mRNA_P-littoralis_Contig162.13.63 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig162.13.63 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI) HSP 1 Score: 758 bits (1957), Expect = 1.860e-228 Identity = 718/1321 (54.35%), Postives = 788/1321 (59.65%), Query Frame = 1
Query: 1792 PVPRAPVLGCAGAWIGARVRADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRTPRYPLPRKRRFR-AGVGFPGEDEEGDDGALSPPASGVDGVGVGWAGAXXXASGASVKVEGGGTVAGSMGGRXXXXXXXXXXXXXXXXXAGVTVGXXXXXXXXXXXXEGSAMAGHV---------------------FFANGGGRDAEASRGGRRAPTMLPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKNKAFKDVRSRLRLVLEHKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLARHLLRGVANRMALARRELCEGRPEARDGRVADAGKAICRHISLLTVSPPRSTTLGGGATPGLKREGGAPV----PPAADAAASGAGAAGXXXXXXXXXXGSPSSEAASERQGKGE---LTMPELSRIGFEVEQSMTKAKAGLQAALSGDAAKASPVKMEGVDVGGGINSNGAAAGDAGFGHRFSARDLSRAPEGSWGLAVRLLPHQAQALAWIRDLAGRGLGGVLCDEPGTGKTVVAAASVALVASCRAAVEEEAV-------KKGLESSLSPAHNLCVSFPETKAAHGASFAAGGAASKVDTATPGISVADAKDGASLPSKASPGKGAGVRATRPRPGRLSPPPQLVVMPSWAMARWHMELAQACPRLVIKVWEEWRHQERHGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KAPVPRT-RCSSADVVLCSLERLMEVSSGGDSADVRLARSVRWTQEFVIRCAMTEPQKEVYAAVARSPEIMAALSGG--TAPDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRVKGDIAEEALLALRRAALTGALDKTPPPGSSASAGEVEAQKEEFWRGHAKDLELSVPERLEKYSGKLARLGRAVERLTSAGKKVLILGALPDALELVHQYLTETDVPHECWAASGEIFPSSAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AATSHSPAMAAL------------LGAHHRSLGSFPSRASSPRVPPVPPKPAHERLWSGVQAPLWRFRGSSRTSVLLAPPSAVIDAVSGGAGLCGTARRARQTDPNLRKGSLLGLPAVDAVLILDEDPETTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLLTLPLCARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRAEGAR------------VVTVVRFVTEGTIEEALEGRGARAGIGGLEGRPLGEAV 5553
P+P APVLGCAG W+GARV ADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQR YPLPRKRRFR G+G E+GD A A A + EGG T G + G XXXXXXXXXXXXXXXXX XXXXXXXXXXXX + A RD EASRG P +LPGEVAAMRR RLVKAAEP NQRGLTRFQLSQMLEEK KAFKDVR+RLRLVLE KPRILPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKLARHLLRGVANR LARRELCEGRP+ARDGRVADAG AICRH+SLL SP P A ++ G G +E G GE LTMPELSRIGFEVEQ T+AKA ++A+L+GDA KASPVK+EG+ G SNG AG+ FS+R+LSRAP+ SWG+AV LLPHQA+AL+WIR LAGRGLGGVLCD+ GTGKTV AAA+VA+VA+CR+ VE E KK L L E+ AA G KASP + G A RPRPG L+PPPQLVV+PSWAMARWHMELAQACPRLVIKVWEEWR QE XXXXXXXXXXXXXXXX KA +P T R SSADVVLCSLERL EV GG RCAMT+PQ +VY+AVARS E++AALSG T P PA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ SAG+ EAQKEEFWRGH KDLELSVPERLEKYSGKLA+LGRAV RL +AGKKVL+LGALPDA LVHQYL ETDVPHECWA +GE+FP+ A XXXXXXXXXXXXXXXXXXXXXXXXXX AA S P +AA L AHH LGSFPSR+ P+ P PPKPAHERLWSGVQ PLWRFR S RT VLLAPPSA+++AV+GG+GLC + R ++R+GSLLGL +DAVLI DE P T XXXXXXXXXX +SLLTLP CAR + GR +G VVTVVR+V GTIEE LEG G + GI L G AV
