_Contig165:18579..18669Pylaiella littoralis U1_48CDSP-littoralis_Contig165 18580..18669 +
1680789794.3732793-CDS-P-littoralis_Contig165:19025..191391680789794.3732793-CDS-P-littoralis_Contig165:19025..19139Pylaiella littoralis U1_48CDSP-littoralis_Contig165 19026..19139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.2.1

>prot_P-littoralis_Contig165.2.1 ID=prot_P-littoralis_Contig165.2.1|Name=mRNA_P-littoralis_Contig165.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp
MLPEELVATSKANHITVLDLKHNKLQLLPSELFLCLTQLKVLDVSENRLS
YLPETIGSAAGLRKLNLRGNKLRDLPEGFCRLQALETLNLAQNFLESLPT
AIGGWKNLQWLDLANNRLREFPNEAGLLMELEHVDLSGNPIQRMPLAIER
LQTKGELLRSKARRQMLVRRALHVRGSVREAFVGTCFQDGT*
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mRNA from alignment at P-littoralis_Contig165:15496..19451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.2.1 ID=mRNA_P-littoralis_Contig165.2.1|Name=mRNA_P-littoralis_Contig165.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3956bp|location=Sequence derived from alignment at P-littoralis_Contig165:15496..19451+ (Pylaiella littoralis U1_48)
GTGACATCCGATCGGGTGGAAGAAATTATCGCTCAAGGGAACCCAATACT
CTCCTTGGCGAGACTTGGGATCGATATGCTACCTGAAGAACTTGTCGCCA
CAAGCAAAGCCAACCATATCACCGTGCTAGATTTAAAGCACAACAAGCTG
CAGCTTTTGCCGAGTGAGCTGTTTCTGTGCTTGACACAGCTCAAGGTTTT
GGACGTCAGCGAGGTGAGTGAAGCACAGACGCGTGTACCGAGATCACATG
CGTGCGTGCGCACCGAAATTTGCGCCTTTTGTTTCTAGACGCAAAACAAA
AAAACACTGCACGAAGCGCCCGGCCTTGGATCTATCACACCAACCTGCTG
GGGCATCGGCAAGTGCTGGTTCCAAATTCAGCACACGTTTTTGAGTAGAA
CATTCTTTGCGCGCCCTCGGAGTTTTGGCTGATTTGGGCTATTCTACGAG
TGAGTGCGCAAAGCTGGAGTGTGAAATTAATTTTGGGGCACAAACTCTGA
CATTTAAACGATGTATTGAAGGGAGACACAAAATTGTTCTCCGCTTAAAC
TTAATCTTCGCCGGGGTCCATCTTTAGCGCTGCACATCGTATCGATCCTA
TTTTTCCCACCAATGTTTCGGTTCTCTGGTCATACAACTCTGCTGTAGCC
GAGGTGCAGCTGATGTAGGCTGTTCTATCGATGCGCAACCCTTGGGGCAT
GAAGTTTGCCGCCAAAGAGTAAAAAATGAGCTCTGGAGGCACAGAAAAAC
GGTTTGCTTTCAGTTGCGATGGCGCAGCATTCCTTCACCAGAGTTTAAAG
CAAACCTATGGCAAACAAAACTATTTGAAGTGCTGGCGGAGGTTAACTTT
AACCCTCTTGAGGCCAGGCCGCGGTAAAAGCGGGGCACACCAGCGGTGAC
