mRNA_P-littoralis_Contig1602.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1602.1.1
Unique NamemRNA_P-littoralis_Contig1602.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.150e-29
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:   34 APSDVTVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 115
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.890e-27
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ +GVAERALGLI+DAA +  IQA  ++P APN+PSLWAEAI
Sbjct:   94 APSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPSLWAEAI 175
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.320e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:  793 APSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 874
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.320e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:  628 APSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 709
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.330e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:  641 APSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 722
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.330e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:  784 APSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 865
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5JBD1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.420e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP  V +V +DNGGEF +GEF  VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  ++P APN+PSLWAEAI
Sbjct:  691 APSDVIVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAI 772
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.390e-26
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    4 PLAVKIVHTDNGGEFDGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAILAELEEKTNTHIRS 285
            P  V I  TD GGEF G+F EVCR   IKQE +PPH+P++NG AER LGLI DAA +  IQA  +FPDAPN P LW EAI     +   T  +S
Sbjct:  104 PCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKNNGTAERTLGLITDAALASRIQATQLFPDAPNHPGLWTEAISCACHQLNCTATKS 197
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.530e-26
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 APLAVKIVHTDNGGEF-DGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            AP AV +V +DNGGEF +GEF +VCR+ CIKQE +P HSP+ NGVAERALGLIKDAA +  IQA  +FP APN+PSLWA  +
Sbjct:  567 APSAVMVVRSDNGGEFFEGEFGKVCRKYCIKQELTPAHSPEYNGVAERALGLIKDAALATRIQAPTLFPGAPNYPSLWATQV 648
[Close]
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.330e-26
Identity = 54/80 (67.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    4 PLAVKIVHTDNGGEFDGEFEEVCRELCIKQEESPPHSPQSNGVAERALGLIKDAARSGLIQAMVIFPDAPNFPSLWAEAI 243
            P  V IV TD GGEF G+F EVCR   IKQE +PPH+P+ NGVAERALGLI DAA +  IQA  +FPDAPN P LWAEAI
Sbjct:   82 PCKVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAI 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA6_9PHAE1.150e-2967.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE2.890e-2764.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE1.320e-2667.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.320e-2667.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.330e-2667.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.330e-2667.07Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JBD1_9PHAE2.420e-2667.07Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2Y3_9PHAE3.390e-2655.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KX24_9PHAE4.530e-2665.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T3_9PHAE7.330e-2667.50Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1602contigP-littoralis_Contig1602:3286..3610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15703055
PFAMsRVT_2
Model size326
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.69e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ACW4@33154|Opisthokonta,3BVPH@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size324
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.0038867-CDS-P-littoralis_Contig1602:3285..36091680789776.0038867-CDS-P-littoralis_Contig1602:3285..3609Pylaiella littoralis U1_48CDSP-littoralis_Contig1602 3286..3609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1602.1.1prot_P-littoralis_Contig1602.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1602 3286..3609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1602.1.1

>prot_P-littoralis_Contig1602.1.1 ID=prot_P-littoralis_Contig1602.1.1|Name=mRNA_P-littoralis_Contig1602.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
APLAVKIVHTDNGGEFDGEFEEVCRELCIKQEESPPHSPQSNGVAERALG
LIKDAARSGLIQAMVIFPDAPNFPSLWAEAILAELEEKTNTHIRSFLEER
AAIRSLME
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mRNA from alignment at P-littoralis_Contig1602:3286..3610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1602.1.1 ID=mRNA_P-littoralis_Contig1602.1.1|Name=mRNA_P-littoralis_Contig1602.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=325bp|location=Sequence derived from alignment at P-littoralis_Contig1602:3286..3610+ (Pylaiella littoralis U1_48)
GCTCCACTCGCGGTCAAAATTGTGCACACCGACAACGGAGGGGAGTTTGA
TGGAGAATTCGAGGAAGTGTGCCGTGAGCTCTGTATCAAGCAAGAAGAAT
CGCCCCCCCACAGCCCGCAGTCTAACGGTGTAGCGGAGAGAGCTCTGGGA
TTGATCAAGGACGCAGCTCGTTCAGGCCTCATCCAAGCGATGGTTATTTT
CCCAGATGCTCCAAACTTTCCCTCTTTGTGGGCAGAAGCCATCCTAGCGG
AGCTGGAGGAGAAGACTAATACGCACATCCGTTCCTTCCTCGAGGAGCGA
GCGGCCATCCGTTCCCTCATGGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1602:3286..3610+

>mRNA_P-littoralis_Contig1602.1.1 ID=mRNA_P-littoralis_Contig1602.1.1|Name=mRNA_P-littoralis_Contig1602.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig1602:3286..3610+ (Pylaiella littoralis U1_48)
GCTCCACTCGCGGTCAAAATTGTGCACACCGACAACGGAGGGGAGTTTGA
TGGAGAATTCGAGGAAGTGTGCCGTGAGCTCTGTATCAAGCAAGAAGAAT
CGCCCCCCCACAGCCCGCAGTCTAACGGTGTAGCGGAGAGAGCTCTGGGA
TTGATCAAGGACGCAGCTCGTTCAGGCCTCATCCAAGCGATGGTTATTTT
CCCAGATGCTCCAAACTTTCCCTCTTTGTGGGCAGAAGCCATCCTAGCGG
AGCTGGAGGAGAAGACTAATACGCACATCCGTTCCTTCCTCGAGGAGCGA
GCGGCCATCCGTTCCCTCATGGAG
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