mRNA_P-littoralis_Contig1020.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1020.4.1
Unique NamemRNA_P-littoralis_Contig1020.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1020.4.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.310e-5
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   76 GDAQRARDLAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGG 222
            GDA+   DL + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G
Sbjct:  271 GDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSG 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1020.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE5.310e-552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1020contigP-littoralis_Contig1020:18298..20325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2030
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.8073308-CDS-P-littoralis_Contig1020:18297..187561680789360.8073308-CDS-P-littoralis_Contig1020:18297..18756Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 18298..18756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.8204405-UTR-P-littoralis_Contig1020:18756..203251680789360.8204405-UTR-P-littoralis_Contig1020:18756..20325Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 18757..20325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1020.4.1prot_P-littoralis_Contig1020.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1020 18298..18756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1020.4.1

>prot_P-littoralis_Contig1020.4.1 ID=prot_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
TPIKKEGQGGETQEDEEDEDQDGAGGDAQRARDLAKFGDRPDDWINPFSL
AFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGAGVGSAAKARG
LGRHDLANLDGAGGGAGGQQSRAAVKKERYVANAEEKRAERVRPPLSLGP
RP*
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mRNA from alignment at P-littoralis_Contig1020:18298..20325+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1020.4.1 ID=mRNA_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2028bp|location=Sequence derived from alignment at P-littoralis_Contig1020:18298..20325+ (Pylaiella littoralis U1_48)
ACTCCCATCAAGAAGGAAGGGCAGGGGGGGGAGACGCAGGAGGACGAAGA
GGACGAAGATCAGGACGGGGCAGGTGGAGATGCTCAACGTGCACGTGACT
TGGCTAAGTTCGGCGATAGGCCCGACGACTGGATCAATCCCTTCAGCCTT
GCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGACGTGGACCT
CAAATGCAAGGTGTCTGGAGGCGGCAAGACGGGCGCGGCAGCAACTGCCG
CAGTCGAACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCGTGGG
CTGGGCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGG
CGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGTATGTAGCGAACG
CAGAGGAAAAGAGGGCGGAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCG
AGGCCTTGAAGGCCATGACTGCCCCCGCCCAATCTTCGGAGAGCTCGAAG
AGACTGGCCCTTAGCGTGGAAACGCTCACAAGGACTGCCGTGCTGAGGCA
GTGTCTCGCTGAAGAGGGGGCCGAGGAGAGAAGTTGGACGTTCCGAAAGG
TCGCCAAGGAATCCCATATGCCCAGCTCGAAAAAATGGGACAAGGAAATA
CAGAGCAGTGGGATCGAGCACAGGAAGAGCTGCAGATATTGAGCAACCCC
CCCGGCGCAACGACGCAGACAGCTACGTTTGAGTTGTACCCTACCACTAC
CCTTCAGGGCTCAGGTAGTGGTGCCGGAGCCGGTGCCGCAGTCGATGGCA
GTGGTGGCGGGGCAGGGGGGGTGCAGCAGGAGATGCTATTGTTGTTTGGG
GAGTCGATGGGGGTGGAGGAGCTGCAGGCGGTACGCTGGAATTTGCTGGC
GAATCGGCGATATGAAACAGCCGGGGTGGTGAGGTTTTGATTTTTTGGTT
TAGCTGGAGTGACAGGCAAAAGGGTGGAGGCGGGGGGGAGGTCTTATTGC
GACCGTCACGTGTACGGTAAACTGATATTATCTGGTCGTGTTCGTGTTGT
GTCGAACCAACATCTGGTTGTTTTTTTCGTGTGTGACTGCTGTCGTGTGA
AACAACACCAGTTGTgaGAAGAGGGTACTGATGCGCCGGGTCGCACCATT
TTTTAATATTTTATTCATGTTTAATGCTGCTAAACTGATAACACCAGTCG
TGATCCATCTATGCCGGTGTTGGTATGCCAGAAGGGGTCAGCGACACGCA
GAGTCGAGCCGAGATTGTTTTTTTAGTGTTTGACTGTATCTGCGTGAAAA
ACAAAAGTTGTGTGTTCGTGTTTACTGCTGCCGCTGTGGAGAATAGCACT
GGCGGTGGTGGTACTTGACGCCACGTTCTTTTCGTGAGGAGAGGGATTTG
ATGCGCAGGGTCGAACCCGAAGTCTTTAGTGAGAGAGGAGTAGCGGGACG
TTCGGGTCGAGGTGAGATTCGATAGtTTTTTTATTTTCGTGTTCATAGTC
GTGTGAAACAATGCTGTTGGTGTAAGACTTTTGCGCATGTGTTTTTTTGC
GCAGCGCGAGAGGTATTCTGCCAGGTTCCCACTACAAGGTTGTGTGTTTG
TTACGTTTGCGAAGATGAATCACAGTCGAAGCTAACACTGTTTCCGAAGT
GTCTGCGTGTCTCTACTTCGGCAAGCTTCCCAACGGACTTGCGTACGACG
AGTATGCACACAGATACAACACGACGAAACGTTTCATCAGAGTCCTCTTT
CGAACTGGATTTAGTAACGTTTGCGAAAGTGAAAAATGTTTCGGCTATGA
TGCCACCGCAAAAACCAGGGATTTGGACACAATTCAAATACATCTCGGTA
CGCAGATAAGAATCAGAGCAGTACATGTGTCGTGCGAAACTAAAAAGTTG
CCATAGGCACAAGGGTATACGAAGTACAGCAGTATAGAATACTGTCATAT
GAACCAGCATGCCCTCCTCTGTGCGTTTTGCGGCTAGTGCACTGCCTGCC
GCGAGTGACCTTGAAACAAGAGGTAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1020:18298..20325+

>mRNA_P-littoralis_Contig1020.4.1 ID=mRNA_P-littoralis_Contig1020.4.1|Name=mRNA_P-littoralis_Contig1020.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig1020:18298..20325+ (Pylaiella littoralis U1_48)
ACTCCCATCAAGAAGGAAGGGCAGGGGGGGGAGACGCAGGAGGACGAAGA
GGACGAAGATCAGGACGGGGCAGGTGGAGATGCTCAACGTGCACGTGACT
TGGCTAAGTTCGGCGATAGGCCCGACGACTGGATCAATCCCTTCAGCCTT
GCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGACGTGGACCT
CAAATGCAAGGTGTCTGGAGGCGGCAAGACGGGCGCGGCAGCAACTGCCG
CAGTCGAACCGGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCGTGGG
CTGGGCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGG
CGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGTATGTAGCGAACG
CAGAGGAAAAGAGGGCGGAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCG
AGGCCTTGA
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