Sbjct: 504 PLPHAPVLGCAGLWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRPVGLG-----EDGDKAATGT------------------AFEAKAEAEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQWYEHYHAVRRVRDNEASRGEGGLP-ILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSSGGVG-------------------GETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASPVKIEGMVASDGPGSNGV----AGY-EEFSSRNLSRAPD-SWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEKKRLSERLVKGE-----AEESGAASGXXX---------XXXXXXXXXXXXXXXXXXXXKASPPR-QGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTARRSSADVVLCSLERLAEVD-GGXXXXXXXXXXXXXXXXXXXRCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPALASNGLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------GALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPLSAHHNPLGSFPSRSPFPQAPVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXXWSRAALAAAL--------------QSLLTLPRCARRSSAPRAIRSMPATGGGAAADEN--------------------------------GRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDK-GISSLGAGGEGIAV 1693
BLAST of mRNA_P-littoralis_Contig162.13.63 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE) HSP 1 Score: 691 bits (1784), Expect = 4.650e-216 Identity = 474/611 (77.58%), Postives = 505/611 (82.65%), Query Frame = 2
Query: 5822 RCALEGKTFLARRNPPPA---EDSEAVCLSGSKRKCAEASDVE----DEKHWSEVPPPLRMACLRFPVGVEDILMEEMVQMDPMDFDTGQGGFDTDETRVFARLAQSGHPVPLPLLSYAVDASLAATPGRSFTERVRDLHLLGIAPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRPPSNRIKKIKKASSPRESSRRDSERSGAGARTASSVEEWTKTEDRLLVAAVQHFGENWVLVAFSINKCPILRGRMRSGSQCKARHSNLVALGAT-QRFPRSAKPLSVRLRADYKGVAILSEQPAALTLAMRTRAPVVPVVTAAARQMFAARFAALVNAAQKKPIPPPIPGCDNPEAVIQPAHNSHAKAADDAGAAGALAPTQITDRQRAALLQXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGIQPQAPLAVSGGAQQLQGGVSXXXXXXXXXXXXXAPSXXXAPAGAVPAGVXXXXXXXXXXXXXSAAQTLAANLSSQVRELLSRAPKLAGAAGGSAGSTHQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALA 7630
RC+LEGKT+L + A E +EAV LSG+KRK + D KHWSE PPLR C PV VEDIL+EEMVQM+P DFDT +G FDTDETRVFARLA+ GHPVP PLLSYAVDA+LAATPGRSFTERVRDLHLLGI+P+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDR PSNR KK+KKA SPRESSRR+ E GAG R +SVEEWTK ED LLV+AVQ FGENWVLVAFSINKCPILRGRMRSGSQCKARH+NLVALGA QR R A+PLSVRL Y+G AIL +QPAALT+AMR+R P+VPV AAARQ FAARFAALV A +KKPIPPPIPGCDNPEA+IQPAHNSHAKAA++AGAAGALAPTQITDRQRAAL+QXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GHGIQPQAPL VS G Q LQ G S XXXXXXXXXXX X PAGV S AQ LAANLSSQVR LLSRAP + GAAGGS T+QVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALA
Sbjct: 377 RCSLEGKTYLKQGEAASASASEGTEAVSLSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRTCPWSPVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVALGAAGQRSQRGARPLSVRLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRAALIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXX-------APAGVALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGS---TNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALA 977
BLAST of mRNA_P-littoralis_Contig162.13.63 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE) HSP 1 Score: 541 bits (1394), Expect = 4.830e-161 Identity = 444/762 (58.27%), Postives = 487/762 (63.91%), Query Frame = 1
