mRNA_P-littoralis_Contig1611.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1611.5.1
Unique Name	mRNA_P-littoralis_Contig1611.5.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A6L2P7F0_TANCI (Carotenoid cleavage dioxygenase 1 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P7F0_TANCI)

HSP 1 Score: 154 bits (389), Expect = 1.340e-42
Identity = 95/174 (54.60%), Postives = 109/174 (62.64%), Query Frame = 3

Query:   72 FTARTTGVSNPICYPSFRLL*S------AFAIGGPSNLYAFHRSTGNSLYPYYPQV**FLLHF*S*ASSFNNRLTKPPTNALRPVIPDNTCIPRLTAAAGTELADAYSSSNRFTTL--------WAFFPHAVLLCQAFAHCRKFPTAASRKSLDRVSVPV*LVVLSNQLLIVAL 551
            F++RTTGV NPI  PSFRL  S      AFA+G  S+LYAFHRSTGNSL PY+                           ALRP+IPDN CI  +TAAAGTELADAYS      +         WAF+ HA LL QAFAHC KFPTAASR+SL RVSVPV L++LS+QLLI+AL
Sbjct:    3 FSSRTTGVFNPIRSPSFRLSVSVSAQQSAFAVGVLSDLYAFHRSTGNSLCPYH---------------------------ALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVYDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIAL 149

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A1J7I993_LUPAN (Uncharacterized protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1J7I993_LUPAN)

HSP 1 Score: 145 bits (367), Expect = 9.090e-42
Identity = 85/126 (67.46%), Postives = 95/126 (75.40%), Query Frame = 1

Query:    1 PGGILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            PGGILNALAT LHGSI  T SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PISTHFTAP EIP TPT+L+  SF+    V+   LT +L +HLQTLYAQ FRITLAS +LPRLLA+S
Sbjct:    4 PGGILNALATALHGSIRTTPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSTPTLLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASSILPRLLAQS 129

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A151S2A8_CAJCA (Uncharacterized protein (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S2A8_CAJCA)

HSP 1 Score: 144 bits (363), Expect = 1.620e-40
Identity = 85/126 (67.46%), Postives = 94/126 (74.60%), Query Frame = 1

Query:    1 PGGILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            PGGILNALAT LHGSI A  SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PISTHFTAP EIP  PT+L+  SF+    V+   LT +L +HLQTLYAQ FRITLAS VLPRLLA+S
Sbjct:   53 PGGILNALATALHGSIRAAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASSVLPRLLAQS 178

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A6A5MJQ2_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MJQ2_LUPAL)

HSP 1 Score: 138 bits (348), Expect = 1.150e-38
Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 1

Query:    7 GILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            GILNALAT LHGSIH T SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PIS HFTAPLE PF PT+L+  SF+    V+   LT +L +HLQTLYAQ F ITLAS VLP+LLA+S
Sbjct:   23 GILNALATTLHGSIHTTPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISMHFTAPLENPFAPTLLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFWITLASSVLPQLLAQS 146

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A8J5F7R0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7R0_ZINOF)

HSP 1 Score: 138 bits (347), Expect = 1.280e-38
Identity = 83/149 (55.70%), Postives = 94/149 (63.09%), Query Frame = 3

Query:  135 SAFAIGGPSNLYAFHRSTGNSLYPYYPQV**FLLHF*S*ASSFNNRLTKPPTNALRPVIPDNTCIPRLTAAAGTELADAYSSSNRFTTL--------WAFFPHAVLLCQAFAHCRKFPTAASRKSLDRVSVPV*LVVLSNQLLIVALVG 557
            SAFA+   S+LYAFHRSTGNSL PY+                           ALRP+IPDN CI  LTAAAGTELADAYSS     +         WAF+ HA LL QAFAHC KFPTAASR+SL RVSVPV L++LS+QLLI+ALV 
Sbjct:   12 SAFAVDVLSDLYAFHRSTGNSLCPYH---------------------------ALRPIIPDNACILCLTAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVS 133

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A6A5MV91_LUPAL (Uncharacterized protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6A5MV91_LUPAL)

HSP 1 Score: 139 bits (350), Expect = 1.280e-38
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 1

Query:    7 GILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            GILNALAT LHGSI  T SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PISTHFTAP EIP  PT+L+  SF+    V+   LT +L +HLQTLYAQ FRITLAS VLPRLLA+S
Sbjct:   50 GILNALATALHGSIRTTPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTLLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASSVLPRLLAQS 173