GGAGGTCATAGCTCCGAATGGTCATGACTCCGTATGGTAATGGCTGCGCA
AGCTGGGCAAATTTGGAAGGGGCTCCGAAGTTCACCATCACAAGTGAAAC
GGTGCCCTACCCACGCCTGTGACGTGTCCCAATTTTTCAAAGTTCATACG
AGTTCAACAACACCAACCGCTGTCGTTTGCTTCGTGAGAGTCACCACTGC
GCTGGGTCCCCTCTCCGGGTCTAGAAACAAATGAAAGGCCGGATCCATCC
AGGACGCTTTCCACTTGCGCTCTCTGCCCGACCTCCCTTTTCAAGCACAG
AACCGTCTCTCCTACCTTCCGGAAACAATCGGATCAGCTGCTGGACTTCG
AAAGTTGAACCTACGAGGGAACAAATTACGGGATCTCCCGGAAGGGTTTT
GTCGCCTTCAGGCCCTCGAGACGTTGAATCTCGCGCAAAACTTCCTGGTA
AATTGCCATACCAGTGCGGACAACATGATTCTTGTGCAATTCCTTCGAGT
GCTTGTTGGGAGAGTCAGGAATATTGTGCAGTAACCTTTTCTGTCATTCC
GACAAACAAATCAATACTGCTGTGTTGAAGACTACCCAAAAGCCTTCCAT
TCTGTCTGTGGGAGCGCTCATCGACCAAAAAGGACCAACATGGCCTATCG
TAATATTTTTGTTCATCTTCACATACATGCGTTTTGATACCAGGAAAGTC
TCCCGACAGCGATCGGCGGATGGAAAAATCTGCAGTGGCTGGATCTGGCC
AACAATCGCCTTAGAGAATTTCCGAATGAGGTGAGCCACAGATGATCCCC
TGAACTACACATGTGTCTGCGTCCGTCGCCGATACAGCACGCGTTGACCT
CTTTGCCCATCGATGTGGGTAGAGCGTCAAAACCTTGTGTGGTTGCACAG
AAAAATTACAGTCAACGTGTGGCTGCGGGAGAAGACTTAGCATCCACGTC
TCGAAACAGACGCTTTTCCATACCAGGTATATGATACTAGGTCGAAACCA
TGGCAGGTCCAGCGGGACTTTGAGCCTAGACCAAACCTTCGGCTCAGAAG
AAATCAGCTTTCTAGGTTTCTCGGCCGGACGTTCGTTTCCTATGGGCTTG
GCCTGTGCTTGAATGTTGGCGACGAAGTCTCGCGCATGGTATCAGACTTC
AAAAACTATCTTGACGCCGGAGTCGAAATTTGATATTGGGAGTTCGAAAT
CGGGGCCACCTACCAAAAAGTTGCCGTTCCCAATTTCATGCGCGGCAGGG
ACAATCTGCCATCTAAAGTGTTCGCCGCTGACCCAAGAACTCAAAGAAAT
TAAAAACTTCCACCGAGAAACTCAGAACGTCAAATGAAGCGCATGCTGCA
AAGGATTTAGTGGGCACGATTGGTGCCCGAGCGACCGAGCGCTGGTTGGT
GCTGTGACGTGTTGTATTTGAGAATAAAAAGTAACAAGTGGGCTGTTTTC
GCCCGAGCGAGAGGTTCGACCTGAGCCCAAGTATGGTGCGGATATTTTCC
AGCTGATGTAGGTCTGAAATGCTGTCGACGTAAATAATACCATCAACTCA
GAGAAGTTCTAACTCAACCTGAAAAAGAGGTGATGGGCTCTCGCTGGGAT
TTGAACGAGCATGATACGTACACCTCGTGGTGGACAAGACTCCTTTTGAC
GCTGGCGAGGCAGCCACACAAAATATGAACTACGGCATCTCGCAAGTATC
ATTGTTTTCGCCTACTGCAAGTCGTGCATACTGAAATTAGCGCTGCCTGC
TTTGTCTTCTGGTGGATGGGTCCTTATCGATTAAATATAAAACTCCTGGC
TCTTGGCCGCCCATGTACGGTCAGTGATCTCCGGGGGCGAACCTCTCACC
AGTCGCTAATGTGTCTGCGATGGAGCCTTAAGCCCGGTTCAGAGTTTTTT
TCCCTTTTTTTTTCCTCGAAACCCCTTTTTCCCTTTTCTTTTAAACCCCT
TTTTCCTCACCCTACCGTAGGGTGAGGAAAAAGGGTTTCGGCGAAAAAAT
