mRNA_P-littoralis_Contig16.168.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.168.1
Unique NamemRNA_P-littoralis_Contig16.168.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.670e-26
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDY + SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  267 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337
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BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.610e-25
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDY + SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  590 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660
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BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.640e-25
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDY + SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct: 1038 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.560e-25
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDY + SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  397 RRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG 132
            RRVCDY + SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  473 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A2I1GI64_9GLOM (Uncharacterized protein n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GI64_9GLOM)

HSP 1 Score: 57.8 bits (138), Expect = 4.720e-8
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RR+C Y    L+KR+P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  528 RRICSYNFADLMKRVPEVLVSVPITTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRLPENIENLM 598
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BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A2N1N172_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N172_9GLOM)

HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7
Identity = 25/71 (35.21%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RR+C Y    L+K++P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  433 RRICSYNFAELMKQVPEVLVSVPVTTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRIPENIEKLM 503
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: U9TZ17_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TZ17_RHIID)

HSP 1 Score: 53.1 bits (126), Expect = 7.010e-7
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRV 201
            R  CDY  K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:   97 RNNCDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 163
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A015KJQ5_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015KJQ5_RHIIW)

HSP 1 Score: 53.1 bits (126), Expect = 1.380e-6
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRV 201
            R  CDY  K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  162 RNNCDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 228
[Close]
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Match: A0A1Y2GP19_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GP19_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 3.300e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    1 RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHR 183
            R  CDY  K L + +PA L+S+++  IRK+AR S+ Y++AY  GL G +     KK+  HR
Sbjct:  145 RANCDYTFKGLQETIPAALASVTILSIRKYARRSFRYMDAYRKGLSGRVAELQAKKYKSHR 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE4.670e-2670.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE1.610e-2570.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE1.640e-2570.42Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE2.560e-2569.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE1.390e-1170.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I1GI64_9GLOM4.720e-836.62Uncharacterized protein n=11 Tax=Rhizophagus TaxID... [more]
A0A2N1N172_9GLOM1.640e-735.21Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
U9TZ17_RHIID7.010e-741.79Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A015KJQ5_RHIIW1.380e-641.79Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A1Y2GP19_9FUNG3.300e-642.62Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:628385..628597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UEZ3
Model size213
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-06
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789769.551445-CDS-P-littoralis_Contig16:628384..6285971680789769.551445-CDS-P-littoralis_Contig16:628384..628597Pylaiella littoralis U1_48CDSP-littoralis_Contig16 628385..628597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.168.1prot_P-littoralis_Contig16.168.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 628385..628597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.168.1

>prot_P-littoralis_Contig16.168.1 ID=prot_P-littoralis_Contig16.168.1|Name=mRNA_P-littoralis_Contig16.168.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
RRVCDYFIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQ
YRDLKKWTCHRSSTDRVDAVL
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mRNA from alignment at P-littoralis_Contig16:628385..628597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.168.1 ID=mRNA_P-littoralis_Contig16.168.1|Name=mRNA_P-littoralis_Contig16.168.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig16:628385..628597- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTTCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTT
CGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCGACGGTTACATGCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:628385..628597-

>mRNA_P-littoralis_Contig16.168.1 ID=mRNA_P-littoralis_Contig16.168.1|Name=mRNA_P-littoralis_Contig16.168.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig16:628385..628597- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTTCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTT
CGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCGACGGTTACATGCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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