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A6A5L520_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L520_LUPAL)

HSP 1 Score: 139 bits (350), Expect = 1.530e-38
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 1

Query:    7 GILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            GILNALAT LHGSI  T SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PISTHFTAP EIP  PT+L+  SF+    V+   LT +L +HLQTLYAQ FRITLAS VLPRLLA+S
Sbjct:   56 GILNALATALHGSIRTTPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTLLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASSVLPRLLAQS 179

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: M1DBW2_SOLTU (30S ribosomal protein S12, chloroplastic n=3 Tax=Pentapetalae TaxID=1437201 RepID=M1DBW2_SOLTU)

HSP 1 Score: 143 bits (361), Expect = 2.940e-38
Identity = 84/126 (66.67%), Postives = 93/126 (73.81%), Query Frame = 1

Query:    1 PGGILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            PGGILNALAT LHGSI    SIHRL+LGLLGYLIPFA LAFVS       +V SP V  PISTHFTAP EIP  PT+L+  SF+    V+   LT DL +HLQTLYAQ FRITLAS VLPRLLA++
Sbjct:   73 PGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQN 198

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A8J5GV12_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GV12_ZINOF)

HSP 1 Score: 142 bits (359), Expect = 4.490e-38
Identity = 84/149 (56.38%), Postives = 96/149 (64.43%), Query Frame = 3

Query:  135 SAFAIGGPSNLYAFHRSTGNSLYPYYPQV**FLLHF*S*ASSFNNRLTKPPTNALRPVIPDNTCIPRLTAAAGTELADAYSSSNRFTTL--------WAFFPHAVLLCQAFAHCRKFPTAASRKSLDRVSVPV*LVVLSNQLLIVALVG 557
            SAFA+G  S+LYAFHRSTGNSL+PY+                           ALRP+IPDN CI  LTAAAGTELADAYSS     +         WAF+ HA LL QAFAHC KFPTAASR+SL RVSVPV L++LS+QLLI+AL G
Sbjct:  162 SAFAVGVLSDLYAFHRSTGNSLFPYH---------------------------ALRPIIPDNACILCLTAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALPG 283

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BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Match: A0A5A7VJP9_CUCME (Uncharacterized protein n=2 Tax=fabids TaxID=91835 RepID=A0A5A7VJP9_CUCME)

HSP 1 Score: 140 bits (352), Expect = 8.960e-38
Identity = 83/126 (65.87%), Postives = 92/126 (73.02%), Query Frame = 1

Query:    1 PGGILNALATILHGSIHATSSIHRLQLGLLGYLIPFATLAFVSY------KVPSPSVVLPISTHFTAPLEIPFTPTILKSSSFYYTFEVKLQALTIDLLNHLQTLYAQ*FRITLASPVLPRLLARS 360
            PGGILNALAT LHGSI    SIHRL+LGLLGYLIPFA LAFVS       +V SP V   ISTHFTAP +IP  PT+L+  SF+    V+   LT DL +HLQTLYAQ FRITLAS VLPRLLA+S
Sbjct:  144 PGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS 269

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1611.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6L2P7F0_TANCI	1.340e-42	54.60	Carotenoid cleavage dioxygenase 1 n=1 Tax=Tanacetu...	[more]
A0A1J7I993_LUPAN	9.090e-42	67.46	Uncharacterized protein n=4 Tax=Mesangiospermae Ta...	[more]
A0A151S2A8_CAJCA	1.620e-40	67.46	Uncharacterized protein (Fragment) n=2 Tax=Cajanus...	[more]
A0A6A5MJQ2_LUPAL	1.150e-38	66.13	Uncharacterized protein n=1 Tax=Lupinus albus TaxI...	[more]
A0A8J5F7R0_ZINOF	1.280e-38	55.70	Uncharacterized protein n=1 Tax=Zingiber officinal...	[more]
A0A6A5MV91_LUPAL	1.280e-38	66.94	Uncharacterized protein n=3 Tax=Mesangiospermae Ta...	[more]
A0A6A5L520_LUPAL	1.530e-38	66.94	Uncharacterized protein n=1 Tax=Lupinus albus TaxI...	[more]
M1DBW2_SOLTU	2.940e-38	66.67	30S ribosomal protein S12, chloroplastic n=3 Tax=P...	[more]
A0A8J5GV12_ZINOF	4.490e-38	56.38	Uncharacterized protein n=1 Tax=Zingiber officinal...	[more]
A0A5A7VJP9_CUCME	8.960e-38	65.87	Uncharacterized protein n=2 Tax=fabids TaxID=91835...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1611	contig	P-littoralis_Contig1611:5510..6109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1122992.CBQQ010000044_gene466
Model size	557
Max annot lvl	976\|Bacteroidetes
Hectar predicted targeting category	no signal peptide or anchor
Exons	3
Evalue	9.17e-08
EggNOG OGs	29ZMA@1\|root,30MMU@2\|Bacteria,4PAD9@976\|Bacteroidetes,2FZG7@200643\|Bacteroidia
Cds size	174

