mRNA_P-littoralis_Contig161.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.15.1
Unique NamemRNA_P-littoralis_Contig161.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:40620..41405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.5273569-CDS-P-littoralis_Contig161:40619..411831680789776.5273569-CDS-P-littoralis_Contig161:40619..41183Pylaiella littoralis U1_48CDSP-littoralis_Contig161 40620..41183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.5389063-UTR-P-littoralis_Contig161:41183..414051680789776.5389063-UTR-P-littoralis_Contig161:41183..41405Pylaiella littoralis U1_48UTRP-littoralis_Contig161 41184..41405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.15.1prot_P-littoralis_Contig161.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 40620..41183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.15.1

>prot_P-littoralis_Contig161.15.1 ID=prot_P-littoralis_Contig161.15.1|Name=mRNA_P-littoralis_Contig161.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
MSRTLHVSGNEQNRDTGWHRDPTPKTTLLSVQRTHNWCTPTGVLLVNIRE
CHWFYGYEYLSQYRNHASHRTPVLAFLHSVLLHTQESANTKRPVIRKLST
RSVLNHLFRQWYSPGCGAIRNAKKLTRGCDDSHDYGIHQFLCNKRRPGFL
APPIIFYRLPPVYHVVVCSKLTRICRMRWSDKFYVTL*
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mRNA from alignment at P-littoralis_Contig161:40620..41405+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.15.1 ID=mRNA_P-littoralis_Contig161.15.1|Name=mRNA_P-littoralis_Contig161.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig161:40620..41405+ (Pylaiella littoralis U1_48)
ATGAGCAGAACTCTTCATGTTTCGGGCAATGAACAAAATAGAGACACCGG
GTGGCATCGTGACCCAACGCCGAAAACCACGTTGTTGTCCGTTCAGCGCA
CACACAATTGGTGTACACCAACAGGAGTACTGTTAGTAAATATTCGTGAA
TGTCATTGGTTTTATGGCTACGAGTACTTGTCCCAGTACCGTAATCATGC
GAGTCATCGCACCCCCGTGTTAGCTTTTTTGCATTCCGTATTGCTCCATA
CCCAGGAGAGCGCGAACACCAAACGACCCGTCATACGAAAGCTCTCGACG
AGATCTGTCCTAAACCACCTTTTTCGGCAGTGGTACTCTCCTGGTTGTGG
AGCAATACGGAATGCAAAAAAGCTAACACGGGGGTGCGATGACTCGCATG
ATTACGGTATACACCAATTTTTGTGTAATAAAAGGAGACCAGGGTTTCTT
GCGCCTCCTATTATTTTTTATCGTCTTCCGCCTGTCTACCATGTCGTGGT
ATGCTCAAAATTAACACGCATTTGTCGTATGCGTTGGTCTGATAAGTTCT
ATGTGACCCTCTAGCTGATCCGCCAAACATACACCGACAAGTAGGTGTAG
ACCGGTATCCTGATCAGATGGGATGGCGACAAACACACGCACAAACATGT
GTAAAGCTCTCGAACAAAGCCTTAGTTGCCGTCTTTCTTGTTGCTCGGAA
GTTACCGTGAGAAACATCGTTATTTTTTCTGGTCGTTACCCAAGTGTGCT
TGTTGCTTTTCGTCAGGGTACCCGGGTGTGTGCGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig161:40620..41405+

>mRNA_P-littoralis_Contig161.15.1 ID=mRNA_P-littoralis_Contig161.15.1|Name=mRNA_P-littoralis_Contig161.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig161:40620..41405+ (Pylaiella littoralis U1_48)
ATGAGCAGAACTCTTCATGTTTCGGGCAATGAACAAAATAGAGACACCGG
GTGGCATCGTGACCCAACGCCGAAAACCACGTTGTTGTCCGTTCAGCGCA
CACACAATTGGTGTACACCAACAGGAGTACTGTTAGTAAATATTCGTGAA
TGTCATTGGTTTTATGGCTACGAGTACTTGTCCCAGTACCGTAATCATGC
GAGTCATCGCACCCCCGTGTTAGCTTTTTTGCATTCCGTATTGCTCCATA
CCCAGGAGAGCGCGAACACCAAACGACCCGTCATACGAAAGCTCTCGACG
AGATCTGTCCTAAACCACCTTTTTCGGCAGTGGTACTCTCCTGGTTGTGG
AGCAATACGGAATGCAAAAAAGCTAACACGGGGGTGCGATGACTCGCATG
ATTACGGTATACACCAATTTTTGTGTAATAAAAGGAGACCAGGGTTTCTT
GCGCCTCCTATTATTTTTTATCGTCTTCCGCCTGTCTACCATGTCGTGGT
ATGCTCAAAATTAACACGCATTTGTCGTATGCGTTGGTCTGATAAGTTCT
ATGTGACCCTCTAG
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