mRNA_P-littoralis_Contig162.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.79.1
Unique NamemRNA_P-littoralis_Contig162.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:474501..476024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789780.1112738-CDS-P-littoralis_Contig162:474502..4746271680789780.1112738-CDS-P-littoralis_Contig162:474502..474627Pylaiella littoralis U1_48CDSP-littoralis_Contig162 474503..474627 -
1680789780.1296396-CDS-P-littoralis_Contig162:475894..4760241680789780.1296396-CDS-P-littoralis_Contig162:475894..476024Pylaiella littoralis U1_48CDSP-littoralis_Contig162 475895..476024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.79.1prot_P-littoralis_Contig162.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 474503..476024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.79.1

>prot_P-littoralis_Contig162.79.1 ID=prot_P-littoralis_Contig162.79.1|Name=mRNA_P-littoralis_Contig162.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
TCKGGEPAPSEPIAPAASDAARSSVGGQGLGASGDPGGEAIEDGASGMYD
DGNASDGADDSPADRTKNTKAPWVDLLHEFLSAYR
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mRNA from alignment at P-littoralis_Contig162:474501..476024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.79.1 ID=mRNA_P-littoralis_Contig162.79.1|Name=mRNA_P-littoralis_Contig162.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1524bp|location=Sequence derived from alignment at P-littoralis_Contig162:474501..476024- (Pylaiella littoralis U1_48)
ACTTGCAAAGGGGGAGAGCCAGCCCCTTCAGAGCCTATTGCACCTGCTGC
GAGCGATGCCGCTAGGTCAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAG
GTGATCCGGGTGGCGAGGCCATAGAAGACGGTGAGTTGACATGGACGAGG
GAGAGATGAGCAGAGCGTGGCCTTAGATTGGCACCCTCCCGGCGCTATCG
AAACAGCAGTGTCCAGAATGCGACGTATAATATCACCCCCCCTCCCCCCC
TGGGCTCTTTTTTTCCTCGAACGACGATTACGCCGCCACGAACAGGATAC
CAATATCAAAATATACGGTGCGTTTTCACGACATATCTCCAACGCCACGC
TTGTCGGCACCGAAAATCGGGCAAGGGGGATATACCTGGTACAAAAAAAG
TCTTATATTTTCACTCCGTAGGGGGGGGGTCTTATCCTACGCAACCTACT
GCTGTATATACACGTATACTTCGAAGTATATACCAGGGGTACTTATATAC
AGCCGCATATCGTTCTACCCCCCGCATAGGCAAGGGCAACACCAATAGTG
GCCAAACCGTTAGATGGCAGCTTTCTATTTTTGTCGCATGCATGTTTTTA
ATTTTTACAAGCAGTTGGTCGGGATTGCTGAGCAGAATTGTTGGGTTCCG
TGCGATTTGGGTACCGTAAAGTACCGTGAATTAGCAGGAATGGCTGCTAT
TTCACCCCGTTGTAGACGTTTTAGGGTGTCTCCATGCTCCCTGTGTCGCT
TCTGTCCCTGCTGCCCCGCACTTTAGGATAGGCAACACACCACAAAAAAA
TGCAAACAATCGCATGCAACCTCTCACCATACGGGGTGCCAGCAAACACC
TTCGCACAAGTGCCGGATGAGCGCAGCTTTTTCGCCAAACAGTCGGCTAT
ATTCGTTCGCAGTGATACTTAAACTCCAAGAACACAATCCCGTCGAAAAT
AACCCCGGGGTTAACACATCATAAACGATGTACCCCGAGGGGCTTCGCAC
TTGTATCTTGCGGGGGGGGTTGGTAGGCTGTTTTCACACAATGTTTCGTA
TTCTGATCCGATAATTATGCGCCCCGAATTGGTGGCCTCGCAAGAAAAAA
GCGTTTTCGTAGACCCAGGGTTAACTTTGTTGTCATTTCCTTAATTATCG
ACCCTCGTATGCAGACCCGGGGCGATATTTCTGCGCAACGGTTTCGTTCC
GTCCCCGTAGACCCCGACAAAGGGGTGACGAAGATCCACTTACATGTAGA
AACGACTTCATACTTCCTGTCCCGTGCTCACTCGAAAACGTACGATACTG
CATGTGCCTTGATCGTTTTTAACAACGGCAGTATTTAAATCGTATCACGT
CGCCTGTGCTCGCTGTTGCTGCCACTTGCCCCCTCAACTCGGCTCAGGCG
CGAGCGGCATGTACGACGATGGTAACGCTTCCGATGGCGCCGACGATTCG
CCTGCGGACCGAACGAAGAACACGAAGGCTCCTTGGGTTGACCTGTTGCA
CGAGTTCCTGAGCGCATACCGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:474501..476024-

>mRNA_P-littoralis_Contig162.79.1 ID=mRNA_P-littoralis_Contig162.79.1|Name=mRNA_P-littoralis_Contig162.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig162:474501..476024- (Pylaiella littoralis U1_48)
ACTTGCAAAGGGGGAGAGCCAGCCCCTTCAGAGCCTATTGCACCTGCTGC
GAGCGATGCCGCTAGGTCAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAG
GTGATCCGGGTGGCGAGGCCATAGAAGACGGCGCGAGCGGCATGTACGAC
GATGGTAACGCTTCCGATGGCGCCGACGATTCGCCTGCGGACCGAACGAA
GAACACGAAGGCTCCTTGGGTTGACCTGTTGCACGAGTTCCTGAGCGCAT
ACCGA
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