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789779.8111043-UTR-P-littoralis_Contig1611:5509..5526	1680789779.8111043-UTR-P-littoralis_Contig1611:5509..5526	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1611 5510..5526 -
1680789779.8500564-UTR-P-littoralis_Contig1611:5725..5960	1680789779.8500564-UTR-P-littoralis_Contig1611:5725..5960	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1611 5726..5960 -
1680789779.866487-UTR-P-littoralis_Contig1611:5978..6109	1680789779.866487-UTR-P-littoralis_Contig1611:5978..6109	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1611 5979..6109 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789779.8247344-CDS-P-littoralis_Contig1611:5526..5680	1680789779.8247344-CDS-P-littoralis_Contig1611:5526..5680	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1611 5527..5680 -
1680789779.8369823-CDS-P-littoralis_Contig1611:5705..5725	1680789779.8369823-CDS-P-littoralis_Contig1611:5705..5725	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1611 5706..5725 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1611.5.1	prot_P-littoralis_Contig1611.5.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1611 5527..5725 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1611:5510..6109-
coding sequence from alignment at P-littoralis_Contig1611:5510..6109-

protein sequence of mRNA_P-littoralis_Contig1611.5.1

>prot_P-littoralis_Contig1611.5.1 ID=prot_P-littoralis_Contig1611.5.1|Name=mRNA_P-littoralis_Contig1611.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MLIRQVIGLQPCGLSSLTRYCSVRLSPIAENSPLLPPVRVWTVSQFQCDW
SSSQTSY*

mRNA from alignment at P-littoralis_Contig1611:5510..6109-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1611.5.1 ID=mRNA_P-littoralis_Contig1611.5.1|Name=mRNA_P-littoralis_Contig1611.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=600bp|location=Sequence derived from alignment at P-littoralis_Contig1611:5510..6109- (Pylaiella littoralis U1_48)
CCAGGCGGAATACTTAACGCGTTAGCTACGATACTGCATGGATCGATACA
CGCAACATCTAGTATTCATCGTTTACAGCTAGGACTACTGGGGTATCTAA
TCCCATTTGCTACCCTAGCTTTCGTCTCTTAGTGTCAGAAATAGCCCAGT
AAAGTGCCTTCGCCATCGGTGGTCCTTCCAATCTCTACGCATTTCACCGC
TCCACTGGAAATTCCCTTTACCCCTACTATCCTCAAGTCTAGTAGTTTCT
ATTACACTTTTGAAGTTAAGCTTCAAGCTTTAACAATAGACTTACTAAAC
CACCTACAAACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCCC
CGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCGTCAAG
TAATGTCAGAACTTCTTCCTTGACAAAAGAGGTTTACAACCCTGTGGGCT
TTCTTCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCCCATTGCAGAAA
ATTCCCCACTGCTGCCTCCCGTAAGAGTCTGGACCGTGTCTCAGTTCCAG
TGTGACTGGTCGTCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTAGGC

Coding sequence (CDS) from alignment at P-littoralis_Contig1611:5510..6109-

>mRNA_P-littoralis_Contig1611.5.1 ID=mRNA_P-littoralis_Contig1611.5.1|Name=mRNA_P-littoralis_Contig1611.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig1611:5510..6109- (Pylaiella littoralis U1_48)
ATGCTTATTCGTCAAGTAATAGGTTTACAACCCTGTGGGCTTTCTTCCCT
CACGCGGTATTGCTCTGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCAC
TGCTGCCTCCCGTAAGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGG
TCGTCCTCTCAAACCAGCTACTGA