mRNA_P-littoralis_Contig1621.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1621.2.1
Unique NamemRNA_P-littoralis_Contig1621.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1621.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1621contigP-littoralis_Contig1621:914..2259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.5746524-UTR-P-littoralis_Contig1621:913..10211680789784.5746524-UTR-P-littoralis_Contig1621:913..1021Pylaiella littoralis U1_48UTRP-littoralis_Contig1621 914..1021 +
1680789784.6093404-UTR-P-littoralis_Contig1621:2139..22591680789784.6093404-UTR-P-littoralis_Contig1621:2139..2259Pylaiella littoralis U1_48UTRP-littoralis_Contig1621 2140..2259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.5855963-CDS-P-littoralis_Contig1621:1021..11721680789784.5855963-CDS-P-littoralis_Contig1621:1021..1172Pylaiella littoralis U1_48CDSP-littoralis_Contig1621 1022..1172 +
1680789784.6000788-CDS-P-littoralis_Contig1621:1897..21391680789784.6000788-CDS-P-littoralis_Contig1621:1897..2139Pylaiella littoralis U1_48CDSP-littoralis_Contig1621 1898..2139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1621.2.1prot_P-littoralis_Contig1621.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1621 1022..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1621.2.1

>prot_P-littoralis_Contig1621.2.1 ID=prot_P-littoralis_Contig1621.2.1|Name=mRNA_P-littoralis_Contig1621.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MLAPRCCPLPSRSHATKDATTATPTSDLPAVRATISTSETLCQGRVLFFH
GRGEESEEDNYCMSMQDSDDEEETDEAAVQYMRGAFEDVPVRMAVHIVAC
PHISDIMQPMFPFGVTSHSQTGTSCFTCVS*
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mRNA from alignment at P-littoralis_Contig1621:914..2259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1621.2.1 ID=mRNA_P-littoralis_Contig1621.2.1|Name=mRNA_P-littoralis_Contig1621.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1346bp|location=Sequence derived from alignment at P-littoralis_Contig1621:914..2259+ (Pylaiella littoralis U1_48)
CAGCAGAACAGCGCCCCTTCTAAAAACAGTATTGGGCAGCGGGGTGTCGC
CAAGCGATGTGCAACCTGGGTTTCGTAGTACTTTTTCGCGTTCTAGGATG
TCGGGGACATGTTGGCCCCCCGCTGCTGCCCACTTCCATCACGCTCGCAC
GCGACCAAGGACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGT
ACGCGCTACCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTTTGT
TTTTTCACGGTGAGTCTTGTTGTCATGACCGTCCTCAGGGCAGCACCCCG
GGGTAGTTCCCTACCGAATTCCGACTACCCTCGACGTCGCAGGCACTAGC
GTCTCGCCCACCAAGGAGGTTAGTCTCATACACCCGGTGCCGTCAGTACA
TGTCTCAGGCTCTCTTGGATAGAAGTCCGTTTGGAAATCGGACTTGTGTA
GGCAGACTTCTCTCCAAAATGCGGACAAGAATCTCACCGTGTCGAGAGGA
CCCTGAGCGTTCGCCAGAAGCAGGTTGAAAAACAATCGATAACGAAGTAC
TGCTGTAGAGGAGAAAAATCAACGCATGGCGTGGAATCAACCCTCCACCA
CCACCGCCCACCGCGCGCTACGCGAGAGAACGCCTAGTTTCTGCGGGTGA
ACAGAACAAACTTAGGGTTGCAGAAGAATTCTCGGCTTCAGCTTTGGTGC
TGTGTTGTGTATCGGAGACAACTATTTTTTGTAGTAAAACCGGACTCAAC
AGCGCAAGAAGCAGCCTGTGTCAGCAAGTATGTTGAAGCCTGGGAGGTTA
GAGTCGAATGAGTACGGGTGACAAAAAAACGGCGTGTTCTTTTTTCCTTC
TTGCGTTATCTATGAACCATCGCTTTTCTCTCTTTGCTTTCTCCCACGTC
CCCCCGCAAACCTGAACTCGCCTGACGAGTGTCTTTGAGTCTCACGCTCT
CCTCGTTGCGCTTGCGAATTCTGATTGGAGCAAGGTCGAGGAGAGGAGTC
TGAAGAAGATAACTATTGCATGAGCATGCAGGATTCGGACGATGAGGAAG
AGACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTT
CCGGTGAGAATGGCAGTGCATATTGTTGCCTGCCCGCACATTTCAGACAT
CATGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGCA
CGAGTTGTTTCACTTGTGTTTCATAACCATCGCAACGAGAGCCTGTTTGG
GATGATATTTTTAATCGCTTTTATCTTTTGTTTGTCCGCGGCCGTGTGGT
TGACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1621:914..2259+

>mRNA_P-littoralis_Contig1621.2.1 ID=mRNA_P-littoralis_Contig1621.2.1|Name=mRNA_P-littoralis_Contig1621.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1621:914..2259+ (Pylaiella littoralis U1_48)
ATGTTGGCCCCCCGCTGCTGCCCACTTCCATCACGCTCGCACGCGACCAA
GGACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGTACGCGCTA
CCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCAC
GGTCGAGGAGAGGAGTCTGAAGAAGATAACTATTGCATGAGCATGCAGGA
TTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCGTG
GTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCCTGC
CCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGACCTC
GCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAA
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