mRNA_P-littoralis_Contig163.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.56.1
Unique NamemRNA_P-littoralis_Contig163.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:417093..420847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.0099084-UTR-P-littoralis_Contig163:417092..4171551680789785.0099084-UTR-P-littoralis_Contig163:417092..417155Pylaiella littoralis U1_48UTRP-littoralis_Contig163 417093..417155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789785.0251756-CDS-P-littoralis_Contig163:417155..4173171680789785.0251756-CDS-P-littoralis_Contig163:417155..417317Pylaiella littoralis U1_48CDSP-littoralis_Contig163 417156..417317 +
1680789785.0377815-CDS-P-littoralis_Contig163:420808..4208471680789785.0377815-CDS-P-littoralis_Contig163:420808..420847Pylaiella littoralis U1_48CDSP-littoralis_Contig163 420809..420847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.56.1prot_P-littoralis_Contig163.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 417156..420847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.56.1

>prot_P-littoralis_Contig163.56.1 ID=prot_P-littoralis_Contig163.56.1|Name=mRNA_P-littoralis_Contig163.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MKRWLIRMKCSNQGVYQVPVIRRGRYHKNEELTEHTGCMYLCSSSSSGKL
RQKESSKPLHPEDTRPR
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mRNA from alignment at P-littoralis_Contig163:417093..420847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.56.1 ID=mRNA_P-littoralis_Contig163.56.1|Name=mRNA_P-littoralis_Contig163.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3755bp|location=Sequence derived from alignment at P-littoralis_Contig163:417093..420847+ (Pylaiella littoralis U1_48)
GTTAACTGTGAATCTGCAGCCCTGGTCCAGCTCCTTTGATAGGGGGAGTA
AGAGCAAGTTCAGATGAAACGATGGTTAATACGTATGAAGTGCAGTAACC
AGGGAGTGTACCAGGTACCTGTCATTCGGCGTGGCAGGTACCACAAGAAC
GAAGAACTCACTGAACACACGGGATGTATGTATCTCTGCAGCAGCAGCAG
CAGCGGCAAGTTGAGGCAGAAGGAGGTAGGTGGTGGTGCAGGAGCCATCA
TTCGGGTGGCAGGCATCGAGAAGGCGGAATTCTTTGCTGAACGCGCAAAG
GACGGAATGGTGGATGTAGGCAAGAAAAGATGTGGCCGCGTGGTCTCGTA
AAGGGTGCATCAACGCGACCATCATTCGGCGTTACAGGTATCAAGAACGT
CGTGACGCGTGACCACAAAAAAGTTTTAGATAGATAGACAGATGATGGTG
AACGTCGGCAGAGAAAGAAAGGTGTGGCCACATGGCCACAAAGCATGTAT
GTAGACTTAACCGCATTAGGCGTGGCGGGGACCAAGAAGACGGAACTATG
TGCTGAACACGAAGGGCTGAATGGTGGGTACTGGCATATATCTGCAGCAA
GAGGTGTGACAACATAGACAGGGTGTGCCAAGCAGCCGTAATTCGGCGTC
TCACCCACCATGATAATACCATGGTGGCGGAGAACTCCCCAAAACATGCG
AAGGCGTGATACATCTACGGGTAGCCAAGTCGCGGTCCAGCGAGCAGAAA
ATGGGGGAGAGCTGGCATGGATGTGGGGCATGGATGTGGGGCATGGATGT
GGGGGCTGATCGGTATGCAGCGGCACCGCTTGCCGTGTTCGTGCTCGCAG
ACAGCGGAAAGGCGGGATTGCTCCTTTCACCCCGGCAGGAAAACATCCAT
TCTTTTAGGCTAGACAGACGAGGAGGAGGGCCAACGAGCGACCCCCCAGA
TAGCTGTTGTCCGTACGCGTTGTTTTACCCCAACCCTAACCCTTAATGAA
GGCTACCCTTCGTAGAAGAGGAATACAGCGACGAGTGAAAGGAGGAAACC
CCAAAGGTGTCATCCAAGAAGCAAGGGCATACCGCACACTGTGAACGTTG
TCTGTTGCGGGAGCCATCGCGTATCGTCACGTTCATATTTCGTCAAAGTC
TCCTGGGGCTGGTCGCGCTGTAGCGGGAGTCCATTCCATCCCGCGAAGGG
TGTCTCCCGCCATCGGGGAGTGCTCCACGCGTGCGGCGCTCGGGGGACAC
CTCGCCCTCCTTGGGCTTTCCTCCCCTCGTCGCTGTATCCCTCTTCCTCC