Query: 1792 PVPRAPVLGCAGAWIGARVRADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRTPRYPLPRKRRFRAGVGFPGEDEEGDDGALSPPASGVDGVGVGWAGAXXXASGASVKVEGGGTVAGSMGGRXXXXXXXXXXXXXXXXXAGVTVGXXXXXXXXXXXXEGSAMAGHV----------------------------FFANGGGRDAEASRGGRRAPTMLPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKNKAFKDVRSRLRLVLEHKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLARHLLRGVANRMALARRELCEGRPEARDGRVADAGKAICRHISLLTVSPPRSTTLGGGATPGLKREGGAPVPPAADAAASGAGAAGXXXXXXXXXXGSPSSEAASERQGKGELTMPELSRIGFEVEQSMTKAKAGLQAALSGDAAKASPVKMEGVDVGGGINSNGAAAGDAGFGHRFSARDLSRAPEGSWGLAVRLLPHQAQALAWIRDLAGRGLGGVLCDEPGTGKTVVAAASVALVASCRAAVEEEAVKKGL---ESSLSPAHNLCVSFPETKAAHGASFAAGGAASKVDTATPGISVADAKDGASLPSKASPGKGAGVRATRPRPGRLSPPPQLVVMPSWAMARWHMELAQACPRLVIKVWEEWRHQERHGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVPRT-RCSSADVVLCSLERLMEVSSGGDSADVRLARSVRWTQ 3981
P+P AP+LGCAG W+GARV ADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQR YPLPRKRRFR +G G+ +EG GA A V+ EGG T G + G XXXXXXXXXXXXXXXXX XXXXXXXXXXXX + A RD EASRGG P + PGEVAAMRRQRLVKAAEP NQRGLTRFQLSQMLEEK KAFKDVR+RLRLVLE KPRILPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKLARHLLRGVANR LARRE CEGRP+ARDGRVADAG AICRH+SLL SPP AS PS+ + ELTMPELSRIGFEVEQ T+AKA ++AAL+GDA KASPVKMEG+D G NGA AG+ + FS+R+LSRAP+ SWG+AV LLPHQ +AL+WIR LAGRGLGGVLCD+ GTGKTV AAA+VA+VA+CR+ VE E L E LS H + E+ AA GAS A G + + PG+GA A RPRPG L+PPPQLVV+PSWAMARWHMELAQACPRLVIKVWEEWR QE H XXXXXXXXXXXX KA +P T R SS DVVLCSLERL EV GG SAD RLARSVRW+Q
Sbjct: 65 PLPHAPILGCAGRWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRFRP-LGLGGDGDEGATGAAFE---------------------AKVEGEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWYQHYHAVRRVRDNEASRGGGGLP-IPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXXXXXXXXKGPLLAS-----------------CPSTSGGIGGGEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASPVKMEGLDALDGTGINGA----AGY-NEFSSRNLSRAPD-SWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQEEKRLSE-HLVKGEAEESGAASGASSAG--------XXXXXXXXXXXXXGRTSTKASRPGRGA--LAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQE-HXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPPTARRSSVDVVLCSLERLAEVD-GGVSADARLARSVRWSQ 767 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.13.63 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig162.13.63 >prot_P-littoralis_Contig162.13.63 ID=prot_P-littoralis_Contig162.13.63|Name=mRNA_P-littoralis_Contig162.13.63|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1880bp MSSRSSKRRSGAGAANASSKNAGGSGASEDAGDEDGGGRSLRKTPSRRTNback to top mRNA from alignment at P-littoralis_Contig162:71133..137963+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig162.13.63 ID=mRNA_P-littoralis_Contig162.13.63|Name=mRNA_P-littoralis_Contig162.13.63|organism=Pylaiella littoralis U1_48|type=mRNA|length=66831bp|location=Sequence derived from alignment at P-littoralis_Contig162:71133..137963+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig162:71133..137963+ >mRNA_P-littoralis_Contig162.13.63 ID=mRNA_P-littoralis_Contig162.13.63|Name=mRNA_P-littoralis_Contig162.13.63|organism=Pylaiella littoralis U1_48|type=CDS|length=5640bp|location=Sequence derived from alignment at P-littoralis_Contig162:71133..137963+ (Pylaiella littoralis U1_48)back to top |