AATGGGAAAAAGGGGTTTCGAGGAAAAAAATAGCTGTGAAAAAAAAGCAA
AAAGTGCCGTACATGGGAATCGAACCCGCCGCTACGCATTTTATTCGATA
ATGAGTATCGCCCCGCGGTCTCGTCCTCATTGATCACGATTTTCCATGCG
GCAAATACTCAATGATCTTTCGGCGAGCTTGTAGGCGGGCTTGCTTATGG
AGTTGGAGCACGTGGATCTCAGTGGGAACCCGATTCAACGAATGCCGCTG
GCTATCGAGCGCCTGCAGACGAAGGTGGAATCGATGCCATGAAAGTAATG
AACTGCATTGGACAGCCTAGACGCTGACAAGAAACACGTTTTTTCCCTAG
CTGTAACACGCACCTAGGAGAGCGCATCGCATCACCTAGAGTTTCCTTGC
TTACTACGGTGCAGCTACTTCTGTAGCGACGGCTGCTTTGCTCTACGCGT
ACGGAACTGTGGGATTCAAAACGAAATCGTTCACTCAATCCGGATCATCA
ACTTTCACATATTGATTATGTGTTGGTCTACTCGGTCGAGGCAAAACGTG
GAAATGTGCAACATCACACAACCTCGCGAAGTTACCCAAAAAAACAAACC
CAACGCTTATTGCCCTCTGACGCCTTGCAGGGTGAACTTCTTCGGTCAAA
GGCTAGGAGGCAGATGCTGGTACGGAGAGCGCTTCACGTCCGCGGCTCTG
TTCGAGAGGCCTTCGTGGGCACGTGCTTCCAAGACGGCACCTAGGCGTCC
CAGACCTCGGCAGACAGTCACCAACATACGACCACAGTCTGATTCGTATC
GTAGGAGGCTTATGAAAACTGCATTTCGTGAGCAAGTGGGGCAAGGTCAA
CCTGGTGCCCCTGGAGATACCAAGAGCATGTACACGGGCGGGTTGAGTAG
TGCCTAGTGCGAGCGCGGCCGGCGTTTCGAAAATATTTTCGGTTCATTTC
ATCCACGCACGACATAGCATGACTGCTGTTTCAACAAGAGGTCTGAGGAA
CTTGTTCGTACTATGTGAGGTATGGTTCGTTGGCGACACCTCGGGCTCAT
GACCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig165:15496..19451+

>mRNA_P-littoralis_Contig165.2.1 ID=mRNA_P-littoralis_Contig165.2.1|Name=mRNA_P-littoralis_Contig165.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig165:15496..19451+ (Pylaiella littoralis U1_48)
ATGCTACCTGAAGAACTTGTCGCCACAAGCAAAGCCAACCATATCACCGT
GCTAGATTTAAAGCACAACAAGCTGCAGCTTTTGCCGAGTGAGCTGTTTC
TGTGCTTGACACAGCTCAAGGTTTTGGACGTCAGCGAGAACCGTCTCTCC
TACCTTCCGGAAACAATCGGATCAGCTGCTGGACTTCGAAAGTTGAACCT
ACGAGGGAACAAATTACGGGATCTCCCGGAAGGGTTTTGTCGCCTTCAGG
CCCTCGAGACGTTGAATCTCGCGCAAAACTTCCTGGAAAGTCTCCCGACA
GCGATCGGCGGATGGAAAAATCTGCAGTGGCTGGATCTGGCCAACAATCG
CCTTAGAGAATTTCCGAATGAGGCGGGCTTGCTTATGGAGTTGGAGCACG
TGGATCTCAGTGGGAACCCGATTCAACGAATGCCGCTGGCTATCGAGCGC
CTGCAGACGAAGGGTGAACTTCTTCGGTCAAAGGCTAGGAGGCAGATGCT
GGTACGGAGAGCGCTTCACGTCCGCGGCTCTGTTCGAGAGGCCTTCGTGG
GCACGTGCTTCCAAGACGGCACCTAG
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