mRNA_P-littoralis_Contig164.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig164.92.1
Unique NamemRNA_P-littoralis_Contig164.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig164.92.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-7
Identity = 28/92 (30.43%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  112 SGSSRIEIRQKTDVRPWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKI 387
            S ++ + + +   + PW G + +GE  +    +F  ++ A    EG+   + S   IPVG+E I+M+ LR  +  D+V K++  WNMLI  +
Sbjct:   99 SSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig164.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW6_9PHAE1.090e-730.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig164contigP-littoralis_Contig164:445476..445926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size451
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789793.8124702-CDS-P-littoralis_Contig164:445476..4459261680789793.8124702-CDS-P-littoralis_Contig164:445476..445926Pylaiella littoralis U1_48CDSP-littoralis_Contig164 445477..445926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig164.92.1prot_P-littoralis_Contig164.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig164 445477..445926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig164.92.1

>prot_P-littoralis_Contig164.92.1 ID=prot_P-littoralis_Contig164.92.1|Name=mRNA_P-littoralis_Contig164.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
ALSLSPGDLAGIASIVDQVMRNAPAQAAAQDRGQPHQSGSSRIEIRQKTD
VRPWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVEN
INMQQLRLDYGSDNVTKSLKVWNMLIQKICCQPIQQQVLACRTPQQAWRV
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mRNA from alignment at P-littoralis_Contig164:445476..445926-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig164.92.1 ID=mRNA_P-littoralis_Contig164.92.1|Name=mRNA_P-littoralis_Contig164.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=451bp|location=Sequence derived from alignment at P-littoralis_Contig164:445476..445926- (Pylaiella littoralis U1_48)
GCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGA
CCAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCGAGGGC
AGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAACTGAT
GTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGC
CCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGC
TTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAGAAC
ATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAA
ATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGCCTA
TCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTG
T
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Coding sequence (CDS) from alignment at P-littoralis_Contig164:445476..445926-

>mRNA_P-littoralis_Contig164.92.1 ID=mRNA_P-littoralis_Contig164.92.1|Name=mRNA_P-littoralis_Contig164.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig164:445476..445926- (Pylaiella littoralis U1_48)
GCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGA
CCAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCGAGGGC
AGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAACTGAT
GTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGC
CCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGC
TTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAGAAC
ATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAA
ATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGCCTA
TCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTG
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