mRNA_P-littoralis_Contig1020.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1020.24.1
Unique NamemRNA_P-littoralis_Contig1020.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1020.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1020contigP-littoralis_Contig1020:65057..65450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.7512803-UTR-P-littoralis_Contig1020:65056..650871680789360.7512803-UTR-P-littoralis_Contig1020:65056..65087Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 65057..65087 -
1680789360.7711341-UTR-P-littoralis_Contig1020:65387..654501680789360.7711341-UTR-P-littoralis_Contig1020:65387..65450Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 65388..65450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.762413-CDS-P-littoralis_Contig1020:65087..653871680789360.762413-CDS-P-littoralis_Contig1020:65087..65387Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 65088..65387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1020.24.1prot_P-littoralis_Contig1020.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1020 65088..65387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1020.24.1

>prot_P-littoralis_Contig1020.24.1 ID=prot_P-littoralis_Contig1020.24.1|Name=mRNA_P-littoralis_Contig1020.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MDLMERGCLSCAVVPKPATGDERSPVELALLESPSAVVQRSATPVMVESV
SVERDVQQSSPRAQAKEQPNPVRVTPSEGEQLDPVVVSPSETGGVFRGG*
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mRNA from alignment at P-littoralis_Contig1020:65057..65450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1020.24.1 ID=mRNA_P-littoralis_Contig1020.24.1|Name=mRNA_P-littoralis_Contig1020.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig1020:65057..65450- (Pylaiella littoralis U1_48)
GATGATTTGCCTTTCGATCGCGGCGACGGTGGTGGATGTGCAAGTACCAC
AGCAGCGGATAAAATGGACCTGATGGAGAGAGGGTGTCTTTCGTGTGCAG
TGGTACCCAAACCCGCGACCGGGGACGAACGAAGCCCGGTTGAGCTAGCA
TTGTTGGAGTCGCCTTCCGCGGTAGTGCAACGCTCAGCAACGCCCGTTAT
GGTAGAATCCGTGTCGGTGGAACGGGATGTCCAGCAGTCATCACCGCGGG
CGCAAGCGAAGGAGCAGCCAAATCCGGTAAGGGTGACGCCTTCGGAGGGC
GAGCAGCTGGATCCGGTGGTGGTGTCGCCGTCGGAGACCGGGGGCGTGTT
CAGGGGTGGCTGACTTCTCGTTCGACCTCGAACGCCTCACTTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1020:65057..65450-

>mRNA_P-littoralis_Contig1020.24.1 ID=mRNA_P-littoralis_Contig1020.24.1|Name=mRNA_P-littoralis_Contig1020.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1020:65057..65450- (Pylaiella littoralis U1_48)
ATGGACCTGATGGAGAGAGGGTGTCTTTCGTGTGCAGTGGTACCCAAACC
CGCGACCGGGGACGAACGAAGCCCGGTTGAGCTAGCATTGTTGGAGTCGC
CTTCCGCGGTAGTGCAACGCTCAGCAACGCCCGTTATGGTAGAATCCGTG
TCGGTGGAACGGGATGTCCAGCAGTCATCACCGCGGGCGCAAGCGAAGGA
GCAGCCAAATCCGGTAAGGGTGACGCCTTCGGAGGGCGAGCAGCTGGATC
CGGTGGTGGTGTCGCCGTCGGAGACCGGGGGCGTGTTCAGGGGTGGCTGA
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