TCCTCGGTATCGGCTGCAACCCACCCGTGCCATCTTGGGTGTCCGGTGAG
GGTTTGGCTAATTCCACGGAATAATCCAGAGAAGAAGCAATTTAGCTACG
ACTGGCCTAGCTGCCGGGGTCCTGGCGGCTGGGGTGCTTTCGGTCGGCGC
CCGCGCTTCTACGCCTCTTGAGTCACCGCCAGTTCCTTCGCCAGCCTGGT
TTTCGGGATCTGCGCCTGCTTGAGCCTGGCCGCTTTCTTTTGGGCAGACG
GCGTGAATCTTACAGTACGAGTAGCATCTCTTCGTCATTTCCGTAGGCGC
AGCCGCAGAGGGTCCCGATGGAGTGGTCGTAGTGACCAATGACAAGGGGC
ACGCGATATTTCTTCCGTAGTTTTAGCAAGAAGAGTCTACAAAATCAAGT
GGTTAAGGGGAGACTCAAGAGTCGACCAACTGCCCACCGAAAACAGGAGA
CAGACATACATTGGACTATCAGGAGATCAACGGATCTGGACGTGCGTACA
ATATTCATGATATCTACAGCCGTCATCCACCTTCGACATTGAGTAAAGAA
GGAAAAACACACACAATTTGTGGGATGTTGTGTCGCACACTCTTGTACAG
TATTTGCAAGTAACAAACCGGTGCTACGAGGGCGCCTCTTGCGGTTATTT
TTTGTTTGATTGGCGAGGCGGGAATGGCATCAATTCTCTCCAGGGTCTAA
AAAACGAGTTGTGCGGCGCCTCCTCTATGAAACTATTCCCACGTTGATAC
CGCCACAACAGTCCACGTGACGAGAAACACGAGCACCCTCCTCCAACCTC
TTTTCGACCGATAATTTACAAAGAAAATTCACCACGTAAAATCTGTCGAC
ATGACTTCGAAACGGAAGGCATGAAAAGGAGCCCTCCTCCGAACGATCGC
AAAAAGGTGCTATTTGCTCCGAAATGAACGGTAAGGACCCCTGAAAACAG
CAAGAAGATCCCGCCAACCATAATTACACAGCTCGGTCCTATCACGGCCC
GCCAACGAGGGTCGCATTCGTGCCCCTCAACAGGTCAATAAACCATCCGG
CCTCCCTAACGCTTTCCAAATCTACGTCATCCTCAACCTCCCTGAGCGAC
CACCTCGCGGCGTCCCTTTTGCTAGAAGACACACCTCCCGACGACGCAGC
AGCTGCGATTGTGAGAGTAAGGGTGAGCCGTCGGCAGAATTCGCTCAGGG
CACGGAAGCAAGAGGTGTGGTCCCCGGAGAGTGCGAAAGCGCAAGCTGCG
TTGTACGGCAAATCCGTGTCGGAGGTATCAATAGCACACGCGCTGGAGAG
GAGATTTCCGGCGTCCTGGTGACAGGGTACGGGCAAGAGAGGATTCGATA
CGTTGGCAAAAACTCTGTCGATTCGGCGTACTGAGCAGGGGATGAGCTGC
TGGGTGCTGTGCCAAGGATAAACCGTACTGGCATCGGAAGGGTCGGGCTC
TTTGCGGCCAGAAACGTGCGGGGCATATCCCATCCCGCGCCAGTCCTACA
AGCTGCTCTCTAGACCGAATACAAAGAAAAAATGATGCTCTGTATTCATC
GATCGGGCTTGCAGTCGCGCAATATCCTTCCATTCGTATATACAATATGT
GATTATTCACGCTCAATACGAGACATGTACCAACCTGTAGCCACGTGACC
GCCGACATCCGCAATCTCTCGACGTGTGGTGCTGGCGCAACAGTAGAACC
GTAGCCGCCTTGAGCAGGCCACGCGACCTCCCTGTAGACAGCCATCGTCC
GTCTTCACCGGGGTTTGACGCATACAGGCAATAAAAGGTGTTGTCGACAA
TGATGAAGGGCGGAGCGTAGCGCTAGTAAACCGCCAGTTGTAAGCTCTAA
ACCTTGTACTGCCTACTGGAACAGTATAATATATTTCGATGTTGGTCCGT
TCACCTTGTTGGTATCAGTCTGTGTTCTTGGGTAGCCGGTTATCACGGCA
GTCGTCTCTCACCGACGTGTTGCAACGTTTCATAATATGATGCATCACTT
TCACCAACAACTCGGAGGCCCGCATGAAAGGGTATGACGCTTATGGGTTC
AAATCAGGCAACCAAGGTCTTGCAAAGTCAAGTCCACATGGCTGCGAGGA
CTGCTCTTACTAACAGGGGGTAGTTTACACCAGCCCGTGAGCGTTGCGAA
ATCGCCAAACTTGATGCAAAACAAGCTCACCCTAACCAAAACACCAGCGG
TGAGCGCCTCCGCTCTCGAGCTCTCTCTTGCTGCGGCAAGCACTAGCATT
TGAAACGAAAGGCAGTTCAACGGTGTCATACCAGGGTAAACTCGCGGAAG
GCGACGATGAAAAGTCTTCCGCCACAAAATCGTGCAACTCTGCGTCTTGG
AGTGCTATCTCTCCTTTCGGAATTCTCAATATCACCTGCCGTGTTCCAAT
AACCCTTCCCCCGCAGTCGTCAAAGCCTCTGCATCCTGAGGATACCCGCC
CACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:417093..420847+

>mRNA_P-littoralis_Contig163.56.1 ID=mRNA_P-littoralis_Contig163.56.1|Name=mRNA_P-littoralis_Contig163.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig163:417093..420847+ (Pylaiella littoralis U1_48)
ATGAAACGATGGTTAATACGTATGAAGTGCAGTAACCAGGGAGTGTACCA
GGTACCTGTCATTCGGCGTGGCAGGTACCACAAGAACGAAGAACTCACTG
AACACACGGGATGTATGTATCTCTGCAGCAGCAGCAGCAGCGGCAAGTTG
AGGCAGAAGGAGTCGTCAAAGCCTCTGCATCCTGAGGATACCCGCCCACG
G
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